TCONS_00021749 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021749
Unique NameTCONS_00021749
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length744

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021749 ID=TCONS_00021749|Name=TCONS_00021749|organism=Clytia hemisphaerica|type=transcript|length=744bp
GAAGAAATTCGACATTGTTCAGTCttctttttaaaagaagttAATGATGA
TTGCATGAACTTCACtaaacttttgtatttttatagtattaaaagtaaaa
aataaaatagaaatgtctAAAGAGAAAGAAACTGATGCTGCAACAGTGCT
GTCACAAATGAGCCAACTTGTTGGTGTGACACCCACATTTGACTTTTCTC
CATCACAAGATACCATTCTTGAAGCTGATGCCATTGGTGCTACCTGTACA
TTGCAACCTTCGTCTCTTGataaCGACATTCTTTTTCCACTCTCATCTCA
ACATAATTGTTTGGTTGGAGCTAAAAAAGGTAGATGTACAGTCCATTTTT
CTGTAGTACAAACAGGATATCTCTCAGGTTCAAAAGACTATTCTCTTAAT
CTTGTGCGACGCCTCCTgcataaaaaaacatgaaacaaTATACCGCATAA
CTTGTAGCCCTGCAGGACGTTGATTAACCTTTTTGGATTTTAGGAAGGGT
ATTTATTCTACAGGTTGTATTGAAGAAGGTGGCGTTTTTTAAATAATCTT
TAATCAAGGTCGCTTTGATAAAGGGGAtgagaaatttgttttgttttttc
gttttctttcacTTCAATCCAAATACTCTcactctcaggtgcctaataaa
cagTAGGGTCTcccttaaaatctcaagatGCAGTGACTTTAAATTTTGAC
TAGTGATAGATATTGATAATTAGATAtgatttgcaaaaatttcg
Run BLAST on NCBI

protein sequence of TCONS_00021749-protein

>TCONS_00021749-protein ID=TCONS_00021749-protein|Name=TCONS_00021749-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MSKEKETDAATVLSQMSQLVGVTPTFDFSPSQDTILEADAIGATCTLQPS
SLDNDILFPLSSQHNCLVGAKKGRCTVHFSVVQTGYLSGSKDYSLNLVRR
LLHKKT
Run BLAST on NCBI

transcript from alignment at sc0000394:163702..164564+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021749 ID=TCONS_00021749|Name=TCONS_00021749|organism=Clytia hemisphaerica|type=transcript|length=863bp|location=Sequence derived from alignment at sc0000394:163702..164564+ (Clytia hemisphaerica)
GAAGAAATTCGACATTGTTCAGTCttctttttaaaagaagttAATGATGA
TTGCATGAACTTCACtaaacttttgtatttttatagtattaaaagtaaaa
aataaaatagaaatgtctAAAGAGAAAGAAACTGATGCTGCAACAGTGCT
GTCACAAATGAGCCAACTTGTTGGTGTGACACCCACATTTGACTTTTCTC
CATCACAAGATACCATTCTTGAAGCTGATGCCATTGGTGCTACCTGTACA
TTGCAACCTTCGTCTCTTGGTATTCAACACTTAACTTTGCTCTACTTTAT
GAAGAAACATTTATACAGTGTTGTGGCAAAAGTTTCTCTTTCTctctaat
gttttttttacaaacgtttatgtttttttttcttttagataaCGACATTC
TTTTTCCACTCTCATCTCAACATAATTGTTTGGTTGGAGCTAAAAAAGGT
AGATGTACAGTCCATTTTTCTGTAGTACAAACAGGATATCTCTCAGGTTC
AAAAGACTATTCTCTTAATCTTGTGCGACGCCTCCTgcataaaaaaacat
gaaacaaTATACCGCATAACTTGTAGCCCTGCAGGACGTTGATTAACCTT
TTTGGATTTTAGGAAGGGTATTTATTCTACAGGTTGTATTGAAGAAGGTG
GCGTTTTTTAAATAATCTTTAATCAAGGTCGCTTTGATAAAGGGGAtgag
aaatttgttttgttttttcgttttctttcacTTCAATCCAAATACTCTca
ctctcaggtgcctaataaacagTAGGGTCTcccttaaaatctcaagatGC
AGTGACTTTAAATTTTGACTAGTGATAGATATTGATAATTAGATAtgatt
tgcaaaaatttcg

Coding sequence (CDS) from alignment at sc0000394:163702..164564+

>TCONS_00021749 ID=TCONS_00021749|Name=TCONS_00021749|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at sc0000394:163702..164564+ (Clytia hemisphaerica)
atgtctAAAGAGAAAGAAACTGATGCTGCAACAGTGCTGTCACAAATGAG
CCAACTTGTTGGTGTGACACCCACATTTGACTTTTCTCCATCACAAGATA
CCATTCTTGAAGCTGATGCCATTGGTGCTACCTGTACATTGCAACCTTCG
TCTCTTGataaCGACATTCTTTTTCCACTCTCATCTCAACATAATTGTTT
GGTTGGAGCTAAAAAAGGTAGATGTACAGTCCATTTTTCTGTAGTACAAA
CAGGATATCTCTCAGGTTCAAAAGACTATTCTCTTAATCTTGTGCGACGC
CTCCTgcataaaaaaacatgaatgtctAAAGAGAAAGAAACTGATGCTGC
AACAGTGCTGTCACAAATGAGCCAACTTGTTGGTGTGACACCCACATTTG
ACTTTTCTCCATCACAAGATACCATTCTTGAAGCTGATGCCATTGGTGCT
ACCTGTACATTGCAACCTTCGTCTCTTGataaCGACATTCTTTTTCCACT
CTCATCTCAACATAATTGTTTGGTTGGAGCTAAAAAAGGTAGATGTACAG
TCCATTTTTCTGTAGTACAAACAGGATATCTCTCAGGTTCAAAAGACTAT
TCTCTTAATCTTGTGCGACGCCTCCTgcataaaaaaacatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012207XLOC_012207Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021749-proteinTCONS_00021749-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021749-exon-sc0000394-1491911889:163702..163970TCONS_00021749-exon-sc0000394-1491911889:163702..163970Clytia hemisphaericaexon
TCONS_00021749-exon-sc0000394-1510915933:163702..163970TCONS_00021749-exon-sc0000394-1510915933:163702..163970Clytia hemisphaericaexon
TCONS_00021749-exon-sc0000394-1575043694:163702..163970TCONS_00021749-exon-sc0000394-1575043694:163702..163970Clytia hemisphaericaexon
TCONS_00021749-exon-sc0000394-1491911889:164090..164564TCONS_00021749-exon-sc0000394-1491911889:164090..164564Clytia hemisphaericaexon
TCONS_00021749-exon-sc0000394-1510915933:164090..164564TCONS_00021749-exon-sc0000394-1510915933:164090..164564Clytia hemisphaericaexon
TCONS_00021749-exon-sc0000394-1575043694:164090..164564TCONS_00021749-exon-sc0000394-1575043694:164090..164564Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000394supercontigsc0000394:163702..164564 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.38199	3.03931	2.70301	2.4241	1.78855	1.696	2.13141	1.51651	2.12348	2.83793	3.0233	1.85491	1.85233	1.19084	1.54386	2.46499	1.54322	2.44916	0.845913	0.885187	1.2182	1.59494	1.21654	1.38252	4.41427	4.13026	0.727432	0.679293	1.17765	1.64977
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021749 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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