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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021790 ID=TCONS_00021790|Name=TCONS_00021790|organism=Clytia hemisphaerica|type=transcript|length=1101bp
CTCAATGATCATTCGCATACAGGAGATAGTGTGTGCTATTTCTGTCCATC
AAAAAGCCTTTCTTTCTCACCTGGAATGTGCGGGATAGACATGTCACAAA
GACTTTATACCAATATGTCATATATATGACACACACTTGTAACTTCTCAG
ACTGAGGCAGTAATAGAGAAATCTGCGATGTAATTGCAGTGCCTTATGCA
TTATGCAGGCTTTTACACAAATGCTGTTTGCTAATGTTACTGATTTATGA
CATGACAGGGTTGACAACAATCTCAGTTGGTGCTGTGAGAGAGCCCAGTT
GTTTTATGCAACGTAACTTACGAAACTCACAATAAGGTTAATCCACTAAG
TACAAGCAAAATATGCCTCTTACCCAAATTTTGCAATGATACATTTTAAA
AAGAACATCTGTAATTTCAAACCTGAATATGTCATTTATGTATGCAACCT
CTTTTTCGAAGATTGCGGCATTGTTCAAGGAGTAGGCAGAAAAAAACGGA
tatgtttttacatttttcagagAGGAATACATTAACACAAAGCAAAGAGT
TAGAAATAATGCATCCATTTAGCACgaagtttttgcggtttttcctGGTA
CAATGCTACTTACATAGAAGAGTGAAGTGGTCGCAAGAGGGAGTTTTTCT
CACGGGAAAATTACTGGTCCTATTATTAGCAAAGCGAAGAGAGGCCACTT
TTGAGATCTTAACTGTATTCTCCTTGCTTTGTTGTGTTAAATTGCATCGG
AATTTGTAGAGAATTTTTCtcaacaattttttatcaacgTTTTACCGTTT
CAAACTGTCGACAGAAAAGCAGGTCCTTTTGAAATTCCTGTTTCCACGGC
TGAGAAATTTTCtcctactttaatgggataaactttcgcggggtgTCATC
cacgaaaatccgcgaaattaaatcccaatggaaatttgtaAGGAccccat
ccgcgaaatatttctaatcaaaactcaaaatatgtcaaataaatacctTT
TGAATGATTACTTGCATCAAaaagcgcaaataatgtgtatttttcaacaa
ccaatatacatgatttgacagtataaagatacaaaattgtgaaagtattg
c Run BLAST on NCBI transcript from alignment at sc0000394:176425..177525 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021790 ID=TCONS_00021790|Name=TCONS_00021790|organism=Clytia hemisphaerica|type=transcript|length=1101bp|location=Sequence derived from alignment at sc0000394:176425..177525 (Clytia hemisphaerica)
gcaatactttcacaattttgtatctttatactgtcaaatcatgtatattg
gttgttgaaaaatacacattatttgcgctttTTGATGCAAGTAATCATTC
AAAaggtatttatttgacatattttgagttttgattagaaatatttcgcg
gatggggTCCTtacaaatttccattgggatttaatttcgcggattttcgt
gGATGAcaccccgcgaaagtttatcccattaaagtaggaGAAAATTTCTC
AGCCGTGGAAACAGGAATTTCAAAAGGACCTGCTTTTCTGTCGACAGTTT
GAAACGGTAAAAcgttgataaaaaattgttgaGAAAAATTCTCTACAAAT
TCCGATGCAATTTAACACAACAAAGCAAGGAGAATACAGTTAAGATCTCA
AAAGTGGCCTCTCTTCGCTTTGCTAATAATAGGACCAGTAATTTTCCCGT
GAGAAAAACTCCCTCTTGCGACCACTTCACTCTTCTATGTAAGTAGCATT
GTACCaggaaaaaccgcaaaaacttcGTGCTAAATGGATGCATTATTTCT
AACTCTTTGCTTTGTGTTAATGTATTCCTctctgaaaaatgtaaaaacat
aTCCGTTTTTTTCTGCCTACTCCTTGAACAATGCCGCAATCTTCGAAAAA
GAGGTTGCATACATAAATGACATATTCAGGTTTGAAATTACAGATGTTCT
TTTTAAAATGTATCATTGCAAAATTTGGGTAAGAGGCATATTTTGCTTGT
ACTTAGTGGATTAACCTTATTGTGAGTTTCGTAAGTTACGTTGCATAAAA
CAACTGGGCTCTCTCACAGCACCAACTGAGATTGTTGTCAACCCTGTCAT
GTCATAAATCAGTAACATTAGCAAACAGCATTTGTGTAAAAGCCTGCATA
ATGCATAAGGCACTGCAATTACATCGCAGATTTCTCTATTACTGCCTCAG
TCTGAGAAGTTACAAGTGTGTGTCATATATATGACATATTGGTATAAAGT
CTTTGTGACATGTCTATCCCGCACATTCCAGGTGAGAAAGAAAGGCTTTT
TGATGGACAGAAATAGCACACACTATCTCCTGTATGCGAATGATCATTGA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021790-exon-sc0000394-1491911889:176425..177525 | TCONS_00021790-exon-sc0000394-1491911889:176425..177525 | Clytia hemisphaerica | exon |
| TCONS_00021790-exon-sc0000394-1510915933:176425..177525 | TCONS_00021790-exon-sc0000394-1510915933:176425..177525 | Clytia hemisphaerica | exon |
| TCONS_00021790-exon-sc0000394-1575043694:176425..177525 | TCONS_00021790-exon-sc0000394-1575043694:176425..177525 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000394 | supercontig | sc0000394:176425..177525 . |
Blast
The following BLAST results are available for this feature:
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