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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021747 ID=TCONS_00021747|Name=TCONS_00021747|organism=Clytia hemisphaerica|type=transcript|length=1258bp
tttacagtcgatgtttgtttatctttatcgaccagcactatatgtagctg
ttataagcctttgtaggctaacCACAAATGAAAgctactgcaattgcagt
ataccgcaattgagggatttccctgactgacaggtgtttgtgcaaaaaac
taaacatagaaaattttccaaatctccCATTTCgataaatgaaatgaaaa
atgaaacttttctatgtttcacttttttgcacctattcttcaaaatgaaa
atatttaagattttaagttcttgttttattcaatgattttttatggcact
ttgttgacaatctaactctcgcatcaaatttccgctttcttcagtaaatt
gaagatgagaaaaaacctaagccacggatTACGGATTGAAACGaatatat
gaagggtgagattttacagccgcccctTATgtaaggcactgaaaggccac
agGTGCCCAAAAGAAGAGCCGTTTGAAATGCAGCAACCTCATTGACGTGG
AAATTTAGTAAACAGCTACGAAGGAGGTCTGGGAAGCagtcagtagaaga
gaccactttcgtttttgttgcagatttctataaaaacttttctcagggat
tacttgtcaatgtacatgtacacatgtgttgtgtcaacttgtcagcattt
gTATTGCTGTAAAGGAATAgagaaaagagggCTAACAAAAAGATAGAAAT
GGCAGCAAAGATCCAGGAACAATTACAGAAAGAAATTGatgtatttcaaa
aaatgcagaaaGACTTGCAAAAATTAGTGACTGGAAGACAACAGTTGGAT
GTGCAATACAATGAAAATAAAGTTGTGAAAGATGAATTAGATCTTGTCGA
ACCTGATTCGAACGTTTACAAATTGACTGGACCTATTCTTGTTAAACAGG
ATTTATCAGAAGCGAAATTAAACGTTGGCAAACGTCTAGATTATATACAA
AGTGAACTGAAGCGTCATGAGAAATCAATCACAGACCTTCAAGGTAAACA
GGAGAAGAAGAAAGAATCTTTAACCAAACTGCAACAGCAATATCAACAAC
TGTTACCAAAACAGGCTGCAAAATAGTTATATATCTTTCagtttttgaaa
tctaggtACCTAATTTATAtccttttgtttttgaatacaTTAAGGTCAAA
ACTGGCCAAGAAAAATTATTCATTGTTGTTGCTTTGAAACCTTTATTGAT
GATAatttgctttttctttcttgaCATGACATTTGATCAGTGCTTTGGAT
ATTAAAAT Run BLAST on NCBI transcript from alignment at sc0000394:159531..163638+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021747 ID=TCONS_00021747|Name=TCONS_00021747|organism=Clytia hemisphaerica|type=transcript|length=4108bp|location=Sequence derived from alignment at sc0000394:159531..163638+ (Clytia hemisphaerica)
tttacagtcgatgtttgtttatctttatcgaccagcactatatgtagctg
ttataagcctttgtaggctaacCACAAATGAAAgctactgcaattgcagt
ataccgcaattgagggatttccctgactgacaggtgtttgtgcaaaaaac
taaacatagaaaattttccaaatctccCATTTCgataaatgaaatgaaaa
atgaaacttttctatgtttcacttttttgcacctattcttcaaaatgaaa
atatttaagattttaagttcttgttttattcaatgattttttatggcact
ttgttgacaatctaactctcgcatcaaatttccgctttcttcagtaaatt
gaagatgagaaaaaacctaagccacggatTACGGATTGAAACGaatatat
gaagggtgagattttacagccgcccctTATgtaaggcactgaaaggccac
agGTGCCCAAAAGAAGAGCCGTTTGAAATGCAGCAACCTCATTGACGTGG
AAATTTAGTAAACAGCTACGAAGGAGGTCTGGGAAGCagtcagtagaaga
gaccactttcgtttttgttgcagatttctataaaaacttttctcagggat
tacttgtcaatgtacatgtacacatgtgttgtgtcaacttgtcagcattt
gTATTGCTGTAAAGGAATAgagaaaagaggtaagactagcctagttttta
atcctgatataggagtttaagtttagactgactgtcatcattgacaatca
aacaaacgatagtctgtcaagagccttgtaaacattccaacaactttcaT
CGAAATGATCTGCCACAGCtatgtctaccattttagcgcccggtccgagg
attgagccttGAATTGAATCTTCAGGTcagtaagtttttatttctggtCA
GTTTTAACCGATAATCGACCGCTATTTCGATCACTGAAAGTGATATAAAA
ATTCTAACAAAATGGTTAAGGGGGCTAGGGGGttcattttcatcatcaat
GCAATGATCGAAATAGCTGTCAGTTATCATTTAAGCTTCTTTCAACCACT
GCAATGATTTTAGGTGCACACTtgtaaaatttaaagtaaatagatatttc
aaaagttaaaatatatttttgtgtgTAGTAAAAAGCCAGACCTTAGGATC
TGTCACTTCTTTTGTTGAACGTCACCCCCTGCGTTTAGTTAATGAAAGTA
GATATGATTTTGAGACATTTTTGAGAAGAGGCTTGTGAATTAGGCCTGAC
AAAACTTTTTATGGTCAAGCATATGGGTGATAAATTGAAGAGTATGTtca
ctgtatttctcaaggaaaatgacgtatgttcactgtatttcccaaggaaa
ataaAGTACTTAcaaatacagagttttcccttacaaatacagagttttcc
cTTACAAATACAGACTTTTCCCTTAcaaatacagagttttcccttacaaa
tacagagttttcccttacaaatacagagttttcccTTACAAATACAGACT
TTTCCCTTATGTtcactgtatttctcaaggaaaatgacgtatgttcactg
tattttccaaggaaaatgtgAAGCATGTTCActctatttttcaaagaaaa
tgaagaatgcACACTCTGTATCTTTCAAGTAAAATTAAGTATGTTTACTA
AACGtagtcgtctaagaaaacagctttttttttttagaatcttccttaca
atctagtttttctatttataaaaagtagattgctgacgtgtggaaaggaa
tttcggcatgactgatccttttgtttcgataataacatcaaagcgggaat
taattttcttctcgattctttctttcctttttctttcttatcagttcaGG
CTTTCCCTCGCCACTctcaaagcgtggttagctcaagcggttagatcgTC
TGTCTCATATGCATGGGGCTCTGAGTACGATTCCGATGGgtgtccaattt
ttcaattcttcaattttcttttttNCGAGTTCGATTCCGATGGgtgtcca
atttttcaattcttcgattttctttttttaattctctttcttttataatg
aaggtcaattaaacaagtaactagcatatattacctccgctctagtgctg
caaataaggaaatttcagttggccggtaattttttgAGTGTAACGAGCAG
GGGGTCCGGTGGAACCATCTTAGAAAACTTTGTAGTATGTGATGACTTAG
CTTGGTTAAACACctattttagtttgaaaactgttcctcttttaattaga
agcgctatatattaagtatttatctaagcctctaatcttcaaattttaac
cggacaaaatgaaaaactgagccacagaatgaccggtagaaactacaaaa
tgaccggtaattaccggtcacctgccgttatttgcagcactgcgcTCTCT
GTctaaggtttagataagctatAATAGCATCACTTattaataagaacttt
tttaagtttttttttcttcaatcatttttttgccacaagcgattattcac
GGCTAagatatagaagaacgggtATAGGCGTTTGCGTCTGCGTTTGCTGA
CTGACAGTTTCACTTTCACTACTTTCACTAGATTCATTTTCAGCCAGTGA
GTGAGCGAGCGATTCTTTGTGAGAGAATCGTCAAATAACTTCTTTCAGAA
TCATTGAACTTCTCGTTTTATACTTAAAGGCAGAATAATAATCgatttcc
gggtcaaaatgtttggcacctgatccaatcgtttgcttatctttcttgcg
tggtcgttatttgaatttcagtattcaatgcttataaaatatgGTTTTTA
TAAGAGTATTAAACTCCTCACTATgagggaacagatcatagattcgattt
gaacgcgtaattactaatagcaattaacattacataacgcgtcgatatct
cttcactctAATGATAATGTGATATatacaaaattaaagtgatgagagaa
tcacaaaaaaaatcaagaattgaaaaattggacatCCATTGGAATCAAAC
TCGGAGCCCCATGCATATGAGACAGAcgatctaaccgcttgagctaacca
cgctttgagAGTGGTGAGGGAAAGCgtgaactgataagaaagaaaaagga
aagaaagaattgagaagaaaattaattcccgctttgatgttattatcgaa
acaaaaggatcagtcatgtcgaaattcctttccacacgtcagcagtaagg
aagattctaaaaaaaagctgttttcttagacgactaCGTTTGATGATCTT
TCAAAGTCGAATTCAAAGAAAATCTAACagttttgaacttttaaagatGA
TTATACTTCTTTGTGCGATTGTACTTGCTGTAATATACTTTTTTACTCAG
AACTCTTAGAATGTCTGACATCTTCTATGCAACAGCATGAGTCTGCTTTG
TAGATTAATTCATTACCATGATTATTAATTCTAATGTTCCAAAATCTTTt
cttaacttgaaaaattttcaataggTAAGCAAGTTTCTGCATATATAGCT
CACTAATgtttaggaaatatttttttaagggCTAACAAAAAGATAGAAAT
GGCAGCAAAGATCCAGGAACAATTACAGAAAGAAATTGatgtatttcaaa
aaatgcagaaaGACTTGCAAAAATTAGTGACTGGAAGACAACAGTTGGAT
GTGCAATACAATGAAAATAAAGTTGTGAAAGATGAATTAGATCTTGTCGA
ACCTGATTCGAACGTTTACAAATTGACTGGACCTATTCTTGTTAAACAGG
ATTTATCAGAAGCGAAATTAAACGTTGGCAAACGTCTAGATTATATACAA
AGTGAACTGAAGCGTCATGAGAAATCAATCACAGACCTTCAAGGTAAACA
GGAGAAGAAGAAAGAATCTTTAACCAAACTGCAACAGCAATATCAACAAC
TGTTACCAAAACAGGCTGCAAAATAGTTATATATCTTTCagtttttgaaa
tctaggtACCTAATTTATAtccttttgtttttgaatacaTTAAGGTCAAA
ACTGGCCAAGAAAAATTATTCATTGTTGTTGCTTTGAAACCTTTATTGAT
GATAatttgctttttctttcttgaCATGACATTTGATCAGTGCTTTGGAT
ATTAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021747-exon-sc0000394-1491911889:159531..160209 | TCONS_00021747-exon-sc0000394-1491911889:159531..160209 | Clytia hemisphaerica | exon |
| TCONS_00021747-exon-sc0000394-1510915933:159531..160209 | TCONS_00021747-exon-sc0000394-1510915933:159531..160209 | Clytia hemisphaerica | exon |
| TCONS_00021747-exon-sc0000394-1575043694:159531..160209 | TCONS_00021747-exon-sc0000394-1575043694:159531..160209 | Clytia hemisphaerica | exon |
| TCONS_00021747-exon-sc0000394-1491911889:163060..163638 | TCONS_00021747-exon-sc0000394-1491911889:163060..163638 | Clytia hemisphaerica | exon |
| TCONS_00021747-exon-sc0000394-1510915933:163060..163638 | TCONS_00021747-exon-sc0000394-1510915933:163060..163638 | Clytia hemisphaerica | exon |
| TCONS_00021747-exon-sc0000394-1575043694:163060..163638 | TCONS_00021747-exon-sc0000394-1575043694:163060..163638 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000394 | supercontig | sc0000394:159531..163638 + |
Blast
BLAST of TCONS_00021747 vs. Swiss-Prot (Human)
Match: PFD6 (Prefoldin subunit 6 OS=Homo sapiens GN=PFDN6 PE=1 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.041e-29 Identity = 54/109 (49.54%), Postives = 84/109 (77.06%), Query Frame = 3
Query: 699 MAAKIQEQLQKEIDVFQKMQKDLQKLVTGRQQLDVQYNENKVVKDELDLVEPDSNVYKLTGPILVKQDLSEAKLNVGKRLDYIQSELKRHEKSITDLQGKQEKKKESLT 1025
MA IQ++LQ E++ +Q++QKDL K ++GRQ+L+ Q EN +VK+EL L++ + V+KL GP+LVKQ+L EA+ VGKRLDYI +E+KR+E + DL+ + E+++E+L
Sbjct: 1 MAELIQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLA 109
The following BLAST results are available for this feature:
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