TCONS_00021770 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021770
Unique NameTCONS_00021770
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length736

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021770 ID=TCONS_00021770|Name=TCONS_00021770|organism=Clytia hemisphaerica|type=transcript|length=736bp
TGAAAATCTTTAATTGCTCAATTTTTCAAACAAGACTTTTTATTGCAGCT
AACATATTGTGAAATAAATAATCAGATGGTAAATACTTGATATGTGATGG
CTGCAGCAGCTTCGCCAATAAACAATTTTCTGGCCAAACAAATTGGTGTT
CGTGTTATACGAGGTCCTGATTGGAAATGGGGCAAACAAGATGGTGGTGA
GGGCCATGTTGGAACTGTGCGGAGCTTTGAAAGTCATGAAGAAGTAGTTG
TTGTGTGGGATAATGGAACTGCAGCAAATTATAGATGCTCTGGTGCTTAT
GATCTGCGTATCTTTGATTCAGGACCGGCTGGCATAAAGCATGACGGGAC
ACAGTGTTGTGAATGTCAATCGAATCCAATCTACGGAACTTTATGGAAGT
GTGTGGAGTGCAGTGAAGAGATGTGCAGTACTTGTTATCACAATGATCGG
CATAACTTGAGACATCGATTTCATCAACTTGTTGCTCCTGGTTCAAATAA
GGTATTGGTTGAACCACGAAGAAAGAGCAAGAAGATCACAGCTCGTGGAA
TGTTTCCTGGTTCAAGAGTCATTCGTGGTGTTGATTGGCATTGGGAATCT
CAAGATGGTGTTGCAGGAAGGCGAGGAAAGATCACAGAAATTCAAGATTG
GAGTTTGTTGCTTCCACGTTCTGCAGCTTACGTTGTGTGGGACACTGGTG
CAAAAAATCTTTATCGTTTAGGCTCTGAAGGAATGG
Run BLAST on NCBI

protein sequence of TCONS_00021770-protein

>TCONS_00021770-protein ID=TCONS_00021770-protein|Name=TCONS_00021770-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
MAAAASPINNFLAKQIGVRVIRGPDWKWGKQDGGEGHVGTVRSFESHEEV
VVVWDNGTAANYRCSGAYDLRIFDSGPAGIKHDGTQCCECQSNPIYGTLW
KCVECSEEMCSTCYHNDRHNLRHRFHQLVAPGSNKVLVEPRRKSKKITAR
GMFPGSRVIRGVDWHWESQDGVAGRRGKITEIQDWSLLLPRSAAYVVWDT
GAKNLYRLGSEGM
Run BLAST on NCBI

transcript from alignment at sc0000394:285881..287158+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021770 ID=TCONS_00021770|Name=TCONS_00021770|organism=Clytia hemisphaerica|type=transcript|length=1278bp|location=Sequence derived from alignment at sc0000394:285881..287158+ (Clytia hemisphaerica)
TGAAAATCTTTAATTGCTCAATTTTTCAAACAAGACTTTTTATTGCAGCT
AACATATTGTGAAATAAATAATCAGATGGTAAATACTTGATATGTGATGG
CTGCAGCAGCTTCGCCAATAAACAATTTTCTGGCCAAACAAATTGGTGTT
CGTGTTATACGAGGTCCTGATTGGAAATGGGGCAAACAAGATGGTGGTGA
GGGCCATGTTGGAACTGTGCGGAGCTTTGAAAGTCATGAAGAAGTAGTTG
TTGTGTGGGATAATGGAACTGCAGCAAATTATAGATGCTCTGGTGCTTAT
GATCTGCGTATCTTTGATTCAGGACCGGCTGGTTTGTAGTTTTCATTACA
TAAtagaataacttttttattcatattttgaaaaggatgggcattcatac
ctttttgtattttaaattATTAATTGGTGGATTAGTATGATGTATTTCAT
TTATTATCTCTGTTAACAGCAAATTGGAGAAAATTTTCTCTTGTTTTCCA
GGCATAAAGCATGACGGGACACAGTGTTGTGAATGTCAATCGAATCCAAT
CTACGGAACTTTATGGAAGTGTGTGGAGTGCAGTGAAGAGATGTGCAGTA
CTTGTTATCACAATGATCGGCATAACTTGAGACATCGATTTCATCAACTT
GTTGCTCCTGGTTCAAATAAGTAGGTCTTTACTACTCTGCTTTTGAGTCC
CATGACTCtatgaaacttttttataaatagtCACTGCCTCTCTTCTTAAA
ATAACAGAGGACTAAAATGGATGCTTTTCAAAATGAGAGTTTCTAACAAA
ACTCTTCTCATAATTCCAAACCTACCTACAAGGGAATCGTTCATTGAATA
cattttctgtttcaattttccAGGGTATTGGTTGAACCACGAAGAAAGAG
CAAGAAGATCACAGCTCGTGGAATGTTTCCTGGTTCAAGAGTCATTCGTG
GTGTTGATTGGCATTGGGAATCTCAAGATGGTAACTCTTTCATTTGCTTG
ATTTTTTAATCTAATTCTTTGTAATAATTTCATCAGTTTGAGGTATGTTG
TTTTGCTGGTAGCTTGGGAACATTGCGAACACAATGACAACCATCTGCCT
TTTTCAACATGTCAAAAGTAGTATCAGAAATCTCAACTGTTTTTTTAAGG
TGTTGCAGGAAGGCGAGGAAAGATCACAGAAATTCAAGATTGGAGTTTGT
TGCTTCCACGTTCTGCAGCTTACGTTGTGTGGGACACTGGTGCAAAAAAT
CTTTATCGTTTAGGCTCTGAAGGAATGG

Coding sequence (CDS) from alignment at sc0000394:285881..287158+

>TCONS_00021770 ID=TCONS_00021770|Name=TCONS_00021770|organism=Clytia hemisphaerica|type=CDS|length=2556bp|location=Sequence derived from alignment at sc0000394:285881..287158+ (Clytia hemisphaerica)
ATGGCTGCAGCAGCTTCGCCAATAAACAATTTTCTGGCCAAACAAATTGG
TGTTCGTGTTATACGAGGTCCTGATTGGAAATGGGGCAAACAAGATGGTG
GTGAGGGCCATGTTGGAACTGTGCGGAGCTTTGAAAGTCATGAAGAAGTA
GTTGTTGTGTGGGATAATGGAACTGCAGCAAATTATAGATGCTCTGGTGC
TTATGATCTGCGTATCTTTGATTCAGGACCGGCTGGCATAAAGCATGACG
GGACACAGTGTTGTGAATGTCAATCGAATCCAATCTACGGAACTTTATGG
AAGTGTGTGGAGTGCAGTGAAGAGATGTGCAGTACTTGTTATCACAATGA
TCGGCATAACTTGAGACATCGATTTCATCAACTTGTTGCTCCTGGTTCAA
ATAAGGTATTGGTTGAACCACGAAGAAAGAGCAAGAAGATCACAGCTCGT
GGAATGTTTCCTGGTTCAAGAGTCATTCGTGGTGTTGATTGGCATTGGGA
ATCTCAAGATGGTGTTGCAGGAAGGCGAGGAAAGATCACAGAAATTCAAG
ATTGGAGTTTGTTGCTTCCACGTTCTGCAGCTTACGTTGTGTGGGACACT
GGTGCAAAAAATCTTTATCGTTTAGGCTCTGAAGGAATGATGGCTGCAGC
AGCTTCGCCAATAAACAATTTTCTGGCCAAACAAATTGGTGTTCGTGTTA
TACGAGGTCCTGATTGGAAATGGGGCAAACAAGATGGTGGTGAGGGCCAT
GTTGGAACTGTGCGGAGCTTTGAAAGTCATGAAGAAGTAGTTGTTGTGTG
GGATAATGGAACTGCAGCAAATTATAGATGCTCTGGTGCTTATGATCTGC
GTATCTTTGATTCAGGACCGGCTGGCATAAAGCATGACGGGACACAGTGT
TGTGAATGTCAATCGAATCCAATCTACGGAACTTTATGGAAGTGTGTGGA
GTGCAGTGAAGAGATGTGCAGTACTTGTTATCACAATGATCGGCATAACT
TGAGACATCGATTTCATCAACTTGTTGCTCCTGGTTCAAATAAGGTATTG
GTTGAACCACGAAGAAAGAGCAAGAAGATCACAGCTCGTGGAATGTTTCC
TGGTTCAAGAGTCATTCGTGGTGTTGATTGGCATTGGGAATCTCAAGATG
GTGTTGCAGGAAGGCGAGGAAAGATCACAGAAATTCAAGATTGGAGTTTG
TTGCTTCCACGTTCTGCAGCTTACGTTGTGTGGGACACTGGTGCAAAAAA
TCTTTATCGTTTAGGCTCTGAAGGAATGATGGCTGCAGCAGCTTCGCCAA
TAAACAATTTTCTGGCCAAACAAATTGGTGTTCGTGTTATACGAGGTCCT
GATTGGAAATGGGGCAAACAAGATGGTGGTGAGGGCCATGTTGGAACTGT
GCGGAGCTTTGAAAGTCATGAAGAAGTAGTTGTTGTGTGGGATAATGGAA
CTGCAGCAAATTATAGATGCTCTGGTGCTTATGATCTGCGTATCTTTGAT
TCAGGACCGGCTGGCATAAAGCATGACGGGACACAGTGTTGTGAATGTCA
ATCGAATCCAATCTACGGAACTTTATGGAAGTGTGTGGAGTGCAGTGAAG
AGATGTGCAGTACTTGTTATCACAATGATCGGCATAACTTGAGACATCGA
TTTCATCAACTTGTTGCTCCTGGTTCAAATAAGGTATTGGTTGAACCACG
AAGAAAGAGCAAGAAGATCACAGCTCGTGGAATGTTTCCTGGTTCAAGAG
TCATTCGTGGTGTTGATTGGCATTGGGAATCTCAAGATGGTGTTGCAGGA
AGGCGAGGAAAGATCACAGAAATTCAAGATTGGAGTTTGTTGCTTCCACG
TTCTGCAGCTTACGTTGTGTGGGACACTGGTGCAAAAAATCTTTATCGTT
TAGGCTCTGAAGGAATGATGGCTGCAGCAGCTTCGCCAATAAACAATTTT
CTGGCCAAACAAATTGGTGTTCGTGTTATACGAGGTCCTGATTGGAAATG
GGGCAAACAAGATGGTGGTGAGGGCCATGTTGGAACTGTGCGGAGCTTTG
AAAGTCATGAAGAAGTAGTTGTTGTGTGGGATAATGGAACTGCAGCAAAT
TATAGATGCTCTGGTGCTTATGATCTGCGTATCTTTGATTCAGGACCGGC
TGGCATAAAGCATGACGGGACACAGTGTTGTGAATGTCAATCGAATCCAA
TCTACGGAACTTTATGGAAGTGTGTGGAGTGCAGTGAAGAGATGTGCAGT
ACTTGTTATCACAATGATCGGCATAACTTGAGACATCGATTTCATCAACT
TGTTGCTCCTGGTTCAAATAAGGTATTGGTTGAACCACGAAGAAAGAGCA
AGAAGATCACAGCTCGTGGAATGTTTCCTGGTTCAAGAGTCATTCGTGGT
GTTGATTGGCATTGGGAATCTCAAGATGGTGTTGCAGGAAGGCGAGGAAA
GATCACAGAAATTCAAGATTGGAGTTTGTTGCTTCCACGTTCTGCAGCTT
ACGTTGTGTGGGACACTGGTGCAAAAAATCTTTATCGTTTAGGCTCTGAA
GGAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012214XLOC_012214Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021770-exon-sc0000394-1491911889:285881..286211TCONS_00021770-exon-sc0000394-1491911889:285881..286211Clytia hemisphaericaexon
TCONS_00021770-exon-sc0000394-1510915933:285881..286211TCONS_00021770-exon-sc0000394-1510915933:285881..286211Clytia hemisphaericaexon
TCONS_00021770-exon-sc0000394-1575043694:285881..286211TCONS_00021770-exon-sc0000394-1575043694:285881..286211Clytia hemisphaericaexon
TCONS_00021770-exon-sc0000394-1491911889:286382..286550TCONS_00021770-exon-sc0000394-1491911889:286382..286550Clytia hemisphaericaexon
TCONS_00021770-exon-sc0000394-1510915933:286382..286550TCONS_00021770-exon-sc0000394-1510915933:286382..286550Clytia hemisphaericaexon
TCONS_00021770-exon-sc0000394-1575043694:286382..286550TCONS_00021770-exon-sc0000394-1575043694:286382..286550Clytia hemisphaericaexon
TCONS_00021770-exon-sc0000394-1491911889:286754..286860TCONS_00021770-exon-sc0000394-1491911889:286754..286860Clytia hemisphaericaexon
TCONS_00021770-exon-sc0000394-1510915933:286754..286860TCONS_00021770-exon-sc0000394-1510915933:286754..286860Clytia hemisphaericaexon
TCONS_00021770-exon-sc0000394-1575043694:286754..286860TCONS_00021770-exon-sc0000394-1575043694:286754..286860Clytia hemisphaericaexon
TCONS_00021770-exon-sc0000394-1491911889:287030..287158TCONS_00021770-exon-sc0000394-1491911889:287030..287158Clytia hemisphaericaexon
TCONS_00021770-exon-sc0000394-1510915933:287030..287158TCONS_00021770-exon-sc0000394-1510915933:287030..287158Clytia hemisphaericaexon
TCONS_00021770-exon-sc0000394-1575043694:287030..287158TCONS_00021770-exon-sc0000394-1575043694:287030..287158Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021770-proteinTCONS_00021770-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000394supercontigsc0000394:285881..287158 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.11893	6.15418	3.52875	3.92854	5.99592	3.29415	4.59224	6.4821	4.98916	10.366	8.77436	7.84638	6.57144	8.29818	4.62866	9.252	6.68594	7.07197	6.25944	5.30348	4.57995	6.82115	7.26752	3.05162	6.77221	5.15439	5.62553	6.9132	7.96577	5.87494
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010606Mib_Herc2
IPR000433Znf_ZZ
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0004842ubiquitin-protein transferase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0016567protein ubiquitination
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004842 ubiquitin-protein transferase activity
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00021770 vs. Swiss-Prot (Human)
Match: MIB1 (E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens GN=MIB1 PE=1 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 4.993e-103
Identity = 147/206 (71.36%), Postives = 169/206 (82.04%), Query Frame = 1 
Query:  121 NNFLAKQIGVRVIRGPDWKWGKQDGGEGHVGTVRSFESHEEVVVVWDNGTAANYRCSGAYDLRIFDSGPAGIKHDGTQCCECQSNPIYGTLWKCVECSE-EMCSTCYHNDRHNLRHRFHQLVAPGSNKVLVEPRRKSKKITARGMFPGSRVIRGVDWHWESQDGVAGRRGKITEIQDWSLLLPRSAAYVVWDTGAKNLYRLGSEGM 735
            N  + + +G RV+RGPDWKWGKQDGGEGHVGTVRSFES EEVVVVWDNGTAANYRCSGAYDLRI DS P GIKHDGT C  C+  PI G  WKC EC+  ++C+ CYH D+H+LRHRF+++  PGS +VL+E RRKSKKITARG+F G+RV+RGVDW WE QDG  GRRGK+TEIQDWS   P SAAYV+WD GAKNLYR+G EGM
Sbjct:    7 NRVMVEGVGARVVRGPDWKWGKQDGGEGHVGTVRSFESPEEVVVVWDNGTAANYRCSGAYDLRILDSAPTGIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTVCYHGDKHHLRHRFYRITTPGSERVLLESRRKSKKITARGIFAGARVVRGVDWQWEDQDGGNGRRGKVTEIQDWSASSPHSAAYVLWDNGAKNLYRVGFEGM 212
The following BLAST results are available for this feature:
BLAST of TCONS_00021770 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MIB14.993e-10371.36E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens G... [more]
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