TCONS_00021752 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021752
Unique NameTCONS_00021752
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1111

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021752 ID=TCONS_00021752|Name=TCONS_00021752|organism=Clytia hemisphaerica|type=transcript|length=1111bp
GACACTTTTATATATGCCCTCTCTCGCATTTCAAGCCGTAAACAACAGGC
GAACTTTCAACCAAACAAGTAGAGCGTCGAAGATAAACTATGGTCGTCTG
TCAGACTGTTTTAACGGACTGTTTTTAACAAGTTAGACCTAACTAATGGC
ACGAATCTATGAAAGAACTCCACTTTGAACCACATTGAATGTTATTTCGA
AGGGTGTCAAAGAGTGACCTTTTCTTGCTGTGAAGCCAAGAAACATTGCA
ATCGGAAAGGTGTCAAATATCTTGGCATTTCATCATAAGTAGAGCTCTTC
ACTTTTTATTTGGTGGAAATTGCAGTGGGAGACTGGGTAGGAGCACGTGA
TGGAGAACGTGTTGCTGTGTATAAAAAGGAGTGGAAGTTTTGGATAGAGC
ACACACTTGTAGTAGTGGCATCAAGAGAACACACCTCTTCACACAATCAT
CCACTagtaaacaacaacaaacaacaaaatgacGTCCTCAATCAAGCTCT
TCGCAACTTTCTTCATCCTTGCTTCCATTTACACGGACATTTCTTTGGCA
CAAGGACCACGCAAGTACCATGGTTCGTCCACACCTTCCACCAAACAAAT
GAACGCTATTCGTGGTTTGAAATCCAGATGTCAAGTTTGTTTGACTATCA
AAAAAGAGATGAGTGGCAAAACCCCTGAAAATGACGACATTTGCGATGAT
AAACTGGTCCATGACGCCGAATCGtgTGAAGTCATCTTGTACGCGGTTAT
CACTCGCAAGCGCTCTTTGGACTCATATTGCAACTTCATTTGCAACAAAC
AAAATCCATCGAAGAAAGTCATCAAGAAACGTTCTTTAGACATGATGAAA
GAAATCGAGTGAACCCACTCACCAATATCCCTCCTTTTCAAGGTGGAAGG
AGGCTTCGGAAGGTGGCAAGCTGGTACTTGTGACTAAGCAGAGAGACGAC
ACATTGTTCTGCTTtcattgttttatttatttgagaaaaaggaAATAATT
ATTAACTATTGTTTTGTAGAGTAAAGATATTTGCTTGTAgacttgtaaat
tttttaggattttttgaTAACAGTAAGATAACAGACTCTTAAAGAGAATT
AAAATCTCTCC
Run BLAST on NCBI

protein sequence of TCONS_00021752-protein

>TCONS_00021752-protein ID=TCONS_00021752-protein|Name=TCONS_00021752-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
MTSSIKLFATFFILASIYTDISLAQGPRKYHGSSTPSTKQMNAIRGLKSR
CQVCLTIKKEMSGKTPENDDICDDKLVHDAESCEVILYAVITRKRSLDSY
CNFICNKQNPSKKVIKKRSLDMMKEIE
Run BLAST on NCBI

transcript from alignment at sc0000394:179357..180925+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021752 ID=TCONS_00021752|Name=TCONS_00021752|organism=Clytia hemisphaerica|type=transcript|length=1569bp|location=Sequence derived from alignment at sc0000394:179357..180925+ (Clytia hemisphaerica)
GACACTTTTATATATGCCCTCTCTCGCATTTCAAGCCGTAAACAACAGGC
GAACTTTCAACCAAACAAGTAGAGCGTCGAAGATAAACTATGGTCGTCTG
TCAGACTGTTTTAACGGACTGTTTTTAACAAGTTAGACCTAACTAATGGC
ACGAATCTATGAAAGAACTCCACTTTGAACCACATTGAATGTTATTTCGA
AGGGTGTCAAAGAGTGACCTTTTCTTGCTGTGAAGCCAAGAAACATTGCA
ATCGGAAAGGTGTCAAATATCTTGGCATTTCATCATAAGTAGAGCTCTTC
ACTTTTTATTTGGTGGAAATTGCAGTGGGAGACTGGGTAGGAGCACGTGA
TGGAGAACGTGTTGCTGTGTATAAAAAGGAGTGGAAGTTTTGGATAGAGC
ACACACTTGTAGTAGTGGCATCAAGAGAACACACCTCTTCACACAATCAT
CCACTagtaaacaacaacaaacaacaaaatgacGTCCTCAATCAAGCTCT
TCGCAACTTTCTTCATCCTTGCTTCCATTTACACGGACATTTCTTTGGCA
CAAGGTAAGTTCCTTGTTCGTGTCTCCTTCCTTATGTATCGTGGACAGTT
agtgaaaagtttttgatttaTCATCACGATCATCAGGCGCTTTTCTTATg
atcttttgttgttttgtcaCAGGACCACGCAAGTACCATGGTTCGTCCAC
ACCTTCCACCAAACAAATGAACGCTATTCGTGGTTTGAAATCCAGATGTC
AAGTTTGTTTGACTATCAAAAAAGAGATGAGTGGCAAAACCCCTGAAAAT
GACGACATTTGCGATGATAAACTGGTCCATGACGCCGAATCGGTACGTTC
CTCCCTTTGTTTAGATGTCCACTGAAACTTGTAATTCTTTTCCAAGGGTA
CCTTGTGTCTAAAAGGgtaaaaaatactgaaaaatttttgatattctttg
aatttactgtattttcttattttcagtgTGAAGTCATCTTGTACGCGGTT
ATCACTCGCAAGCGCTCTTTGGACTCATATTGCAACGTAAGTATCTCCTC
TATGATCCAAATGTTTAGCCCAATGAAAAGAACCAACCCTTAGGGGTTTT
TTTCGCCTCGGCGtggtttgcttttttttaattaCTGAGGCAATAAATAC
AAAGCAATTTCTCTAAACAAAAACTGACCGCTGTTTCGGAAGAGGTACAT
TCATGGCAATGTCTTTATGATCTTTTGTTCTATTTTTCCCAGTTCATTTG
CAACAAACAAAATCCATCGAAGAAAGTCATCAAGAAACGTTCTTTAGACA
TGATGAAAGAAATCGAGTGAACCCACTCACCAATATCCCTCCTTTTCAAG
GTGGAAGGAGGCTTCGGAAGGTGGCAAGCTGGTACTTGTGACTAAGCAGA
GAGACGACACATTGTTCTGCTTtcattgttttatttatttgagaaaaagg
aAATAATTATTAACTATTGTTTTGTAGAGTAAAGATATTTGCTTGTAgac
ttgtaaattttttaggattttttgaTAACAGTAAGATAACAGACTCTTAA
AGAGAATTAAAATCTCTCC

Coding sequence (CDS) from alignment at sc0000394:179357..180925+

>TCONS_00021752 ID=TCONS_00021752|Name=TCONS_00021752|organism=Clytia hemisphaerica|type=CDS|length=1536bp|location=Sequence derived from alignment at sc0000394:179357..180925+ (Clytia hemisphaerica)
atgacGTCCTCAATCAAGCTCTTCGCAACTTTCTTCATCCTTGCTTCCAT
TTACACGGACATTTCTTTGGCACAAGGACCACGCAAGTACCATGGTTCGT
CCACACCTTCCACCAAACAAATGAACGCTATTCGTGGTTTGAAATCCAGA
TGTCAAGTTTGTTTGACTATCAAAAAAGAGATGAGTGGCAAAACCCCTGA
AAATGACGACATTTGCGATGATAAACTGGTCCATGACGCCGAATCGtgTG
AAGTCATCTTGTACGCGGTTATCACTCGCAAGCGCTCTTTGGACTCATAT
TGCAACTTCATTTGCAACAAACAAAATCCATCGAAGAAAGTCATCAAGAA
ACGTTCTTTAGACATGATGAAAGAAATCGAGTGAatgacGTCCTCAATCA
AGCTCTTCGCAACTTTCTTCATCCTTGCTTCCATTTACACGGACATTTCT
TTGGCACAAGGACCACGCAAGTACCATGGTTCGTCCACACCTTCCACCAA
ACAAATGAACGCTATTCGTGGTTTGAAATCCAGATGTCAAGTTTGTTTGA
CTATCAAAAAAGAGATGAGTGGCAAAACCCCTGAAAATGACGACATTTGC
GATGATAAACTGGTCCATGACGCCGAATCGtgTGAAGTCATCTTGTACGC
GGTTATCACTCGCAAGCGCTCTTTGGACTCATATTGCAACTTCATTTGCA
ACAAACAAAATCCATCGAAGAAAGTCATCAAGAAACGTTCTTTAGACATG
ATGAAAGAAATCGAGTGAatgacGTCCTCAATCAAGCTCTTCGCAACTTT
CTTCATCCTTGCTTCCATTTACACGGACATTTCTTTGGCACAAGGACCAC
GCAAGTACCATGGTTCGTCCACACCTTCCACCAAACAAATGAACGCTATT
CGTGGTTTGAAATCCAGATGTCAAGTTTGTTTGACTATCAAAAAAGAGAT
GAGTGGCAAAACCCCTGAAAATGACGACATTTGCGATGATAAACTGGTCC
ATGACGCCGAATCGtgTGAAGTCATCTTGTACGCGGTTATCACTCGCAAG
CGCTCTTTGGACTCATATTGCAACTTCATTTGCAACAAACAAAATCCATC
GAAGAAAGTCATCAAGAAACGTTCTTTAGACATGATGAAAGAAATCGAGT
GAatgacGTCCTCAATCAAGCTCTTCGCAACTTTCTTCATCCTTGCTTCC
ATTTACACGGACATTTCTTTGGCACAAGGACCACGCAAGTACCATGGTTC
GTCCACACCTTCCACCAAACAAATGAACGCTATTCGTGGTTTGAAATCCA
GATGTCAAGTTTGTTTGACTATCAAAAAAGAGATGAGTGGCAAAACCCCT
GAAAATGACGACATTTGCGATGATAAACTGGTCCATGACGCCGAATCGtg
TGAAGTCATCTTGTACGCGGTTATCACTCGCAAGCGCTCTTTGGACTCAT
ATTGCAACTTCATTTGCAACAAACAAAATCCATCGAAGAAAGTCATCAAG
AAACGTTCTTTAGACATGATGAAAGAAATCGAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012209XLOC_012209Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021752-exon-sc0000394-1491911889:179357..179910TCONS_00021752-exon-sc0000394-1491911889:179357..179910Clytia hemisphaericaexon
TCONS_00021752-exon-sc0000394-1510915933:179357..179910TCONS_00021752-exon-sc0000394-1510915933:179357..179910Clytia hemisphaericaexon
TCONS_00021752-exon-sc0000394-1575043694:179357..179910TCONS_00021752-exon-sc0000394-1575043694:179357..179910Clytia hemisphaericaexon
TCONS_00021752-exon-sc0000394-1491911889:180029..180198TCONS_00021752-exon-sc0000394-1491911889:180029..180198Clytia hemisphaericaexon
TCONS_00021752-exon-sc0000394-1510915933:180029..180198TCONS_00021752-exon-sc0000394-1510915933:180029..180198Clytia hemisphaericaexon
TCONS_00021752-exon-sc0000394-1575043694:180029..180198TCONS_00021752-exon-sc0000394-1575043694:180029..180198Clytia hemisphaericaexon
TCONS_00021752-exon-sc0000394-1491911889:180333..180392TCONS_00021752-exon-sc0000394-1491911889:180333..180392Clytia hemisphaericaexon
TCONS_00021752-exon-sc0000394-1510915933:180333..180392TCONS_00021752-exon-sc0000394-1510915933:180333..180392Clytia hemisphaericaexon
TCONS_00021752-exon-sc0000394-1575043694:180333..180392TCONS_00021752-exon-sc0000394-1575043694:180333..180392Clytia hemisphaericaexon
TCONS_00021752-exon-sc0000394-1491911889:180599..180925TCONS_00021752-exon-sc0000394-1491911889:180599..180925Clytia hemisphaericaexon
TCONS_00021752-exon-sc0000394-1510915933:180599..180925TCONS_00021752-exon-sc0000394-1510915933:180599..180925Clytia hemisphaericaexon
TCONS_00021752-exon-sc0000394-1575043694:180599..180925TCONS_00021752-exon-sc0000394-1575043694:180599..180925Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021752-proteinTCONS_00021752-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000394supercontigsc0000394:179357..180925 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.633606	0.242437	0.350054	0.331075	0.133204	0.151189	0.236202	0.189364	0.103466	0.159495	0.278942	0.261345	7.37483	9.42334	5.13347	18.5731	1.99988	0.984178	0	0.0875046	0.699989	0.40072	19.391	15.5381	3.54018	1.86445	0.220952	0.144546	0.0861302	0.11628
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021752 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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