TCONS_00021690 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021690
Unique NameTCONS_00021690
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2397

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021690 ID=TCONS_00021690|Name=TCONS_00021690|organism=Clytia hemisphaerica|type=transcript|length=2397bp
CTTTCTTCCCGTAACATTGTCTCAGTGGGaatgaagaaataaaattagAC
TTGATTTATTGTCAAAAACTAGCTTTTACTTTCTTACAGATCTACACTAT
CCTATATCATGGTTCTATCCCTGAACGTACAGAACTACGTCGAAAAATGA
TGCGAATCAAGAGATACAGCCATGGTTTTGTTAGTCTTCCTGTCATTATA
TCCTCATACGAAATCCTCATGAGGGACAGACAGCTCTTAGAAACATACAA
TATTGAATGGAAATTTCTGATCGTAGATGAAGGACACAGGATAAAGAATC
TGAATTGTAGATTAATCAAGGAGCTGAAGCTTTATAAAACAGCAAACCGC
CTACTTTTAACTGGTACTCCACTGCAAAACAATTTATCAGAACTGTGGTC
CCTGCTCAACTTCTTACTTCCTGATATCTTTGACGACTTGAACAGTTTCC
AAACATGGTTTGATTTCGGTGCTATCACAGACGGTGGAGAAGACAATGAA
AAATTGATCgaacaagaaaataaagacaGTGTTTTGCAGACTCTCCACTC
CATTTTGACACCATTTCTTCTGCGTCGGTTAAAAACAGATGTCGACTTGA
CCATTCCGCCGAAGAAAGAAGTCTACGTTTACGCTCCATTGACAGAGAAA
CAACAAGTTTTTTACAGAACTACGCTTGATCGCACCATCATGGATATGTT
AGAGAAGAACAAGAAAAAACAGGAAGAACCTGTAGAATACACAGCATCCG
GGCGCGTGAAAAGGAAAACAGCTTCTAACATCACCTACAAAGAAGAGGAC
GATTCGCAAGACATTGACATCGATCTTCTCTTCGAACAAATGGAAGAGCA
AGAGAGAAAGAAACAAGAGCAAGAGTTGTTGatgaaacaaaaactaaaac
CCAAATCTCTGGTCAACATCAAAATGCAGAACACGATGATGCAGCTCAGG
AAATGTTGTAACCATCCATACCTCTTGGAATATCCTTTTAACCCTGACAA
CAACGAGTTGGTCATCAATGAGGATCTGGTCAAAGTCTCTGGCAAAATGT
TGGTTCTTGATCAAATGTTACCTGCTTTGAGAAAGCGTGGACATAAGgtt
ttgattttctcacaaATGACAACAATGTTGGATATCATAGGTGATTATTG
TGGAATTCGTGGTTATAAATACTCCAGGATTGATGGTACCATGGGCATCA
AAGATCGACAACAAATGATTGAAGATTTTGCAGCTGATGAAGaaaccttt
ttgtttttgttgagtACACGTGCTGGAGGTCTGGGTTTGAATTTAATGAT
GGCTGACACTTGTATCATCTATGACAGTGACTGGAATCCTCAAGTTGATT
TACAAGCGCAAGATCGTTGTCACAGGATTGGGCAAACGAGACCAGTGATC
ATTTATCGGTTCGTGACAGCCAACACAATCGATCAACGGATTATTGAACG
AGCTTCGAGTAAAAGAAAATTGGAGAAAATGATCATACACAAAAAAAATT
TCAAAGGTCAAAGTGCAACTGCAATTTCACCATCAGAACTATTAGATCTG
TTGAAATCCAATGATTTTTCGTCCTCTGTTGACACCGGTGGTCACGTGTT
CACCGACGAACAGCTTGATAGACTTCTTGATCGATCTGATATGATGCCAG
GCTCGTCGTCTCCAGATGATGTTGGTGATCAAAAGAAAGCTAATGTTTCA
CATGAAAATGACGAGAATAATAATAACGATATCAGTggtaatcaaaattt
caaagttattgATATTACGCACGGGGAGAAAGTCGAGTTTTGATAATAGT
GACTTATATGGCGTTCTGGAATGTATTCAAAGTTGCATACAGGTATTAGT
ACATTGGATGTTTATTGCAATCTTGGAATTAAATGTTTCATGGCAAGTTT
AATATCCCTTTGCAAATTGGATTTACGAGACATCAAACTTGCAATCATGT
TTGACGCAAGTAGCTTGAATTTCACATGGAATTGAACCTGTTATGTGTTA
TGTACGCGAACTGTAGTTTGATTGGCATTTGAAGGTGAAATGCGACATGT
GAGTTTAGTTAATATTTTCGATAATTTTGACCATCTGACTAATTTGCTGA
TCAAGCATTTTATTCCTTGGTCAGCAATTTAATTTAATGGCCTTCAATTA
CACAATGTACATGACTTGTTTTGGTTGAACATTTTAACTTTAAAAGAGAA
ACCCGAGTCGAGTTATAGAGTTTATGAATGTTAAAGATTTTTCGATAAAT
TAGGCTTTTATTACCTTCCCTTGCCACAGCATTGTAAAATTTAACACCGC
CCTTTCCCGCCAATGGACCATTCTCTTCGTAATTTTACCACACCCTCCCG
TAACCCTAACTTCCCCTATTCTAAGcttattaaaaatatttctcaac
Run BLAST on NCBI

transcript from alignment at sc0000393:74594..86259+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021690 ID=TCONS_00021690|Name=TCONS_00021690|organism=Clytia hemisphaerica|type=transcript|length=11666bp|location=Sequence derived from alignment at sc0000393:74594..86259+ (Clytia hemisphaerica)
CTTTCTTCCCGTAACATTGTCTCAGTGGGaatgaagaaataaaattagAC
TTGATTTATTGTCAAAAACTAGCTTTTACTTTCTTACAGATCTACACTAT
CCTATATCATGGTTCTATCCCTGAACGTACAGAACTACGTCGAAAAATGA
TGCGAATCAAGAGATACAGCCATGGTTTTGTTAGTCTTCCTGTCATTATA
TCCTCATACGAAATCCTCATGAGGGACAGACAGCTCTTAGAAACATACAA
TATTGAATGGAAATTTCTGATCGTAGATGAAGGACACAGGATAAAGAATC
TGAATTGTAGATTAATCAAGTAAGATAAATTTATTCAGTGCATTCAAAAC
TGCTTGGCCTACAATCtgatattgagaattttggtcaTTGTctcattttc
gaaatttgaagtttGGGCAAGAAAGTTGCTTTTGGGCGATCGAATATTAC
AAATTGGGAGGGTTTTAtaggcttccaggctatattttgagccttttttt
atcattcttgaacttttggatcatcagatcctaaggtcgtaagtcttaag
tctagcgttaaaactctactatTCCAATCTAAGTCTAGAGAGCTTACATT
TACAAATCGTTTATGGGCTTTTTTCTAAATATGACGACCTTGGTTGTATG
TGAAACGAGTCTGGTACACAACATTGATAATTGTGAAATAGAAATTGTCT
GTCAttgtttaaagggacataacagtacttgcgaaatttgtaaacaaact
gtatgcagcggatacaaaatcaaaacaaatgtcacatgtcaaaataaaaa
atcaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggacacgtgattttaattgt
tctctttaatgacacgtggttcacgcaatgtttacattttactactttta
tgtccctttaaagtaCAAGATCCAAACCTTACATtgttgaaaaaacattt
taggAATCGTTTTTTGATATTACTTGTTGGACATAAGATAAAGAATCTGA
CTACTAACCAAGCGAAATGTATGTAAATGGATAAGTAGTAATATTAAAAA
TCGCTtgtcaaaatgtttttctctctTGTAAGGGTTGTATCTTCGATTTT
ACAATAAGTAGCTGACAATGAATGTAAAAGACTTTCTGGTAGTTGGTTTG
ATTATATTTCTTGCTGATATCTCTAAACATTTTCATTCCATTATAGGGAG
CTGAAGCTTTATAAAACAGCAAACCGCCTACTTTTAACTGGTACTCCACT
GCAAAACAATTTATCAGAACTGTGGTCCCTGCTCAACTTCTTACTTCCTG
ATATCTTTGACGACTTGAACAGGTTGGTGCACTTACTGGACTAGATTTTT
TTATCAACTCTCCATATTGGGAtgttccataaaatttccaaaCAGGGGAG
TGGACAAACCTTTTaagtcaaaacaaatttctttgaaatgtctggatacc
ccctggaaaatggcaaaatctgcgaaaatacccttggaaaaattctttgc
ATACCTtgaagtgagggtggacgaactaaaatcagtcttctaccccctgg
aaatttaagaataactttttaccccttttaaaaaatgaaatagcatggaa
tagcccatttcaTTCTACTGAATACAGAACACGTGCCTGCAATCAAACAA
ATAATCTGTTAGTAACTAGTATAGGAATAATTTCATTCTCTTGCTCATAC
TTCATAGTTTCCAAACATGGTTTGATTTCGGTGCTATCACAGACGGTGGA
GAAGACAATGAAAAATTGATCgaacaagaaaataaagacaGTGTTTTGCA
GACTCTCCACTCCGTAAGATGACAAATATATAAAATCATTCCCTGTAGCA
GGGGGGCCAACCCTTAGAATCCGTAGCATTTTTCCTGGGACTCGACTGAA
TTTGACTGGATTCGAAAGTAGATAGGAATTTGAGACTTTTTCAGGGGGCG
CAAATTAGGCCTCTTTTTATGGCTAAAAAACTGACGTGTACTACAGCAAG
TCTTATACTCAAACACACAAAAAGATATGGCCATTTAAAGTTCGAAATCC
TGTGAAATCTGTTAcgttttagacaaaatttgacgtcaaccgTACTTTAA
CTGACAGTATTTTGAACTTCAAAAGCCTTGTATTTCTTTACATGTTTGAG
TACACGACTTGTTGTAGTTTTAGGTTTTAGTTTGCTTTTTATTTAATGCG
TTAATATCACGTTATCGTGGCTACTGTACACAAGTAATGTAAATAATTTG
GTTTACAGACAGGAGAAAATGTTATTACTCAGTAAACATAACTAAGGGGT
GTGACcattgacctttatataccctggaccaagtttctcaatccaggcca
agcaaaatctttgatcggagttaaagtgataccctaatggcggcactact
caatagcggggtaatgcatcgagagcgctaggtctactttccctcgaaag
CTTTTGATGAtatagcgccgttagacgttaatttttNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNaattctaattattcgttttataaataggtaggtccattaaag
tattacttgttaacactgcaatggcttctttacgggtaccaattcaaaaa
agcttggcccagggatatataaaggtcagtgggtgtGACAGGCTACGGTA
CAAGTATTAAAAATTTCAACTGTTTCACATCTTTTAGATTTTGACACCAT
TTCTTCTGCGTCGGTTAAAAACAGATGTCGACTTGACCATTCCGCCGAAG
AAAGAAGTCTACGTTTACGCTCCATTGACAGAGAAACAACAAGTTTTTTA
CAGAACTACGCTTGATCGCACCATCATGGATATGTTAGAGAAGAACAAGG
TATGATTATGACGGAAATACTTTGgtattttcatgattttatttttagac
aGAAGAAGGGTGTTATTTCTCTGTGAAAATAGCTGGTAACCACCTATAAG
ATAACGTGTTATATTTGATAGGCTTTtttcttatctgatattccgatggc
ggattggcggccgcccacgctaaagctctaaagggagcgggccaatttcc
catcggagaggaatgatagtcggcctttgatgtgccgcatcctcagTCGG
GTTAACAGCCCTTGTCCGtaaaggtaaaaatatttcggttggacccgcca
atccccgaaaacgagggctgggttaccagacctcccgctgcaaaatcctt
gacgcggtcttgcaaaattctttaatctaaaccttccagatgttgaaatt
ttcccgaccttcagagctttagtgtgtcgtatgaaaatttcaccatctgg
gtgccagataagctTTTTTCATTTGAACCCACAGTAGTAGCGTCCACATT
ATTGACTTTAGAATCTCcatcattttgatgaaaacttttcaaatctACAA
ACTATTTCTTTGATTGGTCGCACATAGGATAACGCAACCTATACTTCGCT
GTATATTTAACGAGAGACTTCTCTCTGATTCAGAGCGTAAAAATCTCGCA
ATTCattatatgcaccattgcaatggcTTCCACGGAcgcaacagctgatt
ggttgaaagtgacgcattgactgattttacgtcaattacaaccaatcagc
tattgggaccgtgatgtaatgtcagacattacaatggtgcatatcatgaa
tataagaccatgttcgcacgtaacGATTCCGTTTCACTCCAAagcgaaat
gaagccattctattggttagaagtgacgtaaaacttgaatgtaaccaata
gaacggcttcatttcgtttcggaacgaAACAGAATCgttacgtgcgaaca
tggtctaaagCATTTACTTTCTTGTAGAAAAAACAGGAAGAACCTGTAGA
ATACACAGCATCCGGGCGCGTGAAAAGGAAAACAGCTTCTAACATCACCT
ACAAAGAAGAGGACGATTCGCAAGACATTGACATCGATCTTCTCTTCGAA
CAAATGGAAGAGCAAGAGAGAAAGTAGGCAATTCTTTCAATACGACTGTC
ATTAAGtgttttttgatagactggatgattCTGTAGGCAAAGAGACTGGA
GGATTCTGTGGGCAAAGACCCTCTAAGGAGGATACTGTGGGCTTAAGTGG
ACTCatcgtcatcaaaaattataataaaaaaaagttgaagctAGAACTAT
ACTCAGATTTGACTGCATTTTAAGTGGTTTACGTTAAGATTTCTCTATCG
GCAGAGCTTACTCGCAAATACTTTTTATTCTTACGACTTAGTTAGCACTA
ATTAGTAATTTCCATCTGTTTAAATCTCCATCTTCATTTCGTATGTTGAT
GAATTTGCTTTCAACTCTTGAAAGAAATTTGTAGTTTTGGGGTTTTGCTG
CTAAAAGGTCTTTTTCCATATCAGCCGATCTGAAAAATTGCGTAGCCGTT
ACAAAGGTCTGCAAGATTTTGCATGTTTCTACTGGGTgtctcaaaaattg
tttgagatTGGATTAttgagattttgagaaaaagttatgaaggaaaagaa
aaaaatcaaaaaatcattcAGTTTCCTAGAATCTCTTTTTGAATCTCAAT
TCAAACTtgtacattttctttgagacaCCCGGTACTTTGACCTCTACTTC
TTTCAACCAACAATTTCTACGGAATTATTCAACAGGAAACAAGAGCAAGA
GTTGTTGatgaaacaaaaactaaaacCCAAATCTCTGGTCAACATCAAAA
TGCAGAACACGATGATGCAGCTCAGGAAATGTTGTAACCATCCATACCTC
TTGGAATATCCTTTTAACCCTGACAACAACGAGTTGGTCATCAATGAGGA
TCTGGTCAAAGTCTCTGGCAAAATGTTGGTTCTTGATCAAATGTTACCTG
CTTTGAGAAAGCGTGGACATAAGGTTAGTTTTTTGAATGAATCATTTGTT
GACACTTTGGAGTACAGTTGACTGTAATTCGAtccgatcttcaagggact
agAAATtgtattcgaattatagaaagcttTGGAATGCAGAGAGTAATTTG
TATCACTTTCCAGCTGAGTAGACAAATATTTAGTTCGAAGTACAGAACCA
ACGATTCGAAAAATAGAGATTCGAATTGGAGAGATTTGACTGTATACCTG
AAGGCTAGAAGTGATTCGTCAACCATTCCTAAGCGAAAGATAATGACACC
TTAAAGATAAGCGTATTATTGCGAAACTAAATGTTTTCCTAATAATTCAT
GATATGCACCACTGGAGAGTCTTCTGAGAACTTTTAAAATTTTCCACCCA
TTAGGTCACTTAAACAATAGAAAAAGTGACGTATTCATGATATGCATCAT
TGCAATGTCTTCTGACATTACATCATGGacccaacagctgattggttgta
agtgacgtaaaatcagtcaatacgtcacttgaaACCAATCAGCTGCTGGG
GTCcattgaagacattgcaatggtgcatataatgaattgggtgaaagaaa
aacagaaaagttgcataatttcgtgaagtcattgcagtggtgcatataaT
GAATACAATCTAAATCTTACCACACACTAATTTCaggttttgattttctc
acaaATGACAACAATGTTGGATATCATAGGTGATTATTGTGGAATTCGTG
GTTATAAATACTCCAGGATTGATGGTACCATGGGCATCAAAGATCGACAA
CAAATGGTAATTTCTTTAGTGAAAAGCGTGCTGTAGCATCACATGGttga
aaatgaatattttgcATTGCTTTTGCAAGATCACCACACAACTTCGCATA
tgtatacattttttttataagaacaaactatataagagcgtaaggcttcg
atgaccaaaatgttaagaatatgttacgaacattttaaggcttttttgac
tctgaatttcttagggaaatggacaaaaatactcaaaattggcgaaaata
agaacatgttaagaatattcttAGGCTTACAACTCAAAAAAGTCTAAGGC
TTTAAGTCtaattttgatgttcttataaaaaaagtgtaattagCTTTAAT
CCACCTTTGCAAGCGCTTGACACGTAGGCTTTCTTTACTTTACCCtactt
tttttctcatttccacCCACAGATTGAAGATTTTGCAGCTGATGAAGaaa
cctttttgtttttgttgagtACACGTGCTGGAGGTCTGGGTTTGAATTTA
ATGATGGCTGACACTTGTATCATCTATGACAGTGACTGGGTGAGTAGANG
TTTGAATTTAATGATGGCTGACACTTGTATCATCTATGACAGTGACTGGG
TGAGTAGATATAAGTAAtgagcactgacctttatatatgcCTGGGCCAAG
TtacatccgccatctttgatcggagttttttttttgaaagtgttacCAGC
TAAGAAGCCATATTGCAGTGCTAAAAATTAACGTTAAACGGTGCTAAATC
ATAAAAAGTAtgcgaggaaaagtagacctagcgcctTCGAAGcttttaca
ccgctattgagtagtgctaccattaacCATTAGCGTGTACCAAAAAAACc
tcaaacaaagattttactTGACCGGGACTGAGAAACTtcgtccagggtat
ataaaggtcagtggcaaTAAGCGTCAGGCACAGTTTTTATTACCTTTTTT
TGCTTCAAAGCNCATGAATTGGgtgaaagaaaaacagaaaagttgcataa
tttcgtgaagtcattgcagtggtgcatataaTGAATACAATCTAAATCTT
ACCAAACACTAATTTCaggttttgattttctcacaaATGACAACAATGTT
GGATATCATAGGTGATTATTGTGGAATTCGTGGTTATAAATACTCCANTA
AATGGGTATTCTTCgccacggcatgacgtcagaactggggTACGACAGAA
CAAttactaaagattaattatgtgttttcagtaaacataatcCTTTGTGA
GTTAAtccatagtgtttgttttaccctcgaaattattaaatcttattggt
tgaaaaagatgtcacatgactttccgtTGCAAAGAATATAATGGCACCAA
GACCTTACTaaccatttttggacctaccccggtggaggtcctataaattc
acctctgtccgttcgttcgttaccagcttttctcgagattggctcattag
ttttttctggttttttgcacaaagatgtgtaactataaattctcgaatgt
gacggagcccgattttcaaaaaaaaaaatttgggggcaaatttgggccaa
aaaacggctaaaaaacgggttttttggactttgNcgacaaaaatactcaa
aattggcgaaaataagaacatgttaagaacattcttaggctTACAACTCA
AAAAAgtctaaggcttcaaaaaattttgatgttcttatcaaaaaaagtgt
aattaGCTTTAATCCACCTTTGCAAGCGCTTGACACGTAGGCTTTCTTTA
CTTTACCCtacttttttttctcatttccacCCACAGATTGAAGATTTTGC
AGCTGATGAAGaaacctttttgtttttgttgagtACACGTGCTGGAGGTC
TGGGNtttttttgcatgaaagtagggtaccatcataggtaaaagatggct
caagctgatttttgcaaaaaaaatttttgttggctcaaaaaacgcatgtt
tatctataagagtcactattaataagcatacatcaatgttcttagtcaaa
ttactcaatttttttatgagatggatgttttttttgctcatgggggctta
cttttgaagaatatgtgtgtttagacatgaaattttggttacttggcgtg
tttttatagagaaACTGGCAACATTCGATANGTGAGTAGATATAAGTAAt
gagcactgacctttatatatccctgggcCAAGTtacatccgccatctttg
atcggagtttttttttgaaagtgttacCAGCTAAGAAGCCATATTGCAGT
GCTAAAAATTAACGTTAAACGGTGCTAAATCATAAAAAGTAtgcgaggaa
aagtagacctagcgcctTCGAAGCTTTTACANtgattttttgcacaaaga
tgcataactataaaccctcgaatgtgacggagcccgatattcgaaaaaaa
tgtttttgggcaaatttgggccaaaaaacggctaaaaaacgactttgtga
aatattggattattgttgttttttttcagacttttttcataaaagtaggt
aaaagatggctcaagcagatttttgtaaaaaaaaatttgttggctcaaaa
aacttatgtttatctataagaatcactattaataagcatacatcatgttc
ttagtcaaattactaaattttttgatgaaatagatgttttttttgctcac
gaagtcttgaatatgaaagaatcaTTTTAAAATGTGTTCCATTGATTGtt
ctttaattatttttaaataaaggaATTCGGAACATTTTCTCCTGCATCCA
TGTAGCAATTTTGCTCCAAAATATAACGTTGGTCTGTACCTTCCATTTGA
CTTTCTGAATATAATTGACTGTTTGTATTCATTTTTAACAATGTTTATAT
TAATTTTTAATTAGTctgtttgataaccaggtaggtctatCATAAGTATC
ACTTATCCACATTATGAGAAGAATCTTATTAAAGATTTCTCTTTTTAATG
TCCCTTTTACCCTNTCACATTATGAGAAGAATCTCATTAAAGATTTCTCT
TTTTAATGTCCCTTTTACCctgtgaattttattttttgaagtctTTTTTG
ACTaaagattttgacttttttctcaGAATCCTCAAGTTGATTTACAAGCG
CAAGATCGTTGTCACAGGATTGGGCAAACGAGACCAGTGATCATTTATCG
GTTCGTGACAGCCAACACAATCGATCAACGGATTATTGAACGAGCTTCGA
GTAAAAGAAAATTGGAGAAAATGATCATACACAAAAGTAAAAGCAACTAA
TCTTTTTACCCATGATTTTAAACAGTGGATTCTCTTTAACTCGACCCTCT
ATAACCCAAATGTCTCCTTAAACTCGGAcgagttttatggtcccttcagt
taacaattccTTATCAACCTTACTCTATAGCTCGAAATTTCCCCTATGTT
TCTCCTGGATATATTCTTAAACTAGACAACTACTTTAAATATAGTTTAAG
TTTAAGTGCAGAAATTTTAACAAACAAAGGCTCCATAACGATACACTTTC
AATTCATTTCTAGAAAATTTCAAAGGTCAAAGTGCAACTGCAATTTCACC
ATCAGAACTATTAGATCTGTTGAAATCCAATGATTTTTCGTCCTCTGTTG
ACACCGGTGGTCACGTGTTCACCGACGAACAGCTTGATAGACTTCTTGAT
CGATCTGATATGATGCCAGGCTCGTCGTCTCCAGATGATGTTGGTGATCA
AAAGAAAGCTAATGTTTCACATGAAAATGACGAGAATAATAATAACGATA
TCAGTggtaatcaaaatttcaaagttattgATATTACGCACGGGGAGAAA
GTCGAGTTTTGATAATAGTGACTTATATGGCGTTCTGGAATGTATTCAAA
GTTGCATACAGGTATTAGTACATTGGATGTTTATTGCAATCTTGGAATTA
AATGTTTCATGGCAAGTTTAATATCCCTTTGCAAATTGGATTTACGAGAC
ATCAAACTTGCAATCATGTTTGACGCAAGTAGCTTGAATTTCACATGGAA
TTGAACCTGTTATGTGTTATGTACGCGAACTGTAGTTTGATTGGCATTTG
AAGGTGAAATGCGACATGTGAGTTTAGTTAATATTTTCGATAATTTTGAC
CATCTGACTAATTTGCTGATCAAGCATTTTATTCCTTGGTCAGCAATTTA
ATTTAATGGCCTTCAATTACACAATGTACATGACTTGTTTTGGTTGAACA
TTTTAACTTTAAAAGAGAAACCCGAGTCGAGTTATAGAGTTTATGAATGT
TAAAGATTTTTCGATAAATTAGGCTTTTATTACCTTCCCTTGCCACAGCA
TTGTAAAATTTAACACCGCCCTTTCCCGCCAATGGACCATTCTCTTCGTA
ATTTTACCACACCCTCCCGTAACCCTAACTTCCCCTATTCTAAGcttatt
aaaaatatttctcaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012173XLOC_012173Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021690-exon-sc0000393-1491911889:74594..74912TCONS_00021690-exon-sc0000393-1491911889:74594..74912Clytia hemisphaericaexon
TCONS_00021690-exon-sc0000393-1510915933:74594..74912TCONS_00021690-exon-sc0000393-1510915933:74594..74912Clytia hemisphaericaexon
TCONS_00021690-exon-sc0000393-1575043694:74594..74912TCONS_00021690-exon-sc0000393-1575043694:74594..74912Clytia hemisphaericaexon
TCONS_00021690-exon-sc0000393-1491911889:75940..76065TCONS_00021690-exon-sc0000393-1491911889:75940..76065Clytia hemisphaericaexon
TCONS_00021690-exon-sc0000393-1510915933:75940..76065TCONS_00021690-exon-sc0000393-1510915933:75940..76065Clytia hemisphaericaexon
TCONS_00021690-exon-sc0000393-1575043694:75940..76065TCONS_00021690-exon-sc0000393-1575043694:75940..76065Clytia hemisphaericaexon
TCONS_00021690-exon-sc0000393-1491911889:76451..76556TCONS_00021690-exon-sc0000393-1491911889:76451..76556Clytia hemisphaericaexon
TCONS_00021690-exon-sc0000393-1510915933:76451..76556TCONS_00021690-exon-sc0000393-1510915933:76451..76556Clytia hemisphaericaexon
TCONS_00021690-exon-sc0000393-1575043694:76451..76556TCONS_00021690-exon-sc0000393-1575043694:76451..76556Clytia hemisphaericaexon
TCONS_00021690-exon-sc0000393-1491911889:78881..79042TCONS_00021690-exon-sc0000393-1491911889:78881..79042Clytia hemisphaericaexon
TCONS_00021690-exon-sc0000393-1510915933:78881..79042TCONS_00021690-exon-sc0000393-1510915933:78881..79042Clytia hemisphaericaexon
TCONS_00021690-exon-sc0000393-1575043694:78881..79042TCONS_00021690-exon-sc0000393-1575043694:78881..79042Clytia hemisphaericaexon
TCONS_00021690-exon-sc0000393-1491911889:80021..80166TCONS_00021690-exon-sc0000393-1491911889:80021..80166Clytia hemisphaericaexon
TCONS_00021690-exon-sc0000393-1510915933:80021..80166TCONS_00021690-exon-sc0000393-1510915933:80021..80166Clytia hemisphaericaexon
TCONS_00021690-exon-sc0000393-1575043694:80021..80166TCONS_00021690-exon-sc0000393-1575043694:80021..80166Clytia hemisphaericaexon
TCONS_00021690-exon-sc0000393-1491911889:80829..81066TCONS_00021690-exon-sc0000393-1491911889:80829..81066Clytia hemisphaericaexon
TCONS_00021690-exon-sc0000393-1510915933:80829..81066TCONS_00021690-exon-sc0000393-1510915933:80829..81066Clytia hemisphaericaexon
TCONS_00021690-exon-sc0000393-1575043694:80829..81066TCONS_00021690-exon-sc0000393-1575043694:80829..81066Clytia hemisphaericaexon
TCONS_00021690-exon-sc0000393-1491911889:81730..81849TCONS_00021690-exon-sc0000393-1491911889:81730..81849Clytia hemisphaericaexon
TCONS_00021690-exon-sc0000393-1510915933:81730..81849TCONS_00021690-exon-sc0000393-1510915933:81730..81849Clytia hemisphaericaexon
TCONS_00021690-exon-sc0000393-1575043694:81730..81849TCONS_00021690-exon-sc0000393-1575043694:81730..81849Clytia hemisphaericaexon
TCONS_00021690-exon-sc0000393-1491911889:82266..82382TCONS_00021690-exon-sc0000393-1491911889:82266..82382Clytia hemisphaericaexon
TCONS_00021690-exon-sc0000393-1510915933:82266..82382TCONS_00021690-exon-sc0000393-1510915933:82266..82382Clytia hemisphaericaexon
TCONS_00021690-exon-sc0000393-1575043694:82266..82382TCONS_00021690-exon-sc0000393-1575043694:82266..82382Clytia hemisphaericaexon
TCONS_00021690-exon-sc0000393-1491911889:84920..85079TCONS_00021690-exon-sc0000393-1491911889:84920..85079Clytia hemisphaericaexon
TCONS_00021690-exon-sc0000393-1510915933:84920..85079TCONS_00021690-exon-sc0000393-1510915933:84920..85079Clytia hemisphaericaexon
TCONS_00021690-exon-sc0000393-1575043694:84920..85079TCONS_00021690-exon-sc0000393-1575043694:84920..85079Clytia hemisphaericaexon
TCONS_00021690-exon-sc0000393-1491911889:85357..86259TCONS_00021690-exon-sc0000393-1491911889:85357..86259Clytia hemisphaericaexon
TCONS_00021690-exon-sc0000393-1510915933:85357..86259TCONS_00021690-exon-sc0000393-1510915933:85357..86259Clytia hemisphaericaexon
TCONS_00021690-exon-sc0000393-1575043694:85357..86259TCONS_00021690-exon-sc0000393-1575043694:85357..86259Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000393supercontigsc0000393:74594..86259 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.1189	3.80176	1.34425	0.378267	1.27748	0.55663	0.753592	4.12681	0.733492	0.80873	2.37679e-10	0.319164	1.5994	0.395471	2.23087	0.970571	4.37213	2.50756	0.489036	0.47199	2.73461	3.86058	4.21407	3.22459	3.39908	5.77296	0.496426	0.0968101	6.2351	6.15056
Blast
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BLAST of TCONS_00021690 vs. Swiss-Prot (Human)
Match: HELLS (Lymphoid-specific helicase OS=Homo sapiens GN=HELLS PE=1 SV=1)

HSP 1 Score: 518.464 bits (1334), Expect = 8.288e-171
Identity = 283/521 (54.32%), Postives = 382/521 (73.32%), Query Frame = 3 
Query:   90 IYTILYHGSIPERTELRRKMMRIKRYSHGFVSL-PVIISSYEILMRDRQLLETYNIEWKFLIVDEGHRIKNLNCRLIKELKLYKTANRLLLTGTPXXXXXXXXXXXXXXXXPDIFDDLNSFQTWFDFGAITDGGEDNEKLIEQENKDSVLQTLHSILTPFLLRRLKTDVDLTIPPKKEVYVYAPLTEKQQVFYRTTLDRTIMDMLEKNKKKQEEPVEYTASGRVKRKTASNITYKEEDDSQDIDIDLLFXXXXXXXXXXXXXXXXXXXXXXPKSLVNIKMQNTMMQLRKCCNHPYLLEYPFNPDNNELVINEDLVKVSGKMLVLDQMLPALRKRGHKVLIFSQMTTMLDIIGDYCGIRGYKYSRIDGTMGIKDRQQMIEDFAADEETFLFLLSTRAGGLGLNLMMADTCIIYDSDWNPQVDLQAQDRCHRIGQTRPVIIYRFVTANTIDQRIIERASSKRKLEKMIIHKKNFK-GQSATAIS-----PSELLDLLKSNDFSSSVDTGGH-VFTDEQLDRLL 1628
            I T+LYHG+  ER +L R + + K    G + + PV+I+S+EI MRDR  L+  +  WK+LIVDEGHRIKN+ CRLI+ELK +   N+LLLTGTPLQNNLSELWSLLNFLLPD+FDDL SF++WFD  ++++  ED   +I +E + +VL  LH ILTPFLLRRLK+DV L +PPK+EV VYAPL++KQ++FY   ++RTI +M   ++K   E +E + +GR KR+T  +I Y + DD  + +++ L  Q++ +  +++    +       +S VN+K+QN MM LRKCCNHPYL+EYP +P   E  I+E+LV  SGK L+LD+MLP L+KRGHKVL+FSQMT+MLDI+ DYC +R + +SR+DG+M   +R++ +  F  D E F+FL+STRAGGLG+NL  ADT IIYDSDWNPQ DLQAQDRCHRIGQT+PV++YR VTANTIDQ+I+ERA++KRKLEK+IIHK +FK GQS   +S     P EL++LLKS D+   +      V +D+ L+ LL
Sbjct:  297 IPTMLYHGTQEERQKLVRNIYKRK----GTLQIHPVVITSFEIAMRDRNALQ--HCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAED---IIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEK---ETIELSPTGRPKRRTRKSINYSKIDDFPN-ELEKLISQIQPEVDRERAVVEVNIPV---ESEVNLKLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDPKELMELLKSRDYEREIKGSREKVISDKDLELLL 801
The following BLAST results are available for this feature:
BLAST of TCONS_00021690 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HELLS8.288e-17154.32Lymphoid-specific helicase OS=Homo sapiens GN=HELL... [more]
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