TCONS_00021794 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021794
Unique NameTCONS_00021794
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length213

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021794 ID=TCONS_00021794|Name=TCONS_00021794|organism=Clytia hemisphaerica|type=transcript|length=213bp
atctcagcaaaaaagaacaataagCCGATATCTGGTCTGATACGAAATAT
GTGCTCAACATGAAACGGGAATACTTATGTTAGTATATAACCTATAGTAC
ataacctttaaaaaaaatataacgGTTTTTTGTGTATATGGTTTTTCCAa
tgtaaaataaagtttggtttttccttagcctgtaccaaaccctACTTCTT
TATGTAGCTGACG
Run BLAST on NCBI

transcript from alignment at sc0000394:232928..233140

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021794 ID=TCONS_00021794|Name=TCONS_00021794|organism=Clytia hemisphaerica|type=transcript|length=213bp|location=Sequence derived from alignment at sc0000394:232928..233140 (Clytia hemisphaerica)
CGTCAGCTACATAAAGAAGTagggtttggtacaggctaaggaaaaaccaa
actttattttacatTGGAAAAACCATATACACAAAAAACcgttatatttt
ttttaaaggttatGTACTATAGGTTATATACTAACATAAGTATTCCCGTT
TCATGTTGAGCACATATTTCGTATCAGACCAGATATCGGcttattgttct
tttttgctgagat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012233XLOC_012233Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021794-exon-sc0000394-1491911889:232928..233140TCONS_00021794-exon-sc0000394-1491911889:232928..233140Clytia hemisphaericaexon
TCONS_00021794-exon-sc0000394-1510915933:232928..233140TCONS_00021794-exon-sc0000394-1510915933:232928..233140Clytia hemisphaericaexon
TCONS_00021794-exon-sc0000394-1575043694:232928..233140TCONS_00021794-exon-sc0000394-1575043694:232928..233140Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000394supercontigsc0000394:232928..233140 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.72051	0.60535	1.18964	0	11.4609	0	1.06347	0	2.32163	8.18557	0.399427	3.50698	1.29875	0.987788	3.07443	0	3.85554	4.73398	2.83552	4.08457	16.955	9.21758	3.15889	7.74162	0	0.293676	15.693	16.2598	8.51492	4.12136
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021794 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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