TCONS_00021632 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021632
Unique NameTCONS_00021632
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1421

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021632 ID=TCONS_00021632|Name=TCONS_00021632|organism=Clytia hemisphaerica|type=transcript|length=1421bp
CAAGAACTTTATCGTATAAGAACGAAACTTATCAGGCCAATTAAAGATAA
ACCAGTGTTCAAAAGTTCTAGTGTAAATAAAATAGCCCttctgaaaaata
taattacctttttaaaattcaaaagttaatcTCCAAAGTTACTgtctgaa
gaagaagaagaagaagaactcaATTTCTTCAATGGTGGAGATTTTTCTGT
TTTAGCTTTTTCATCTAGGCAAGTTCTTAATTCATTAAATTGTTTTTCCA
GCGGTTCAAGTGCGTTCTTCCAGTATGGTAGATGAGCAAAATATGTATCA
CAGATTGACCGTAAAGCACTGTCTGACGGTGGTCCTGGCTTATCAGTAAA
ATCAGGTTCCACACTGTCACCAAGAAGAGTTAAAACACAACTAGCCATTG
CTCTTGAGATTGTACTTAAATTATAACCGCCTTCAAGAGCAAGTGCTACC
TTACCATTAGCAAACTTCATTAATCTTTTGGTCATTTCTGCATATCCGTA
TGGAGTGACTTTACAACCACCAAGCGGATCTCCAACACCAGCATCAAAAC
CAGCTGATATCAAAATCAGTTCTGGTTCATAATCTTCAAGTACAGGTATT
AAGAGGTTGTTAAAAGCATACAAATAAGCAGTGGACTTGATTTTACCTTT
GTTCCAAGCAACATGCATATTGTAACCAGTTCCAGGACCAATTCCAACAG
AATCATAGTTAGtttcctccaaatttggccaaaaactaTTATGATCATAA
CGATGtaaggaaaaatataaaactcttgGATCATCATCAAACATTTTGTG
TGTGGCATTACCATAGTGTACATCCCAGTCTAAAATCAAAACTCTTGTCA
ATTGATACTTTTCAATAGCCATCACTGCAGCTAGTGCAACATTATTCAAA
TGACAAAACCCCATTGATTGCTCTCTAGTAGCATGATGACCAGGTGGTCT
AATGATTGCAGCTCCATTTCGTAAATtccctttcaaaatttgatcaaCTA
ATTCTAAAGCACAGCCAGCGGATAGCAAAACACTTTGTGTAAGATTTTGG
TGAAGATAAATTGAATTTAAATCAATAGCCATCATCTCAAGATCGTGTCT
CTCCTTTTCAGACAGTGACATTATAAAATTGTAATGTTCCTCTGTGTGTT
TGACaacaatttcttcttttgatgcAAATCTGGATTTTAGTTCAACACAC
CTAGAAACAAGATTTTGATCCAACAATCTTTGGTAAATTCGACTTATCCT
CTCTGGACATTCTGGATGAGGTTTTTCTTCTGTATACATATGGAAAGGTA
GTTCACAATGATAAGAGCTCATCCGTTCATCATAAATAAGACCTGTGTTG
ATACCAGgagttttcttttccttttcagCCATCCTGTATTGATTATTTGT
CTTTTTCTAATGagtgtattt
Run BLAST on NCBI

transcript from alignment at sc0000391:22315..25947+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021632 ID=TCONS_00021632|Name=TCONS_00021632|organism=Clytia hemisphaerica|type=transcript|length=3633bp|location=Sequence derived from alignment at sc0000391:22315..25947+ (Clytia hemisphaerica)
CAAGAACTTTATCGTATAAGAACGAAACTTATCAGGCCAATTAAAGATAA
ACCAGTGTTCAAAAGTTCTAGTGTAAATAAAATAGCCCttctgaaaaata
taattacctttttaaaattcaaaagttaatcTCCAAAGTTACTgtctgaa
gaagaagaagaagaagaactcaATTTCTTCAATGGTGGAGATTTTTCTGT
TTTAGCTTTTTCATCTAGGCAAGTTCTTAATTCATTAAATTGTTTTTCCA
GCGGTTCAAGTGCGTTCTTCCAGTATGGTAGATGAGCAAAATATGTATCA
CAGATTGACCGTAAAGCACTGTCTGACGGTGGTCCTGGCTTATCAGTAAA
ATCAGGTTCCACACTGTCACCAAGAAGAGTTAAAACACAACTAGCCATTG
CTCTTGAGATTGTACTTAAATTATAACCGCCTTCAAGAGCAAGTGCTACC
TTACCATTAGCAAACTTCATTAATCTTTTGGTCATTTCTGCATATCCGTA
TGGAGTGACTTTACAACCACCAAGCGGATCTCCAACACCAGCATCAAAAC
CAGCTGATATCAAAATCAGTTCTGGTTCATAATCTTCAAGTACAGGTATT
AAGAGGTTGTTAAAAGCATACAAATAAGCAGTGGACTTGATTTTACCTTT
GTTCCAAGCAACATGCATATTGTAACCAGTTCCAGGACCAATTCCAACAG
AATCATAGTTAGtttcctccaaatttggccaaaaactaTTATGATCATAA
CGATGtaaggaaaaatataaaactcttgGATCATCATCAAACATTTTGTG
TGTGGCATTACCATAGTGTACATCCCAGTCTAAAATCAAAACTCTTGTCA
ATTGATACTTTTCAATAGCCATCACTGCAGCTAGTGCAACATTATTCAAA
TGACAAAACCCCATTGATTGCTCTCTAGTAGCATGATGACCAGGTGGTCT
CACAATTGCAGCTCCATTCTGTAAAttacctttcaaaatttgatcaaCTA
ATTCTAATGTACAACCAGCCGATAACAAAGCACTTTCAGTCAAANTTCTT
GTCAGTTGATACTTTTGAATAGCCATCACTGCAGCTAGTGCAACATTATT
CAAATGACAAAACCCCATTGATTGCTCTCTAGTTGCATGATGCCCAGGTG
GTCTAACGACCGCAGCTCCATTCTGTAAAttacctttcaaaatttgatca
aCTAATTCTAATGTACAACCAGCAGATAATAAAGCACTTTCAGTCAAATC
TTTGTGAAGATAAATTGAGTTTAAGTCACAAGCTAGTCGGTCCAATTCTT
CTTTATCCTTATCAACCAAAGACATAATAAAATCATAATGATCCTCGGTG
TGTTTAGTAATAATCTCCTCTTTATGTGCTGGCCTTGATTTCAAAACAGT
ACAACGTTCTGTTAACCCTTCATCGATAAGTTTCTGGTAAATCCTACTAA
TTCTTTCGGGACATTCTGGGTGTTGAAACTCACATGAATATAACGTCATT
TTTTCATCGTATATCAATCCAGTCTTGGAAGATGGCTTTTCATCTGGCTG
GGAAACAACTGGTAGTTCTTTAGTacgtttttcatctttttttccaATAT
GCTTTTCTACATTGTCGTCGGTGATTGAAATGCCATCAAAGgcatttgaa
agatcttcaacaGACATGAAGAAGAACACAGagtatttttttatgatttg
tcACTCTAATGAAATAAAGATAAGGTAATTGCATAGAAATGGTAGAGAGA
GATAAGGGTAACAGTTTTGAAGAATTGaaggaaaatttaaacatttgaaa
aagcagTTTAGTCAATCATTTTCActcaacttgattttttttagagaata
caaaagcaaatttttttttctaaatgctTTTAATAAATGTAactaaactt
atttcttttaaacactaaatatcaaaaagtataaaactaaattctaaaaa
atttatcTGAATATGTACACTAGAAAAAATGAGGAATTAAAGTAATGTAT
AGTTAtagatatcaaaatcaaaactacaaaaatttACAACTACAAATTAT
TATGCAGCTAAGCCTGCTCAAAGATTCAAGCCTAATAAATTAGACGGAAC
AAAGAATTCAAACTCTCCAAGCAAATTCACTAACATGCAATACTGCccca
aaaatatgttttttttcagtggggctaATTACTGCTTGGATCTTACTGAA
CTGGTGTGCATGAAGCATTCACATCCCTCTGTATTGATCGTTGACAACAA
AGTTGAAGAAGATAATCCAGAtaatcaaatgaaaacaaatatgTATTTTA
GAAATCAAATTTTTACAGCAAATATTTAACACAATAAAATTATAATCCCC
CCTCATTGAATTTCCCCATTTTCCTCTTCTTCTTCTGAGTCAATACCTTC
TTCAATGGGTTCTTGCTCATCCAACAAAGACCTCAATTCATTATACTGTT
CTTCTAATGGTTCCAATGTATTCTGCCAATATGGTAAAAGAGCAAAGAAG
GTATTACTAATGGACTTCAATGCACTATCAGAAGGTTGCGTATCACTAAC
ATCTAATTCTGGATCTGGTTTTACTTCGTCACCAAGAAGGGTAGACACAC
AGCTTGCCATTGATGTTGAAATGGTATCAAGATTATAACCACCTTCTAGA
ATAACTGCAACTTTACCACCAGCAAAGTCCATTAATTTTTTAGTCATTTG
AGCATATCCATAGGGAGTAACTTTACATTTTCCTAACGGATCATTAATTC
CAGCATCAAATCCTGCAGATACAAGAACTAACTCTGGATCAAAtctttta
agaattggtatcAAAAGGTTATCAAAGGCATATAAATAAGCACTAGActt
aattttacttttattcCAGGCTACATGAACATTATAGCCTTTACCAGACC
CTGTTCCAACATGATCATAATTAGCTTCAGTCTGGTGTGGCCAATATTTT
GTATAGTTGTATCTGTGCAAAGAAAAGTACAAAACTCTTGGATCATCATC
AAACATTTTGTGTGTGGCATTACCATAGTGTACATCCCAgtctaaaatca
aaattcttGTCAGTTGATACTTTTCAATAGCCATCACTGCAGCTAGTGCC
ACATTATTTAAATGACAAAATCCCATTGATTTCTCTCTAGTTGCATGATG
ACCAGGTGGTCTAATGATTGCAGCTCCATTTCGTAAATtccctttcaaaa
tttgatcaaCTAATTCTAAAGCACAGCCAGCGGATAGCAAAACACTTTGT
GTAAGATTTTGGTGAAGATAAATTGAATTTAAATCAATAGCCATCATCTC
AAGATCGTGTCTCTCCTTTTCAGACAGTGACATTATAAAATTGTAATGTT
CCTCTGTGTGTTTGACaacaatttcttcttttgatgcAAATCTGGATTTT
AGTTCAACACACCTAGAAACAAGATTTTGATCCAACAATCTTTGGTAAAT
TCGACTTATCCTCTCTGGACATTCTGGATGAGGTTTTTCTTCTGTATACA
TATGGAAAGGTAGTTCACAATGATAAGAGCTCATCCGTTCATCATAAATA
AGACCTGTGTTGATACCAGgagttttcttttccttttcagCCATCCTGTA
TTGATTATTTGTCTTTTTCTAATGagtgtattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012128XLOC_012128Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021632-exon-sc0000391-1491911889:22315..23257TCONS_00021632-exon-sc0000391-1491911889:22315..23257Clytia hemisphaericaexon
TCONS_00021632-exon-sc0000391-1510915933:22315..23257TCONS_00021632-exon-sc0000391-1510915933:22315..23257Clytia hemisphaericaexon
TCONS_00021632-exon-sc0000391-1575043694:22315..23257TCONS_00021632-exon-sc0000391-1575043694:22315..23257Clytia hemisphaericaexon
TCONS_00021632-exon-sc0000391-1491911889:25470..25947TCONS_00021632-exon-sc0000391-1491911889:25470..25947Clytia hemisphaericaexon
TCONS_00021632-exon-sc0000391-1510915933:25470..25947TCONS_00021632-exon-sc0000391-1510915933:25470..25947Clytia hemisphaericaexon
TCONS_00021632-exon-sc0000391-1575043694:25470..25947TCONS_00021632-exon-sc0000391-1575043694:25470..25947Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000391supercontigsc0000391:22315..25947 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.56333	3.00987	2.30322	0.968621	2.99932	2.1254	2.73972	2.07447	1.6127	2.21144	1.05566	0.539277	1.21866	0.838326	1.22556	1.7915	2.23397	2.11926	0.88294	0.901192	0.971457	0.728264	4.34711	4.48533	1.34764	1.44984	1.20016	0.44366	3.15262	3.23383
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000286His_deacetylse
IPR023801His_deacetylse_dom
Blast
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BLAST of TCONS_00021632 vs. Swiss-Prot (Human)
Match: HDAC6 (Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2)

HSP 1 Score: 312.383 bits (799), Expect = 2.344e-94
Identity = 148/361 (41.00%), Postives = 226/361 (62.60%), Query Frame = -1 
Query:  267 NTGLIYDERMSSYHCELPFHMYTEEKPHPECPERISRIYQRLLDQNLVSRCVELKSRFASKEEIVVKHTEEHYNFIMSLSEKERHDLEMMAIDLNSIYLHQNLTQSVLLSAGCALELVDQILKGNLRNGAAIIRPPGHHATREQSMGFCHLNNVALAAVMAIEKYQLTRVLILDWDVHYGNATHKMFDDDPRVLYFSLHRYDHNSFWPNLEETNYDSVGIGPGTGYNMHVAWNKGKIKSTAYLYAFNNLLIPVLEDYEPELILISAGFDAGVGDPLGGCKVTPYGYAEMTKRLMKFANGKVALALEGGYNLSTISRAMASCVLTLLGDSVEPDFTDKPGPPSDSALRSICDTYFAHLPYWK 1349
             TGL+ DE+++ +HC         +   PE PER+  I ++L+ + L+ RCV  ++RFA KEE+++ H+ E+ + + +       +L ++A   +S+YLH N      L++G  L LVD +L   +RNG AIIRPPGHHA      G+C  N+VA+AA  A +K+++ RVLI+DWDVH+G  T   FD DP VLYFS+HRY+   FWP+L+ +N+ + G G G GY ++V WN+  ++   Y+ AF ++L+PV  +++P+L+L++AGFDA  GDP G    TP G+A++T  LM  A GK+ L+LEGGYNL  ++  +++ + TLLGD       + PG P  SA  S+     A  P+W+
Sbjct:   85 GTGLVLDEQLNEFHC-------LWDDSFPEGPERLHAIKEQLIQEGLLDRCVSFQARFAEKEELMLVHSLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNSYSCACLASGSVLRLVDAVLGAEIRNGMAIIRPPGHHAQHSLMDGYCMFNHVAVAARYAQQKHRIRRVLIVDWDVHHGQGTQFTFDQDPSVLYFSIHRYEQGRFWPHLKASNWSTTGFGQGQGYTINVPWNQVGMRDADYIAAFLHVLLPVALEFQPQLVLVAAGFDALQGDPKGEMAATPAGFAQLTHLLMGLAGGKLILSLEGGYNLRALAEGVSASLHTLLGDPCP--MLESPGAPCRSAQASVSCALEALEPFWE 436

HSP 2 Score: 298.516 bits (763), Expect = 1.768e-89
Identity = 156/363 (42.98%), Postives = 228/363 (62.81%), Query Frame = -1 
Query:  264 TGLIYDERMSSYHCELPFHMYTEEKPHPECPERISRIYQRLLDQNLVSRCVELKSRFASKEEIVVKHTEEHYNFIMSLSEKERHDLEMMAIDLNSIYLHQNLTQSVLLSAGCALELVDQILKGNLRNGAAIIRPPGHHATREQSMGFCHLNNVALAA--VMAIEKYQLTRVLILDWDVHYGNATHKMFDDDPRVLYFSLHRYDHNSFWPNLEETNYDSVGIGPGTGYNMHVAWNKGKIKSTAYLYAFNNLLIPVLEDYEPELILISAGFDAGVGDPLGGCKVTPYGYAEMTKRLMKFANGKVALALEGGYNLSTISRAMASCVLTLLGDSVEPDFTDKPGPPSDSALRSICDTYFAHLPYWKN 1346
            TGL+YD+ M + HC L       +  HPE P+RI RI  RL +  L  RC+ L  R A++ E++  H+ E+   + +  + +  +L   + + +SIY+  +      L+ G A  LV+ +L G + NGAA++RPPGHHA ++ + GFC  N+VA+AA     I  + L R+LI+DWDVH+GN T  MF+DDP VLY SLHRYDH +F+P  +E     +G   GTG+ ++VAWN  ++    YL A++ L++P+  ++ PEL+L+SAGFDA  GDPLGGC+V+P GYA +T  LM  A+G++ L LEGGYNL++IS +MA+C  +LLGD        +  PP   AL SI +T   H  YW++
Sbjct:  481 TGLVYDQNMMN-HCNL------WDSHHPEVPQRILRIMCRLEELGLAGRCLTLTPRPATEAELLTCHSAEYVGHLRATEKMKTRELHRESSNFDSIYICPSTFACAQLATGAACRLVEAVLSGEVLNGAAVVRPPGHHAEQDAACGFCFFNSVAVAARHAQTISGHAL-RILIVDWDVHHGNGTQHMFEDDPSVLYVSLHRYDHGTFFPMGDEGASSQIGRAAGTGFTVNVAWNGPRMGDADYLAAWHRLVLPIAYEFNPELVLVSAGFDAARGDPLGGCQVSPEGYAHLTHLLMGLASGRIILILEGGYNLTSISESMAACTRSLLGDPPPLLTLPR--PPLSGALASITETIQVHRRYWRS 833
The following BLAST results are available for this feature:
BLAST of TCONS_00021632 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HDAC62.344e-9441.00Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=... [more]
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