|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021632 ID=TCONS_00021632|Name=TCONS_00021632|organism=Clytia hemisphaerica|type=transcript|length=1421bp
CAAGAACTTTATCGTATAAGAACGAAACTTATCAGGCCAATTAAAGATAA
ACCAGTGTTCAAAAGTTCTAGTGTAAATAAAATAGCCCttctgaaaaata
taattacctttttaaaattcaaaagttaatcTCCAAAGTTACTgtctgaa
gaagaagaagaagaagaactcaATTTCTTCAATGGTGGAGATTTTTCTGT
TTTAGCTTTTTCATCTAGGCAAGTTCTTAATTCATTAAATTGTTTTTCCA
GCGGTTCAAGTGCGTTCTTCCAGTATGGTAGATGAGCAAAATATGTATCA
CAGATTGACCGTAAAGCACTGTCTGACGGTGGTCCTGGCTTATCAGTAAA
ATCAGGTTCCACACTGTCACCAAGAAGAGTTAAAACACAACTAGCCATTG
CTCTTGAGATTGTACTTAAATTATAACCGCCTTCAAGAGCAAGTGCTACC
TTACCATTAGCAAACTTCATTAATCTTTTGGTCATTTCTGCATATCCGTA
TGGAGTGACTTTACAACCACCAAGCGGATCTCCAACACCAGCATCAAAAC
CAGCTGATATCAAAATCAGTTCTGGTTCATAATCTTCAAGTACAGGTATT
AAGAGGTTGTTAAAAGCATACAAATAAGCAGTGGACTTGATTTTACCTTT
GTTCCAAGCAACATGCATATTGTAACCAGTTCCAGGACCAATTCCAACAG
AATCATAGTTAGtttcctccaaatttggccaaaaactaTTATGATCATAA
CGATGtaaggaaaaatataaaactcttgGATCATCATCAAACATTTTGTG
TGTGGCATTACCATAGTGTACATCCCAGTCTAAAATCAAAACTCTTGTCA
ATTGATACTTTTCAATAGCCATCACTGCAGCTAGTGCAACATTATTCAAA
TGACAAAACCCCATTGATTGCTCTCTAGTAGCATGATGACCAGGTGGTCT
AATGATTGCAGCTCCATTTCGTAAATtccctttcaaaatttgatcaaCTA
ATTCTAAAGCACAGCCAGCGGATAGCAAAACACTTTGTGTAAGATTTTGG
TGAAGATAAATTGAATTTAAATCAATAGCCATCATCTCAAGATCGTGTCT
CTCCTTTTCAGACAGTGACATTATAAAATTGTAATGTTCCTCTGTGTGTT
TGACaacaatttcttcttttgatgcAAATCTGGATTTTAGTTCAACACAC
CTAGAAACAAGATTTTGATCCAACAATCTTTGGTAAATTCGACTTATCCT
CTCTGGACATTCTGGATGAGGTTTTTCTTCTGTATACATATGGAAAGGTA
GTTCACAATGATAAGAGCTCATCCGTTCATCATAAATAAGACCTGTGTTG
ATACCAGgagttttcttttccttttcagCCATCCTGTATTGATTATTTGT
CTTTTTCTAATGagtgtattt Run BLAST on NCBI transcript from alignment at sc0000391:22315..25947+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021632 ID=TCONS_00021632|Name=TCONS_00021632|organism=Clytia hemisphaerica|type=transcript|length=3633bp|location=Sequence derived from alignment at sc0000391:22315..25947+ (Clytia hemisphaerica)
CAAGAACTTTATCGTATAAGAACGAAACTTATCAGGCCAATTAAAGATAA
ACCAGTGTTCAAAAGTTCTAGTGTAAATAAAATAGCCCttctgaaaaata
taattacctttttaaaattcaaaagttaatcTCCAAAGTTACTgtctgaa
gaagaagaagaagaagaactcaATTTCTTCAATGGTGGAGATTTTTCTGT
TTTAGCTTTTTCATCTAGGCAAGTTCTTAATTCATTAAATTGTTTTTCCA
GCGGTTCAAGTGCGTTCTTCCAGTATGGTAGATGAGCAAAATATGTATCA
CAGATTGACCGTAAAGCACTGTCTGACGGTGGTCCTGGCTTATCAGTAAA
ATCAGGTTCCACACTGTCACCAAGAAGAGTTAAAACACAACTAGCCATTG
CTCTTGAGATTGTACTTAAATTATAACCGCCTTCAAGAGCAAGTGCTACC
TTACCATTAGCAAACTTCATTAATCTTTTGGTCATTTCTGCATATCCGTA
TGGAGTGACTTTACAACCACCAAGCGGATCTCCAACACCAGCATCAAAAC
CAGCTGATATCAAAATCAGTTCTGGTTCATAATCTTCAAGTACAGGTATT
AAGAGGTTGTTAAAAGCATACAAATAAGCAGTGGACTTGATTTTACCTTT
GTTCCAAGCAACATGCATATTGTAACCAGTTCCAGGACCAATTCCAACAG
AATCATAGTTAGtttcctccaaatttggccaaaaactaTTATGATCATAA
CGATGtaaggaaaaatataaaactcttgGATCATCATCAAACATTTTGTG
TGTGGCATTACCATAGTGTACATCCCAGTCTAAAATCAAAACTCTTGTCA
ATTGATACTTTTCAATAGCCATCACTGCAGCTAGTGCAACATTATTCAAA
TGACAAAACCCCATTGATTGCTCTCTAGTAGCATGATGACCAGGTGGTCT
CACAATTGCAGCTCCATTCTGTAAAttacctttcaaaatttgatcaaCTA
ATTCTAATGTACAACCAGCCGATAACAAAGCACTTTCAGTCAAANTTCTT
GTCAGTTGATACTTTTGAATAGCCATCACTGCAGCTAGTGCAACATTATT
CAAATGACAAAACCCCATTGATTGCTCTCTAGTTGCATGATGCCCAGGTG
GTCTAACGACCGCAGCTCCATTCTGTAAAttacctttcaaaatttgatca
aCTAATTCTAATGTACAACCAGCAGATAATAAAGCACTTTCAGTCAAATC
TTTGTGAAGATAAATTGAGTTTAAGTCACAAGCTAGTCGGTCCAATTCTT
CTTTATCCTTATCAACCAAAGACATAATAAAATCATAATGATCCTCGGTG
TGTTTAGTAATAATCTCCTCTTTATGTGCTGGCCTTGATTTCAAAACAGT
ACAACGTTCTGTTAACCCTTCATCGATAAGTTTCTGGTAAATCCTACTAA
TTCTTTCGGGACATTCTGGGTGTTGAAACTCACATGAATATAACGTCATT
TTTTCATCGTATATCAATCCAGTCTTGGAAGATGGCTTTTCATCTGGCTG
GGAAACAACTGGTAGTTCTTTAGTacgtttttcatctttttttccaATAT
GCTTTTCTACATTGTCGTCGGTGATTGAAATGCCATCAAAGgcatttgaa
agatcttcaacaGACATGAAGAAGAACACAGagtatttttttatgatttg
tcACTCTAATGAAATAAAGATAAGGTAATTGCATAGAAATGGTAGAGAGA
GATAAGGGTAACAGTTTTGAAGAATTGaaggaaaatttaaacatttgaaa
aagcagTTTAGTCAATCATTTTCActcaacttgattttttttagagaata
caaaagcaaatttttttttctaaatgctTTTAATAAATGTAactaaactt
atttcttttaaacactaaatatcaaaaagtataaaactaaattctaaaaa
atttatcTGAATATGTACACTAGAAAAAATGAGGAATTAAAGTAATGTAT
AGTTAtagatatcaaaatcaaaactacaaaaatttACAACTACAAATTAT
TATGCAGCTAAGCCTGCTCAAAGATTCAAGCCTAATAAATTAGACGGAAC
AAAGAATTCAAACTCTCCAAGCAAATTCACTAACATGCAATACTGCccca
aaaatatgttttttttcagtggggctaATTACTGCTTGGATCTTACTGAA
CTGGTGTGCATGAAGCATTCACATCCCTCTGTATTGATCGTTGACAACAA
AGTTGAAGAAGATAATCCAGAtaatcaaatgaaaacaaatatgTATTTTA
GAAATCAAATTTTTACAGCAAATATTTAACACAATAAAATTATAATCCCC
CCTCATTGAATTTCCCCATTTTCCTCTTCTTCTTCTGAGTCAATACCTTC
TTCAATGGGTTCTTGCTCATCCAACAAAGACCTCAATTCATTATACTGTT
CTTCTAATGGTTCCAATGTATTCTGCCAATATGGTAAAAGAGCAAAGAAG
GTATTACTAATGGACTTCAATGCACTATCAGAAGGTTGCGTATCACTAAC
ATCTAATTCTGGATCTGGTTTTACTTCGTCACCAAGAAGGGTAGACACAC
AGCTTGCCATTGATGTTGAAATGGTATCAAGATTATAACCACCTTCTAGA
ATAACTGCAACTTTACCACCAGCAAAGTCCATTAATTTTTTAGTCATTTG
AGCATATCCATAGGGAGTAACTTTACATTTTCCTAACGGATCATTAATTC
CAGCATCAAATCCTGCAGATACAAGAACTAACTCTGGATCAAAtctttta
agaattggtatcAAAAGGTTATCAAAGGCATATAAATAAGCACTAGActt
aattttacttttattcCAGGCTACATGAACATTATAGCCTTTACCAGACC
CTGTTCCAACATGATCATAATTAGCTTCAGTCTGGTGTGGCCAATATTTT
GTATAGTTGTATCTGTGCAAAGAAAAGTACAAAACTCTTGGATCATCATC
AAACATTTTGTGTGTGGCATTACCATAGTGTACATCCCAgtctaaaatca
aaattcttGTCAGTTGATACTTTTCAATAGCCATCACTGCAGCTAGTGCC
ACATTATTTAAATGACAAAATCCCATTGATTTCTCTCTAGTTGCATGATG
ACCAGGTGGTCTAATGATTGCAGCTCCATTTCGTAAATtccctttcaaaa
tttgatcaaCTAATTCTAAAGCACAGCCAGCGGATAGCAAAACACTTTGT
GTAAGATTTTGGTGAAGATAAATTGAATTTAAATCAATAGCCATCATCTC
AAGATCGTGTCTCTCCTTTTCAGACAGTGACATTATAAAATTGTAATGTT
CCTCTGTGTGTTTGACaacaatttcttcttttgatgcAAATCTGGATTTT
AGTTCAACACACCTAGAAACAAGATTTTGATCCAACAATCTTTGGTAAAT
TCGACTTATCCTCTCTGGACATTCTGGATGAGGTTTTTCTTCTGTATACA
TATGGAAAGGTAGTTCACAATGATAAGAGCTCATCCGTTCATCATAAATA
AGACCTGTGTTGATACCAGgagttttcttttccttttcagCCATCCTGTA
TTGATTATTTGTCTTTTTCTAATGagtgtattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021632-exon-sc0000391-1491911889:22315..23257 | TCONS_00021632-exon-sc0000391-1491911889:22315..23257 | Clytia hemisphaerica | exon |
| TCONS_00021632-exon-sc0000391-1510915933:22315..23257 | TCONS_00021632-exon-sc0000391-1510915933:22315..23257 | Clytia hemisphaerica | exon |
| TCONS_00021632-exon-sc0000391-1575043694:22315..23257 | TCONS_00021632-exon-sc0000391-1575043694:22315..23257 | Clytia hemisphaerica | exon |
| TCONS_00021632-exon-sc0000391-1491911889:25470..25947 | TCONS_00021632-exon-sc0000391-1491911889:25470..25947 | Clytia hemisphaerica | exon |
| TCONS_00021632-exon-sc0000391-1510915933:25470..25947 | TCONS_00021632-exon-sc0000391-1510915933:25470..25947 | Clytia hemisphaerica | exon |
| TCONS_00021632-exon-sc0000391-1575043694:25470..25947 | TCONS_00021632-exon-sc0000391-1575043694:25470..25947 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000391 | supercontig | sc0000391:22315..25947 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00021632 vs. Swiss-Prot (Human)
Match: HDAC6 (Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2) HSP 1 Score: 312.383 bits (799), Expect = 2.344e-94 Identity = 148/361 (41.00%), Postives = 226/361 (62.60%), Query Frame = -1
Query: 267 NTGLIYDERMSSYHCELPFHMYTEEKPHPECPERISRIYQRLLDQNLVSRCVELKSRFASKEEIVVKHTEEHYNFIMSLSEKERHDLEMMAIDLNSIYLHQNLTQSVLLSAGCALELVDQILKGNLRNGAAIIRPPGHHATREQSMGFCHLNNVALAAVMAIEKYQLTRVLILDWDVHYGNATHKMFDDDPRVLYFSLHRYDHNSFWPNLEETNYDSVGIGPGTGYNMHVAWNKGKIKSTAYLYAFNNLLIPVLEDYEPELILISAGFDAGVGDPLGGCKVTPYGYAEMTKRLMKFANGKVALALEGGYNLSTISRAMASCVLTLLGDSVEPDFTDKPGPPSDSALRSICDTYFAHLPYWK 1349
TGL+ DE+++ +HC + PE PER+ I ++L+ + L+ RCV ++RFA KEE+++ H+ E+ + + + +L ++A +S+YLH N L++G L LVD +L +RNG AIIRPPGHHA G+C N+VA+AA A +K+++ RVLI+DWDVH+G T FD DP VLYFS+HRY+ FWP+L+ +N+ + G G G GY ++V WN+ ++ Y+ AF ++L+PV +++P+L+L++AGFDA GDP G TP G+A++T LM A GK+ L+LEGGYNL ++ +++ + TLLGD + PG P SA S+ A P+W+
Sbjct: 85 GTGLVLDEQLNEFHC-------LWDDSFPEGPERLHAIKEQLIQEGLLDRCVSFQARFAEKEELMLVHSLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNSYSCACLASGSVLRLVDAVLGAEIRNGMAIIRPPGHHAQHSLMDGYCMFNHVAVAARYAQQKHRIRRVLIVDWDVHHGQGTQFTFDQDPSVLYFSIHRYEQGRFWPHLKASNWSTTGFGQGQGYTINVPWNQVGMRDADYIAAFLHVLLPVALEFQPQLVLVAAGFDALQGDPKGEMAATPAGFAQLTHLLMGLAGGKLILSLEGGYNLRALAEGVSASLHTLLGDPCP--MLESPGAPCRSAQASVSCALEALEPFWE 436 HSP 2 Score: 298.516 bits (763), Expect = 1.768e-89 Identity = 156/363 (42.98%), Postives = 228/363 (62.81%), Query Frame = -1
Query: 264 TGLIYDERMSSYHCELPFHMYTEEKPHPECPERISRIYQRLLDQNLVSRCVELKSRFASKEEIVVKHTEEHYNFIMSLSEKERHDLEMMAIDLNSIYLHQNLTQSVLLSAGCALELVDQILKGNLRNGAAIIRPPGHHATREQSMGFCHLNNVALAA--VMAIEKYQLTRVLILDWDVHYGNATHKMFDDDPRVLYFSLHRYDHNSFWPNLEETNYDSVGIGPGTGYNMHVAWNKGKIKSTAYLYAFNNLLIPVLEDYEPELILISAGFDAGVGDPLGGCKVTPYGYAEMTKRLMKFANGKVALALEGGYNLSTISRAMASCVLTLLGDSVEPDFTDKPGPPSDSALRSICDTYFAHLPYWKN 1346
TGL+YD+ M + HC L + HPE P+RI RI RL + L RC+ L R A++ E++ H+ E+ + + + + +L + + +SIY+ + L+ G A LV+ +L G + NGAA++RPPGHHA ++ + GFC N+VA+AA I + L R+LI+DWDVH+GN T MF+DDP VLY SLHRYDH +F+P +E +G GTG+ ++VAWN ++ YL A++ L++P+ ++ PEL+L+SAGFDA GDPLGGC+V+P GYA +T LM A+G++ L LEGGYNL++IS +MA+C +LLGD + PP AL SI +T H YW++
Sbjct: 481 TGLVYDQNMMN-HCNL------WDSHHPEVPQRILRIMCRLEELGLAGRCLTLTPRPATEAELLTCHSAEYVGHLRATEKMKTRELHRESSNFDSIYICPSTFACAQLATGAACRLVEAVLSGEVLNGAAVVRPPGHHAEQDAACGFCFFNSVAVAARHAQTISGHAL-RILIVDWDVHHGNGTQHMFEDDPSVLYVSLHRYDHGTFFPMGDEGASSQIGRAAGTGFTVNVAWNGPRMGDADYLAAWHRLVLPIAYEFNPELVLVSAGFDAARGDPLGGCQVSPEGYAHLTHLLMGLASGRIILILEGGYNLTSISESMAACTRSLLGDPPPLLTLPR--PPLSGALASITETIQVHRRYWRS 833
The following BLAST results are available for this feature:
|
