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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021680 ID=TCONS_00021680|Name=TCONS_00021680|organism=Clytia hemisphaerica|type=transcript|length=1641bp
GTCGCATTCGCTAAAACGACTATATATAGTTGTTTACACGATATCATGGC
GGTCTATTTACAATGAAAAATTACCACAGcataaattttttattaaaaaa
gtcaactaattgatttttctttacaaCAGAGCTGTTACCAAGagacaaaa
taatttatccCACTTGTACTGTATACGTATACTATGGCTGAGGGCAAGTA
ATTAATACTGTAGTAATTTGTTACCGttagatcgggtaacttgcatcaat
ggaggctaacatgcatagccctgaaatgaatgacctggctggtcattaaa
atttcaaaacaaatgaaatacgcagctccgctcgcagctctactctacca
tttttgttttgatttaactttgtATTTTAATGACCAGCCATGTCATTCAt
ttaagggctatgcatgttagcctccactgatgcaagctacccgatctcac
ggtattcaATAGACTATAAAGTATTTGCCTAAAAGTCTTATAGAATTTGC
TTGGGATCAGTTGTGTTCTAGAAGCTTTAAAAAATGGGACCGTCGGTCGG
TAGCTATAAttagaactttttttttctttttcccaaACAAAAAACTGCAA
TTTTTGAAATCCTCTATTCCTCAAGCAATTCTGTTTAATAAAAATTGTTG
GTCTGATCAAANTAAAAAATGGGTCCGTCGGTCGGTAGCTATAAttagaa
ctttttttttctttttcccaaACAAAAAACTGCAATTTTTGAAATCCTCT
ATTCCTCAAGCAATTCTGTTTAATAAAAATTGTTGGTCTgatcaaaaaat
tgattaaaatagtTCAGTTGAATTCAATGTATTCAATACTTTACAGAATG
ATAATATAAAATAGTTGAACCTTGTTTttgtagtaaaaaaaaaaagattc
aacaagactaaaaaacaaagacagaTAGAACAATGAGAAGGAGCGTGTAT
ATACCCATCAGAAGgtgaaaagatgaaaaaaattattccaaTCCATATTT
TAAGTTATGATTTTATTGCATATAAGTTTATAAAAGACAAACCTTGAAAG
TAAAGTTTTTCCTGCCTGAAACTGAGTCACCAATGTCCAGGAACTCAATG
TTGGTGTTAAAAGAACGAGCATCCGCTACGTTTGTCATTAAATATTCAGA
GCTATAGCGTAGTCGAATGAACGTCCTGTCTATCCTTTAAAAAGAGTACA
TCGATAATCATTAATTAAGGCTAATTAAGATGATTGATTGTCAAACCATT
TCATGTTCGATCGATCGTTAAGTCAATTGATGATCAATAGATATTCAAGA
TTTTAGAATAGGCTTGCTTACCTATCCATTATTGGAATTAATCAATATCC
CATCCATCGATTGGTCATCGTTATCGATGAAAAAATGTATCGATTGTAGC
TAATGTTTATCGAGTGGGAGAGCCTGGTTTGACCAAGGTTTGACTGCTTT
AAAAACATCGACAAGAAAATATCTAGCTGTCTAGTGTACACATCTGTACT
AATTCATAAATGCCTTTGATAGGAAATTCCCTGGGTTATTCCCTGACACG
TAAATCAATGGATATCAAATTTATTTGATTAGTTTCGTATAATTTTTAAT
TGGGAAAAGATCACAAGGAAAGTCTGGAACGGCCAATCAAT Run BLAST on NCBI transcript from alignment at sc0000391:294491..296131 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021680 ID=TCONS_00021680|Name=TCONS_00021680|organism=Clytia hemisphaerica|type=transcript|length=1641bp|location=Sequence derived from alignment at sc0000391:294491..296131 (Clytia hemisphaerica)
ATTGATTGGCCGTTCCAGACTTTCCTTGTGATCTTTTCCCAATTAAAAAT
TATACGAAACTAATCAAATAAATTTGATATCCATTGATTTACGTGTCAGG
GAATAACCCAGGGAATTTCCTATCAAAGGCATTTATGAATTAGTACAGAT
GTGTACACTAGACAGCTAGATATTTTCTTGTCGATGTTTTTAAAGCAGTC
AAACCTTGGTCAAACCAGGCTCTCCCACTCGATAAACATTAGCTACAATC
GATACATTTTTTCATCGATAACGATGACCAATCGATGGATGGGATATTGA
TTAATTCCAATAATGGATAGGTAAGCAAGCCTATTCTAAAATCTTGAATA
TCTATTGATCATCAATTGACTTAACGATCGATCGAACATGAAATGGTTTG
ACAATCAATCATCTTAATTAGCCTTAATTAATGATTATCGATGTACTCTT
TTTAAAGGATAGACAGGACGTTCATTCGACTACGCTATAGCTCTGAATAT
TTAATGACAAACGTAGCGGATGCTCGTTCTTTTAACACCAACATTGAGTT
CCTGGACATTGGTGACTCAGTTTCAGGCAGGAAAAACTTTACTTTCAAGG
TTTGTCTTTTATAAACTTATATGCAATAAAATCATAACTTAAAATATGGA
ttggaataatttttttcatcttttcacCTTCTGATGGGTATATACACGCT
CCTTCTCATTGTTCTAtctgtctttgttttttagtcttgttgaatctttt
tttttttactacaaAAACAAGGTTCAACTATTTTATATTATCATTCTGTA
AAGTATTGAATACATTGAATTCAACTGAactattttaatcaattttttga
tcAGACCAACAATTTTTATTAAACAGAATTGCTTGAGGAATAGAGGATTT
CAAAAATTGCAGTTTTTTGTttgggaaaaagaaaaaaaaagttctaaTTA
TAGCTACCGACCGACGGACCCATTTTTTANTTTGATCAGACCAACAATTT
TTATTAAACAGAATTGCTTGAGGAATAGAGGATTTCAAAAATTGCAGTTT
TTTGTttgggaaaaagaaaaaaaaagttctaaTTATAGCTACCGACCGAC
GGTCCCATTTTTTAAAGCTTCTAGAACACAACTGATCCCAAGCAAATTCT
ATAAGACTTTTAGGCAAATACTTTATAGTCTATtgaataccgtgagatcg
ggtagcttgcatcagtggaggctaacatgcatagcccttaaaTGAATGAC
ATGGCTGGTCATTAAAATacaaagttaaatcaaaacaaaaatggtagagt
agagctgcgagcggagctgcgtatttcatttgttttgaaattttaatgac
cagccaggtcattcatttcagggctatgcatgttagcctccattgatgca
agttacccgatctaaCGGTAACAAATTACTACAGTATTAATTACTTGCCC
TCAGCCATAGTATACGTATACAGTACAAGTGggataaattattttgtctC
TTGGTAACAGCTCTGttgtaaagaaaaatcaattagttgacttttttaat
aaaaaatttatgCTGTGGTAATTTTTCATTGTAAATAGACCGCCATGATA
TCGTGTAAACAACTATATATAGTCGTTTTAGCGAATGCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021680-exon-sc0000391-1491911889:294491..296131 | TCONS_00021680-exon-sc0000391-1491911889:294491..296131 | Clytia hemisphaerica | exon |
| TCONS_00021680-exon-sc0000391-1510915933:294491..296131 | TCONS_00021680-exon-sc0000391-1510915933:294491..296131 | Clytia hemisphaerica | exon |
| TCONS_00021680-exon-sc0000391-1575043694:294491..296131 | TCONS_00021680-exon-sc0000391-1575043694:294491..296131 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000391 | supercontig | sc0000391:294491..296131 . |
Blast
The following BLAST results are available for this feature:
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