TCONS_00021789 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021789
Unique NameTCONS_00021789
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021789 ID=TCONS_00021789|Name=TCONS_00021789|organism=Clytia hemisphaerica|type=transcript|length=488bp
ACGGACTTAACTTGCAACAGCTTTGTTTATTTACGTTTTCTCCACGTTGA
TTGCttcgttttctttcattttttcagggaATGTGCGAAATGGTAAACTA
CACGTTAATCAAGCAAAACAAACCCGATTGAATAATTTGTTtgcgaagat
gaagatgaaaaagtgaaaataattagGTCACTCCAATAAACCCCCACGCT
TGGGCGATTGACGTTCTTTTACGATGCGATTTCTAGAAAGTTCGAAATAA
GAAAGACAAGGCCTTGCTGGGTCGAAATCCGCAGCTCGTACAGTTTTTCG
TTCTTCCGTATTCTTCGATTGAAGTTGCTAGATTACGTTTCACAACGAAG
AGACGTTTCGATGCATAAATTGGATAATTACCAATGCTTACATGTTAAAT
CAATCAACCATTGTAACTGAAGGATCTCAGCTGAAGTTCTGCTTCCTAAT
GTCCCATACGAAAACTAATCATGTTAATAACAAGACTG
Run BLAST on NCBI

transcript from alignment at sc0000394:123455..123942

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021789 ID=TCONS_00021789|Name=TCONS_00021789|organism=Clytia hemisphaerica|type=transcript|length=488bp|location=Sequence derived from alignment at sc0000394:123455..123942 (Clytia hemisphaerica)
CAGTCTTGTTATTAACATGATTAGTTTTCGTATGGGACATTAGGAAGCAG
AACTTCAGCTGAGATCCTTCAGTTACAATGGTTGATTGATTTAACATGTA
AGCATTGGTAATTATCCAATTTATGCATCGAAACGTCTCTTCGTTGTGAA
ACGTAATCTAGCAACTTCAATCGAAGAATACGGAAGAACGAAAAACTGTA
CGAGCTGCGGATTTCGACCCAGCAAGGCCTTGTCTTTCTTATTTCGAACT
TTCTAGAAATCGCATCGTAAAAGAACGTCAATCGCCCAAGCGTGGGGGTT
TATTGGAGTGACctaattattttcactttttcatcttcatcttcgcaAAC
AAATTATTCAATCGGGTTTGTTTTGCTTGATTAACGTGTAGTTTACCATT
TCGCACATtccctgaaaaaatgaaagaaaacgaaGCAATCAACGTGGAGA
AAACGTAAATAAACAAAGCTGTTGCAAGTTAAGTCCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012228XLOC_012228Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021789-exon-sc0000394-1491911889:123455..123942TCONS_00021789-exon-sc0000394-1491911889:123455..123942Clytia hemisphaericaexon
TCONS_00021789-exon-sc0000394-1510915933:123455..123942TCONS_00021789-exon-sc0000394-1510915933:123455..123942Clytia hemisphaericaexon
TCONS_00021789-exon-sc0000394-1575043694:123455..123942TCONS_00021789-exon-sc0000394-1575043694:123455..123942Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000394supercontigsc0000394:123455..123942 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.487453	1.11436	0.688701	1.00199	2.26429	0.921329	0.881735	1.34038	1.10134	0.347335	0.812226	0.433524	1.37453	0.721872	1.00993	1.40444	2.02373	0.619011	0.560711	1.17981	0.530207	0	0	0.903958	0.507279	1.24898	1.28786	0.280225	0.557418	0.702416
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021789 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top