TCONS_00021764 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021764
Unique NameTCONS_00021764
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2131

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021764 ID=TCONS_00021764|Name=TCONS_00021764|organism=Clytia hemisphaerica|type=transcript|length=2131bp
TTCagcacaaataaaaaaaaagcagaaaaataatTAACCAATGAAACCAC
AATGAGGAGCAAAAGATCAAACAAAGTGCAATCATTATGTAAACATCATC
TAGATTTCAAACCCAACCCGTCACCAACATCTTCCACAGAGAAGTCTGGT
CTGTTGAGAGTACACGTCATGAAGGCTTCTGTTCACTCCCAGCATCAAAA
ACTTATGAACAATTTGAAGAAATCTTGTCGTGAAAGCGAAAATTTCGGTC
CCAATTCTTTGGTCAAACAATTACAGTCACTTGGCAAAATGTTTGCTCCT
CCCAAAAATTCTGATCTTTCTCAGATAAATGAAACACCAGCACCGCAACC
AGCTATGAAAAGAGACCAACCGTCAGAGAGAGAATTGATCGAATCTTTAA
ATTATGTTTTACCCATCGAAAAGTTCAatcatttcaaaatattgctaccC
AAGTCGAAGCTTCACGTCACAACGCCTGACGGTGAGGAAGTGATCGTGGA
GCCGTGTGACAAACACACCAAAGTCAAAGCGACGCACGAAACACACGAAG
GCCTTATGAAGCGCCACAAAACGACCAAAGATGTCCTCCAACTTTTTTCT
AAACAGAAATCGCGTCAATTGAACGCAAACAACTGGCGAAAAGACGATTC
ATTCTTCATTTATGTGTTCGAGAACAAAAAGTTCTTATTCGATAAATCAA
CCGGTGAAATCTCGTGTTTTCCAACGCCTGACGCAATGAAGCCAAAACCA
TCGAACAAAAGCAAAGGGGAGCCACCTCAGCTTGAACGAAATATTGTGGG
CAAATCGTTTGGAACATTTATAAATGACTTTTGCAAGAAGCCTGTGGAAG
GGAAAGAATACCCTTCAACCAATCAATTTAACGTTCGAAGCAATCACAAT
ATACAATTGCACGTGCTGCAACCTGTAGAACAGAAAGCAAACTTCCGATT
CGTCATTCATTCTTCTCCTTTTGGTTCGTTCATTGAGAGAGCCGGTACTT
CTCATATCGCAAcAGGAAATCGAAAACAAACAGCCAGGAAGAATAACAGt
atTCTATTGTTCGTGGTTCGATTGATTACATAAAGAATCTGGAACGAAAA
GTTCGAGAACAACTTGGTATTCCACAAGTTGAAGCATCAGAGGACCCTTT
GGATGTCATAGAAACAGCTCAACCAACGGATCACTCCCAACACCCGATGG
AACTTTCTGCTTCACAAGAAGACCACGAAGACATCACCGAGTACGAAGAG
GAGGAAGTGTATGATAACgctttcgaagatttctttcaaCTCCTCTGCAA
TCCCATCTCCTCAACCAGAACAACAAACCATGGTGACAATGAGGGAAATC
AAACGACCACCATTCAATTTCCCTCTAAAGAAGAATGCTCTCTCTTCCAG
TCCCTCTCTGCTATGGAACAGAATTTACTACGAGCAAGTCAAGAGGATGA
ACAGTTGGATCGATTTGTAAGTATCGAAGAACGATTCCAATTGAACTATA
GTGACGTCAATCTGAACAGTTTACAAGGGGAATATGTtatcaatgatgaa
aatgaaagtgaggTTCAGGACGAAGTAATGTATTCTGCAGAACAACCCAA
CATCATGAATTCACCTATCTCCAAAGACACTGATCGTGTTTTCCAATCAC
CAATCGCTCGAAATAATGAAATGCAATTATAAGACGTTGAGATGCTGATG
ATGTTTATTTGTTACTGTTGAACTCCTGTTAACTTATTTTATTAGTCCTG
TTTTAGTTTATGAATGTTTGAACTGTTACTACCTGGtctgtttcatttta
aatacTTTAGTCTGTCGAAACTTGCTCCCTTTTACCTAgcatattttttt
atgataggattttaccaaatttctattttttgtcCATATGTAGAAATAAG
AATATTGAAAAAAGTAAATCGATCTCATCGAAATTGTCAATCCAAATATT
TCAAGTTTTAAAGCTTAATCAATCCAATTTCTTTTGAATGTATCATCTCG
TCCCAACATCCTCTTTTCCAgggttcaaaataaaaaaaatgagataCAAA
GTAAAAACTTTTCAACAAAAGGAATCGGTAGATTGGAAAAACTGAATGAT
GCACATATTGAGGTGAGTAAAAGATTCTCCC
Run BLAST on NCBI

transcript from alignment at sc0000394:258353..263313+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021764 ID=TCONS_00021764|Name=TCONS_00021764|organism=Clytia hemisphaerica|type=transcript|length=4961bp|location=Sequence derived from alignment at sc0000394:258353..263313+ (Clytia hemisphaerica)
TTCagcacaaataaaaaaaaagcagaaaaataatTAACCAATGAAACCAC
AATGAGGAGCAAAAGATCAAACAAAGTGCAATCATTATGTAAACATCATC
TAGATTTCAAACCCAACCCGTCACCAACATCTTCCACAGAGAAGTCTGGT
CTGTTGAGAGTACACGTCATGAAGGCTTCTGTTCACTCCCAGCATCAAAA
ACTTATGAACAATTTGAAGAAATCTTGTCGTGAAAGCGAAAATTTCGGTC
CCAATTCTTTGGTCAAACAATTACAGTCACTTGGCAAAATGTTTGCTCCT
CCCAAAAATTCTGATCTTTCTCAGATAAATGGTATGTTTATTCATTCGTA
TTTAGTTCTGTGTCTGTACTTGTAGTGAAATCCTTAAAATCAACTCCACT
CTACACCATTTGAAGAAAGGATGTAAGTAAAGTAAATGGTATCATTCAGA
CAAATCACTTTTTTTCAGAAACACCAGCACCGCAACCAGCTATGAAAAGA
GACCAACCGTCAGAGAGAGAATTGATCGAATCTTTAAATTATGTTTTACC
CATCGAAAAGTTCAatcatttcaaaatattgctaccCAAGTCGAAGCTTC
ACGTCACAACGCCTGACGGTGAGGAAGTGATCGTGGAGCCGTGTGACAAA
CACACCAAAGTCAAAGCGACGCACGAAACACACGAAGGCCTTATGAAGCG
CCACAAAACGACCAAAGATGTCCTCCAACTTTTTTCTAAACAGAAATCGC
GTCAATTGAACGCAAACAACTGGCGAAAAGACGATTCATTCTTCATTTAT
GTGTTCGAGAACAAAAAGTTCTTATTCGATAAATCAACCGGTGAAATCTC
GTGTTTTCCAACGCCTGACGCAATGAAGCCAAAACCATCGAACAAAAGCA
AAGGGGAGCCACCTCAGCTTGAACGAAATATTGTGGGCAAATCGTTTGGA
ACATTTATAAATGACTTTTGCAAGAAGCCTGTGGAAGGGAAAGAATACCC
TTCAACCAATCAATTTAACGTTCGAAGCAATCACAATATACAATTGCACG
TGCTGCAACCTGTAGAACAGAAAGCAAACTTCCGATTCGTCATTCATTCT
TCTCCTTTTGGTTCGTTCATTGAGAGAGCCGGTACTTCTCATATCGCAAG
TATGTTATCTTTTTGTTTGAACATCGAATATCCTGACGTGGATTAATAAT
TTTTATACTCTACTATATTGTACAATCATTGACAAAACCTATGGTACAAA
GCCCACAAATGAGTTCCCTATCCCCTCCCCCCCCCTAAACAATGTTGTTG
GAGGGGGAGGTTATTGCCCTGTGTCTAAATTTGACCGCCCAGAAATGTGC
CATGATATATTGGCAACGATTGTAGTTTGAAAGATAGGAAATGAAATATT
ATTAAAAGGCAATCACCACATGGGGAACCCGATATCAGTACAAGCTAatc
acttttttctttcagcAGGAAATCGAAAACAAACAGCCAGGAAGAATAAC
AGGTGCTATACATAATTCTTTCTGTGTTACCCAAATTCTCGAAAGAATCT
ATTATTGTGTGAAGTTGACTCTAAATCGTCTTTTCGAACATGGAAATTCA
GACAGCCCAGTAATGAGAactgttttcttcttctttccacAGAGATTACA
AGGATCGTGAAGAAGAAAAGTTAATCGAGCTGATAGAGCAAATACCTAAT
CAGTATCTACCAGACAAAAAACAGCGTAATAAGGTTCAGATTGAAGCAAG
CTTGTTTAACAATTTATTTCAGTTTTTGTCTAAAAACTCAACTAGTGTTG
TATCAGTTCATTTATCAGTTACTTAGTCAGCTCAGAAAATTTTCATATGA
CCCTGATGCATGTCCTAaacaatttcatgtttttttttttttcagtattC
TATTGTTCGTGGTTCGATTGATTACATAAAGGATCTGGAACGAAAAGTTC
GAGGTTAGTAACTTATTTAGAGGAGTGACATGGTATTTTTCAGTCgtgtt
gatttaaaaaaaagtcatattCCGTAAGgttttccttcgaaaatacaaag
gatggttttccttcgaaaatacaCATCAaggttttccttcaaaaatacaa
aggatggttttccttcgaaaatacaTATCAaggttttccttcaaaaatac
aaagaaaggttttttttcgaaaatacaaaggatggttttccttcaaaaat
acaaagcaaggttttccttcgaaaatacaAAGCAaggttttccttcaaaa
atacaatgaaaggtttttttcgaaaatagaaATCAAGgttttccttcgaa
aatacaAAGCAAGgttttccttcgaaaatacaAAGCAGCGTTTTCCTTCG
AAGATTACTGAACGAAAAACGAAAAAGTGAAATGATTATCCTCCTTAGAA
CAACTTGGTATTCCACAAGCATCAGAGGACCCTTTGGATGTCATAGAAAT
AGCTCAACCAACGGATCACTCCCAACACCCGATGGAACTTTCTGCTTCAC
AAGAAGACCACGAAGAGTGAGCTCAAATTCCTTTTCTTAACGNGAACATC
GAATATCCTGACGTGGATTAATAATTTTTATACTCTACTATATTGTACAA
TCATTGACAAAACCTATGGTACAAAGCCCACAAATGAGTTCCCTATCCCC
TCCCCCCCCCTAAACAATGTTGTTGGAGGGGGAGGTTATTGCCCTGTGTC
TAAATTTGACCGCCCAGAAATGTGCCATGATATATTGGCAACGATTGTAG
TTTGAAAGATAGGAAATGAAATATTATTAAAAGGCAATCACCACATGGGG
AACCCGATATCAGTACAAGCTAatcacttttttctttcagcAGGAAATCG
AAAACAAACAGCCAGGAAGAATAACAGGTGCTATACATAATTCTTTCTGT
GTTACCCAAATTCTCGAAAGAATCTATTATTGTGTGAAGTTGACTCTAAA
TCGTCTTTTCGAACATGGAAATTCAGACAGCCCAGTAATGAGAactgttt
tcttcttctttccacAGAGATTACAAGGATCGTGAAGAAGAAAAGTTAAT
CGAGCTGATAGAGCAAATACCTAATCAGTATCTACCAGACAAAAAACAGC
GTAATAAGGTTCAGATTGAAGCAAGCTTGTTTAACAATTTATTTCAGTTT
TTGTCTAAAAACTCAACTAGTGTTGTATCAGTTCATTTATCAGTTACTTA
GTCAGCTCAGAAAATTTTCATATGACCCTGATGCATGTCCTAaacaattt
catgtttttttttatttcagtatTCTATTGTTCGTGGTTCGATTGATTAC
ATAAAGAATCTGGAACGAAAAGTTCGAGGTTAGTAACTTATTTAGAGGAG
TGACATGGTATTTTTCAGTCgtgttgatttaaaaaaaagtcatattCCGT
AAGGTTTTCCTTCGAAAAGGACAAAGGAtggttttccttcaaaaatacaa
aggatggttttccttcaaaaatacaaatcaaggttttccttcaaaaatac
aaagaaaggttttttttcgaaaatacaaaggatggttttccttcgaaaat
acaAAGCAAGgttttccttcgaaaatacaAAGCAAGgttttccttcgaaa
atacaAAGCAaggttttccttcaaaaatacaaagaaaggtttttttcgaa
aatagaaATCAAGgttttccttcgaaaatacaAAGCAAGGTTTTCCTTCG
AAATTACAAAGCAGCGTTTTCCTTCGAAGATTACtgaatgaaaaacgaaa
aagcgAAATGATTATCCTCCTTAGAACAACTTGGTATTCCACAAGTTGAA
GCATCAGAGGACCCTTTGGATGTCATAGAAACAGCTCAACCAACGGATCA
CTCCCAACACCCGATGGAACTTTCTGCTTCACAAGAAGACCACGAAGAGT
GAGCTCAAATTCCTTTTCTTAACGTTATACATACTTTTAATAgtgatttg
ttttattttcaaaattatcagtgttttcattttgaaagtAACTTTTCAAT
CGTTTTGAACTTTCTCTGATTATATTTGTTGTGATAGTTTCTGCCCACAT
CTCATTTTCAGCATCACCGAGTACGAAGAGGAGGAAGTGTATGATAACgc
tttcgaagatttctttcaaCTCCTCTGCAATCCCATCTCCTCAACCAGAA
CAACAAACCATGGTGACAATGAGGGAAATCAAACGACCACCATTCAATTT
CCCTCTAAAGAAGAATGCTCTCTCTTCCAGTCCCTCTCTGCTATGGAACA
GAATTTACTACGAGCAAGTCAAGAGGATGAACAGTTGGATCGATTTGTAA
GTATCGAAGAACGATTCCAATTGAACTATAGTGACGTCAATCTGAACAGT
TTACAAGGGGAATATGTtatcaatgatgaaaatgaaagtgaggTTCAGGA
CGAAGTAATGTATTCTGCAGAACAACCCAACATCATGAATTCACCTATCT
CCAAAGACACTGATCGTGTTTTCCAATCACCAATCGCTCGAAATAATGAA
ATGCAATTATAAGACGTTGAGATGCTGATGATGTTTATTTGTTACTGTTG
AACTCCTGTTAACTTATTTTATTAGTCCTGTTTTAGTTTATGAATGTTTG
AACTGTTACTACCTGGtctgtttcattttaaatacTTTAGTCTGTCGAAA
CTTGCTCCCTTTTACCTAgcatatttttttatgataggattttaccaaat
ttctattttttgtcCATATGTAGAAATAAGAATATTGAAAAAAGTAAATC
GATCTCATCGAAATTGTCAATCCAAATATTTCAAGTTTTAAAGCTTAATC
AATCCAATTTCTTTTGAATGTATCATCTCGTCCCAACATCCTCTTTTCCA
gggttcaaaataaaaaaaatgagataCAAAGTAAAAACTTTTCAACAAAA
GGAATCGGTAGATTGGAAAAACTGAATGATGCACATATTGAGGTGAGTAA
AAGATTCTCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012213XLOC_012213Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021764-exon-sc0000394-1491911889:258353..258683TCONS_00021764-exon-sc0000394-1491911889:258353..258683Clytia hemisphaericaexon
TCONS_00021764-exon-sc0000394-1510915933:258353..258683TCONS_00021764-exon-sc0000394-1510915933:258353..258683Clytia hemisphaericaexon
TCONS_00021764-exon-sc0000394-1575043694:258353..258683TCONS_00021764-exon-sc0000394-1575043694:258353..258683Clytia hemisphaericaexon
TCONS_00021764-exon-sc0000394-1491911889:258821..259501TCONS_00021764-exon-sc0000394-1491911889:258821..259501Clytia hemisphaericaexon
TCONS_00021764-exon-sc0000394-1510915933:258821..259501TCONS_00021764-exon-sc0000394-1510915933:258821..259501Clytia hemisphaericaexon
TCONS_00021764-exon-sc0000394-1575043694:258821..259501TCONS_00021764-exon-sc0000394-1575043694:258821..259501Clytia hemisphaericaexon
TCONS_00021764-exon-sc0000394-1491911889:259818..259854TCONS_00021764-exon-sc0000394-1491911889:259818..259854Clytia hemisphaericaexon
TCONS_00021764-exon-sc0000394-1510915933:259818..259854TCONS_00021764-exon-sc0000394-1510915933:259818..259854Clytia hemisphaericaexon
TCONS_00021764-exon-sc0000394-1575043694:259818..259854TCONS_00021764-exon-sc0000394-1575043694:259818..259854Clytia hemisphaericaexon
TCONS_00021764-exon-sc0000394-1491911889:261623..261680TCONS_00021764-exon-sc0000394-1491911889:261623..261680Clytia hemisphaericaexon
TCONS_00021764-exon-sc0000394-1510915933:261623..261680TCONS_00021764-exon-sc0000394-1510915933:261623..261680Clytia hemisphaericaexon
TCONS_00021764-exon-sc0000394-1575043694:261623..261680TCONS_00021764-exon-sc0000394-1575043694:261623..261680Clytia hemisphaericaexon
TCONS_00021764-exon-sc0000394-1491911889:262127..262250TCONS_00021764-exon-sc0000394-1491911889:262127..262250Clytia hemisphaericaexon
TCONS_00021764-exon-sc0000394-1510915933:262127..262250TCONS_00021764-exon-sc0000394-1510915933:262127..262250Clytia hemisphaericaexon
TCONS_00021764-exon-sc0000394-1575043694:262127..262250TCONS_00021764-exon-sc0000394-1575043694:262127..262250Clytia hemisphaericaexon
TCONS_00021764-exon-sc0000394-1491911889:262414..263313TCONS_00021764-exon-sc0000394-1491911889:262414..263313Clytia hemisphaericaexon
TCONS_00021764-exon-sc0000394-1510915933:262414..263313TCONS_00021764-exon-sc0000394-1510915933:262414..263313Clytia hemisphaericaexon
TCONS_00021764-exon-sc0000394-1575043694:262414..263313TCONS_00021764-exon-sc0000394-1575043694:262414..263313Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000394supercontigsc0000394:258353..263313 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.09572	2.85037	3.12312	2.41688	1.04638	1.23924	2.15996	0.993731	0.642934	1.26164	0.970196	0.45821	1.10462	1.2781	0.308331	0.769904	0.561193	1.05954	1.02315	0.505542	0.561513	0.36823	2.18957	2.35646	0	0.465401	0.497894	0.427434	1.02916	2.24426
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021764 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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