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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021783 ID=TCONS_00021783|Name=TCONS_00021783|organism=Clytia hemisphaerica|type=transcript|length=5380bpRun BLAST on NCBI transcript from alignment at sc0000394:263730..272987- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021783 ID=TCONS_00021783|Name=TCONS_00021783|organism=Clytia hemisphaerica|type=transcript|length=9258bp|location=Sequence derived from alignment at sc0000394:263730..272987- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00021783 vs. Swiss-Prot (Human)
Match: PXDN (Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 SV=2) HSP 1 Score: 1199.5 bits (3102), Expect = 0.000e+0 Identity = 649/1464 (44.33%), Postives = 891/1464 (60.86%), Query Frame = 3
Query: 780 LFCLLLF----IIGALAQQ--NTCPRGCTCIPGTVRCINVRLERVPKGIPENTYVLDLRYNKIKELKREDXXXXXXXXXXXXXXXXISSIESDTFADLKKLRHLYLFSNRLRLIDGKTFTGLSSLEQLYLQNNAISKVGRKSFGHLSSLQRLYLHRNRINSIXXXXXXXXXXXXXXXXSSNRIQCTCAYL---RLIKELTFEHDVSVGATCRFQENRQ--QTSTLKFSDLGCYKPRYLQKPERTIGVEGRTVDIDCQAEGNPTPVITWFKDGASIPSNVK---HTVHNGTLTIENFSQDAVGFYQCNIENVIGK-SSSGAPIVLVSANVVPSLTEKPSNIDAVVQSIALFSCRASGSPRPSLTWLRQGQVISPTR-RFKLSHTGDLEIREIRLSDAGLYTCRASNGLGSVSNTARLTVRAPPRFTLTPFNQAGLAGTNIGLSCRATGYPTPVVTWQKNGARLPSDGRHVILPSGQLRISRARKEDEGQYECSAFNVIGVVSTTANLTIKAIVPPKIVSQPSDTTVQSGNTIAFRCRATGDPKPIISWKRNDVQITDGRRFRINPNDGSIEIKDIGKIDEGRWECNARNSLGDEKATFSLNV-IGSKNRVFKGDKFVLESLEKARSEVDRAIQQTKEKLASFKPKSPADLLALFRFP-SPDALEIARSAEIFEVAIDLIQKNVDTGLMLKEMNQKYKFNELVSPEHIRLLANLSGCTAHKRLVNCSDLCFHHKYRTYDGQCNNFNHPMWGSALTPFTRLLIPNYENGFNTPFG------WSKVKLPSARKVSSALISSVKVTADEEYTHMLMQWGQFLDHDMDFTVTSPSSLRFNDGKSCKESCENEQPCFPIEIPKDDPRIKK-YKCMEFTRSSAVCGSGSTSVFFDSITPRQQINQITSFIDASNVYGSSEKDARDLRATDTRTERGLLKRGIHHKNSQYFLPFNQDTKIECQINPLESQRTPCFLAGDHRANEQLGLLSMHTIWMRQHNHLARQLQRINPHWNGEKIYQETRKIVGAQMQHITFNEWLPKILGTEGMEKLGKYEGYNQNVEPTIFNSFATGAFRFGHTLIQPIMARLNSSFQETPEGSLPLHKAFFSPYRLVEEGGTDPLIRGLFGTPVKSRGATHQPFNTELTERLFEMAHTVALDLAALNIQRGRDHGLPTYNKWRQFCNLPVASSFNELK-EIKNETLRQHLADIYGDINHVDLFVGGILEDPIPGSRLGPTFMCLISLQFKRLRDGDRFWYENPSQFTSDQLIQIKETTLSRVICDNSDDIRRVQLDAFRRVERTSDYTPCNAHRKLDLRFWKECCGNDQSCSARNNDQSSNTISNFIGQRGRRSRR-SVDIATTSQHNMTSQHDHVNRNG---NGETSKMEERSMKKRMRYLERNMKKVYKIISNMQNEMDLLXXXXXXXXXXXXTNPRIEPRRQCID-NGLVREHGEKWFDERNYKCRCKHSKVLC 5078
L L+LF + +AQ+ CP C C TVRC+++ LE VP P+ T +LDLR+N+I+E++ F+ L+NL L L NN I I S F DL+ L++LYL+ N ++ ID + F GL+SLEQLYL N I + SF HL L+RL+LH NRI + T L +++RLRL SN + C C L L+K + A C + Q +T+ +L C +PR +P+ G TV C+AEGNP P I W ++ + + + +GTL I+N + G YQC +NV G+ + + + P+ +P N + +V C A+G P P ++W R + P R ++ +G L I+ + D+G Y C A+N + SV TA + V+A P+FT+TP ++ + G + C A G P PV+ W K G++L D RH++L SG LRIS D+GQYEC A N+IG A+LT++ V P S PSDTTV+ G + C + G+P+P I+W ++ VQ+T+ +F I+P +G + I D+G D GR+EC ARN++G + L+V + +R GD FV S+ +A + VDRAI T+ L +P+SP DLLALFR+P P +E AR+ EIFE + LIQ++V GLM+ Y +N+LVSP+++ L+ANLSGCTAH+R+ NCSD+CFH KYRT+DG CNN HPMWG++LT F RLL YENGFNTP G ++ LP R VS+ LI + VT DE++THMLMQWGQFLDHD+D TV + S RF+DG+ C C N+ PCF + IP +D R + +CM F RSS VCGSG TS+ +S+ PR+QINQ+TS+IDASNVYGS+E +AR +R D + RGLL++GI ++ + LPF EC + ES PCFLAGDHRANEQLGL SMHT+W R+HN +A +L ++NPHW+G+ IY ETRKIVGA++QHIT+ WLPKILG GM LG+Y GY+ + IFN+FAT AFRFGHTL+ P++ RL+ +FQ + LPLHKAFFSP+R+V EGG DPL+RGLFG K R Q NTELTERLF MAHTVALDLAA+NIQRGRDHG+P Y+ +R +CNL A +F +LK EIKN +R+ L +YG ++DLF ++ED +PGSRLGPT MCL+S QFKRLRDGDR WYENP F+ QL QIK+T+L+R++CDN+D+I RVQ D FR E Y C+ ++DLR W++CC + C R N S RGRRS S ++ + V R G + TS RS + ++ K I++++ ++ L+ + + +C+D G + KW + C CK +V C
Sbjct: 13 LLALVLFCAWGTLAVVAQKPGAGCPSRCLCFRTTVRCMHLLLEAVPAVAPQ-TSILDLRFNRIREIQPGAFRRLRNLNTLLLNNNQIKRIPSGAFEDLENLKYLYLYKNEIQSIDRQAFKGLASLEQLYLHFNQIETLDPDSFQHLPKLERLFLHNNRITHLVPGTFNHLESMKRLRLDSNTLHCDCEILWLADLLKTYAESGNAQAAAICEYPRRIQGRSVATITPEELNCERPRITSEPQDADVTSGNTVYFTCRAEGNPKPEIIWLRNNNELSMKTDSRLNLLDDGTLMIQNTQETDQGIYQCMAKNVAGEVKTQEVTLRYFGSPARPTFVIQPQNTEVLVGESVTLECSATGHPPPRISWTRGDRTPLPVDPRVNITPSGGLYIQNVVQGDSGEYACSATNNIDSVHATAFIIVQALPQFTVTPQDRVVIEGQTVDFQCEAKGNPPPVIAWTKGGSQLSVDRRHLVLSSGTLRISGVALHDQGQYECQAVNIIGSQKVVAHLTVQPRVTPVFASIPSDTTVEVGANVQLPCSSQGEPEPAITWNKDGVQVTESGKFHISP-EGFLTINDVGPADAGRYECVARNTIGSASVSMVLSVNVPDVSR--NGDPFVATSIVEAIATVDRAINSTRTHLFDSRPRSPNDLLALFRYPRDPYTVEQARAGEIFERTLQLIQEHVQHGLMVDLNGTSYHYNDLVSPQYLNLIANLSGCTAHRRVNNCSDMCFHQKYRTHDGTCNNLQHPMWGASLTAFERLLKSVYENGFNTPRGINPHRLYNGHALPMPRLVSTTLIGTETVTPDEQFTHMLMQWGQFLDHDLDSTVVALSQARFSDGQHCSNVCSNDPPCFSVMIPPNDSRARSGARCMFFVRSSPVCGSGMTSLLMNSVYPREQINQLTSYIDASNVYGSTEHEARSIR--DLASHRGLLRQGIVQRSGKPLLPFATGPPTECMRDENESP-IPCFLAGDHRANEQLGLTSMHTLWFREHNRIATELLKLNPHWDGDTIYYETRKIVGAEIQHITYQHWLPKILGEVGMRTLGEYHGYDPGINAGIFNAFATAAFRFGHTLVNPLLYRLDENFQPIAQDHLPLHKAFFSPFRIVNEGGIDPLLRGLFGVAGKMR-VPSQLLNTELTERLFSMAHTVALDLAAINIQRGRDHGIPPYHDYRVYCNLSAAHTFEDLKNEIKNPEIREKLKRLYGSTLNIDLFPALVVEDLVPGSRLGPTLMCLLSTQFKRLRDGDRLWYENPGVFSPAQLTQIKQTSLARILCDNADNITRVQSDVFRVAEFPHGYGSCDEIPRVDLRVWQDCC---EDCRTRGQ---FNAFSYHF--RGRRSLEFSYQEDKPTKKTRPRKIPSVGRQGEHLSNSTSAFSTRSDASGTNDFREFVLEMQKTITDLRTQIKKLESRLSTT--------------ECVDAGGESHANNTKWKKDACTICECKDGQVTC 1446 The following BLAST results are available for this feature:
BLAST of TCONS_00021783 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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