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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021796 ID=TCONS_00021796|Name=TCONS_00021796|organism=Clytia hemisphaerica|type=transcript|length=2836bp
CTTTCATAAGACACCCTCAACGCAAGCAACTTTCTCATGATGAATAATCG
CCAACTTGGTTCACACCGCATAAAAACAACGCGATGTCCGTCCAAGTTGC
AGCAGCCGAAAAATCTGATCAATCGACTGAATGTTGGATTTTGGTTTTCG
TGAGATTAAATTAAGTTTCTCCTTTTTTCAAGTTTGATTATTCATTTGAT
TTTAGGTCAAAAGCCTTGTGATCATTAAAGAAAAGCAGAATGGATTTCGA
AGGAGCTAGCAATAACATGAAAGCATTTTTAACCCATTACTACTCAATGT
TTGAGGCAAATAGAGAAGCTTTAGCCGGATTTTTTgaTGGCAATTCAATC
TTCACATTTGAATCAGATGTACTACTTGGACAACAAAATATAATTAAACA
TTTAATAGGCTTACCTTTCAAAACAGTTAAATTCATACCGTCTACAGTTG
ATACTCACCCAACAATTTACAATGGATATTTCACTACAGTAGTTGGACAG
CTAAAGactgaTGATGATCCACCTCACGGCTTTGCGCAATCATTTCATGT
TAAAGTTGACGGACAAAATCCAATAATATTAAACAGTGTATTTAGGCTAA
ATATTCACAATGGATAAACCAAATGATGAGGGACTTGGTGTATTGCTTGT
TTTACTGGATGGATCAATAAAATCAACTCCCCAGTAATTGGTGGACTGGA
CTGTTACTGTTTCCTAGCTCAATAAGATCtaactaaaaaatatttttcat
attattgTTTATAGTAGtcttttatctttctttttttttacttatttcta
AACTCTTtctttgttgattctttaaactAGATTTATGAATACATTGCCAC
TGTTTTGTTGTTGGATAGTAGCACTGATATTGAAAATCTTCTAGACTAGA
TTAACAAGATATCATTTAGAATAACATAGTATTTTATACaaccaaaaaaa
tattattttaaaaacgATTTTGCTTTGGTTTCAGAGACCACCAAGCAACa
ataatttaatattttgaGAAGCTTTAAATTGATTATGTCTTTGTGTGGTC
CACGAGAAGAGGAAATCTTTTATCAATGCTAGAAGctagaaaattaaaaa
gaatatattgCTCTTTTTCTACAATTTTCTGAATATTCATTACTTATTCA
ATTGCAATATTTCATACATAGACCACCCATGAGAATTACAACTTATAAAC
TATAATATAGGTCATTGTAAATTACTCGTCTGGCGAGCTTTGAACTAATG
ATGTCTGAAGATTCTATTTATTATGGATTCATAAATTCTGCACTGGTTTG
CTCAATTCTCAGTGCTGAACCTATCATTTGTTATTAGTTATACTCAGTta
gttgatttttttgaatttgtttttctttcatttagaTAATTGCTAAAATA
CTGTAATAAACATACAAAACAATATGGGATGTTTATCCTCCAAAGAAAGT
GTTGAAGAGCCACCAAAACAGCCTGTCTTCAGCTGGGATCGAGATGATAG
ACCTGATCNATGGGATGTTTATCCTCAACAGAAAGTGTTGAAGAGCCACC
AAAACAGCCTGTCTTCAGCTGGGATCGAGATGATAGACCTGATCCTAAAG
ATTACACAATATCTGAACAAGATGGTACTGTTTGTGGTAGGAAACCTGGC
ACCATCAATGGCCAACAGTTTATCATAGAGAATTGCAAGAATAGCTCTAT
TTACATTTACGATCATAGTGCTATGGTAACCATTGATCGTTGTGAGAATT
GCACCATATTCATTGCGCCCATCAAAGGAAGTGTTTTTATTCGGAATTGT
AAAAATTTGAGATGTGCTATCGCTTGTCAACAATTCCGATCACGTGACTG
TCAAAAGATTGAAACATTCTTGTATTGTCAAACACAACCGATCATCGAGT
CATCTACCGGCATGAAATTTGCTTGCTTTCAGTATTACTATCCTGAACTA
GAAGAGCAATTTAAATTGGCTGGCCTCTCAGTATACAATAATACGTGGAG
CACTATTCATGATTTCACTCCTGTTGAACAGTCCGAGAATTGGTCGTTGA
TCCCTCAAAGCGTCACCCTAGAGCAACATGTACCTCGCCCTACTAGTGAA
GAATTCGCCGACATTGATGTCAAATTTGAGTCTGAATTGAGTGTTGTGCC
TTTGACACAACAAAAACGAGCAGTGAAGTCTGACCAAAATTGTTTGATTG
TGTTCTTTGATAATAATAAATCTAAGTGCAAGGAGTTTTTAAAGGAGTTG
GCAAAGATCACCGACTATTGTATTATCCAAACGAAAGAGATTAAAATGGA
GCCTGAAGATGTGGAACGAATCTTTAAGAAGGAAAGATTTCGTGAATTGT
CTACACAAGGTAGTGTGGTTGGTTTGGAATTAAGTGGAGAGTCAGTGATA
ATGAAATGTGAAGGAGTTCTTAAAGAAATGAACGTCTCTTTGAATGATAT
TTTCTTATCTAATAACGATGCTAGTGCTAAAAATGATGTAGCTGCTTTTT
ATAATTACATTGATATGATGATGAGCACTTAATTGATTTGTATAATTAAA
TTATAACTTTAAACTGTTTTTATTTCGcacttttttttggtttttattta
tGTACACTACCTTgcggtatttttaatttttttaactaaTAGTTAAAATG
ATTCGATATAGCTCTGTTACCCATTAAACAGAAGAAATAATACTTCTTTA
CAAGATTGTGATAAAGCGAGTTCCTCTATTTGGGAAGAATTAAACCCCGC
GAAAACAGagttttattattatatttcaaaGGAATTGGGCTCAATTTGTA
AAAGAAAAGTTCTCTCTAAGAGCTTTTGATTTGAca Run BLAST on NCBI protein sequence of TCONS_00021796-protein >TCONS_00021796-protein ID=TCONS_00021796-protein|Name=TCONS_00021796-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
MGCLSSTESVEEPPKQPVFSWDRDDRPDPKDYTISEQDGTVCGRKPGTIN
GQQFIIENCKNSSIYIYDHSAMVTIDRCENCTIFIAPIKGSVFIRNCKNL
RCAIACQQFRSRDCQKIETFLYCQTQPIIESSTGMKFACFQYYYPELEEQ
FKLAGLSVYNNTWSTIHDFTPVEQSENWSLIPQSVTLEQHVPRPTSEEFA
DIDVKFESELSVVPLTQQKRAVKSDQNCLIVFFDNNKSKCKEFLKELAKI
TDYCIIQTKEIKMEPEDVERIFKKERFRELSTQGSVVGLELSGESVIMKC
EGVLKEMNVSLNDIFLSNNDASAKNDVAAFYNYIDMMMST Run BLAST on NCBI transcript from alignment at sc0000395:18644..28838+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021796 ID=TCONS_00021796|Name=TCONS_00021796|organism=Clytia hemisphaerica|type=transcript|length=10195bp|location=Sequence derived from alignment at sc0000395:18644..28838+ (Clytia hemisphaerica)
CTTTCATAAGACACCCTCAACGCAAGCAACTTTCTCATGATGAATAATCG
CCAACTTGGTTCACACCGCATAAAAACAACGCGATGTCCGTCCAAGTTGC
AGCAGCCGAAAAATCTGATCAATCGACTGAATGTTGGATTTTGGTTTTCG
TGAGATTAAATTAAGTTTCTCCTTTTTTCAAGTTTGATTATTCATTTGAT
TTTAGGTCAAAAGCCTTGTGATCATTAAAGAAAAGCAGAATGGATTTCGA
AGGAGCTAGCAATAACATGAAAGCATTTTTAACCCATTACTACTCAATGT
TTGAGGCAAATAGAGAAGCTTTAGCCGGATTTTTTGTAAGTTAAagggga
taatcagatggtttgtaatatttgaGATGTGGGATCCTTCTATTGACCTG
AGTAAAGTCTCAAATTATTTTTGCCTAACTatttttccaaagtcgagata
tttaagttaaaagtttttggcttttaggataaaaacaaatagaattttga
tatctttaaaatactttaaggtcttactgtaagttggtctaatgtctaat
gtcaacattccttttctaattccgacaccctttttagagattgaaaaata
agaagattAGAAGCGCTGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNagccgccaaattaaattcccgccaaattaaacat
tttgaaaatatgatctcttttaaggtgtttttgctattttttcgctgttt
tgacgccatcttaaggttacatttttaagcgaccgccaaattaaatttcc
gccaaatttagttttttcgtccatccgccaaattaaattccctctgaaaa
aacttttttgaccatccgccaaattgaattcccTCAAACTGTTGCTGcta
aacggcaattttttcaaagataaaatGCCAAGTCAGCAAATTGGGTTGTC
CTTATTAGGGTAACAGTATaaggtgtttgaaaattgtataATAACATAGA
GGAAaaggtttttcagatttttaaaagtgatttttataatttttcgttgc
tcaaaATGGAAGGCTGTGGATTggtgttcatttgttttgaaattttgctg
ctttgattggtcagtcatttgatggctatgcaagtgccgtagtatagtgg
tagtcgaccttggcttctgtgcagacggccagggttcgattcccaatTAC
GGCAgctcacttggcaagtgaacgttccttcgcccgggtcaactcatgcc
atgtgaggggaattgggtagtcagttcaaggtgctgacaggacgctcatt
agtaagcttctatagttgcgagaataggcctctaaagcctcctgcaactc
aaccaaatagaaatagaaatagaagtttccctccactgatgcaagttacc
cgacttcacagtacaactttagagctagcctgtctTTTAACTATGACTAT
TTTAACTAAtgacaacttttcaaaaaacctcAAATAATGACAACATCGTG
TGGCAGGTTTTTGAACTTGCAGGCAGCTTACACGTAAACATAAcatttaa
tagacctttttgcctttccatccgccatattgaattgtatgcaaaaatta
tggtggccgaattgctgtggtgaaattcccttaaaaagtatgcaaaacat
atgcaaaaagaaagtattaatataaaacNaacaagcacttcaaaaaccat
aacattagacataaactcaagctgaaaaatcacctgcaaaggtacaaaaa
taatccttatttggctgacagtaaattattctcctgggaatagaaccgcc
aaacgatcaaatcaaaaaatttatctgctgaatgtgtgacgtcataatta
ctgctttcagtttgcgtgttttgacaGTTTGATGTGTAACTccgtcttgg
tggaattttttgatggcatgaaaacagaatatgcaatgtctttaagaaca
aatttctaaaaggcttttgttgttctgtaaatatttctttttggattaag
aaattccatcttttattgttctaatgattataatatttctttataagatg
ctttgttgtctttttaatctttgtgtatacttgcatattttccaactaaa
tcaaccacggctttttcgttcctccatttttgcatacaattcaagatggc
ggatagaaaggtgaaaaggtctattccattgGCCTAAcataaaaagctct
aaaatAATATGTGAAAAGATCCTGTATCAATGCCGAggcacagccagaaa
gagaatTTTGCTAGTCTGAATTCCAATAAAAAGCAGTTGAAAACTAAACT
AAACAACAAAGCACAGTGGACCTACTAGTTgggagggtgtcaaataccac
atgttcaataataaaaaatgacaatagcaattttcagttataaacttttt
tacttttctgctgattcagcatttcattgttgaaaaaattgttgTTGTCG
TTATCAACAATAATTGCttaaaagagcaataattgcagtttttatcttaa
atacCCAACTGGAAACTAAATGATAACATATTCACTCTTGAAAATAGGTA
CTTTTGAGTCTCAGTATTCCTTCTGAAAATTGTTTAAAGTAGATTGCGAG
CAAAGCGAGAATGAAAACCTTTTGGATTTTAACCCAGTCCAAGACTGCCA
AAATAGAGATTTAGAAAGATAGGCTCAATGAACTTTGCTAACACGTTTTA
AACCCCCTTTCTAGATGAACCTCaaccttttcgaaaatttccccCTTTCT
ACAAGAAATTCCCCCCACTTTCTGTGATTTTTAGGACATCCCTCCCCCTC
CATGGGGGTTTGCGAACTATGCTTAAGCTCAATATTATTGATAATCGCCA
GTTTAGAATGTGTACTTTTtgccctgtctattctaattgttgGGGTAGGC
AGAGAGTTTGTCCTCAAAATCTTCCCTTGAAACAGATTTTAAAAAGACAT
CATTCACATCATTCACTGTTAGAATAGGAAAGTCATAAAGTGGTTGTCTA
AACCAGAGCCTTGCAAGTAAATGTCTAACCCatctgtttttatttctttt
aggaTGGCAATTCAATCTTCACATTTGAATCAGATGTACTACTTGGACAA
CAAAATATAATTAAACATTTAATAGTATgtattgttttatttgtttgttt
tatgttgtcatgtttatgtttatgtttcttttcttttttgttgatgTATA
AtagtacaatgtgtacttagctcgaggctaatcaatatcaactttTGATT
ACAAATCTATCTAAAAGGTCGAAAAGGTTGATGCtcaaaatcaattatta
tttacaaattaatttaaattcaatcaatAAACCCAACGTCACAGATAAAG
GTGCAACAGTTTCGGCAAGGACAAGTAGTGGGTCCCCAttgcttgatttc
tttttcaaattcatctatgtttttaagttttttaaagtcatCTGGAAGGG
TAGCCCAGATTTTAGGTCCCAAGAAAGCTGTTTCACTTTCAACTATTCTA
CTACAAAAGGAATTTGTTGATTTTATCTTCTAGAGCCCTGCTATGAAACA
TCCATATGAGAGGACAGTAATCGAAGTGGCATTTAATGAAAGAACTCNTT
AAATTCAATCAATAAACCCAACGTCACAGATAAAGGTGCAACAGTTTCGG
CAAGGACAAGTAGTGGGTCCCCAttgcttgatttcttttttaaattcatc
tatgtttttaagttttttaaagtcatCTGGAAGGGTAGCCCAGATTTTAG
GTCCCAAGAAAGCTATTTCACTTTCAACTATTCTACTACAAAAGGAATtc
ctttttcttgttttgatcgTTTTGAACGTTCTGATTCATTGAGTTTTGAC
TTAAATAGCTCTGTGGATAAAGATTGAATTGCTCGTTGATGGAAAGTGGA
ACCATTGTCAAGTTTCAACAGATCTTCGAATGATGAGTTGTAgtctgagt
aaacgattctcaaGCATCTTTTATTATGTAGATTGTTGATTTTATCTTCT
AGAGCCCTGCTATGAAACATCCATATGAGAGGACAGTAATCAAAGTGGCA
TTTAATGAAAGAACTCATTaagtgtttcttttttttctaaactgaCATAT
GTGCTCATTCTggctactcttgtctcccgaatagacggggggtgTCCGAA
TAATTTTTAACTGATATGAATTTCaacatcaaaaaaaaactttaacaaat
gaacacgtaaaataagagccaatactaacaaaaaggaaaatttgacaagt
ttaaggtctatctacactaataatatattgaattattcaaatttaattag
cggggggatggattttttttttcttaacaattagcgggggacgtctattc
gggagacaagagtaaggcGGTTATTTTCAAACGAGCTTTCTTGCAAAGAT
NagggggggggggggggtccgaataattTTTAACTGATATGAATTTCaac
atcaaaaaaaaactttaacaaatgaacacgtaaattagagccaatactaa
caaaaaggaaaatttgacaagtttaaggtctatctacactgtaataatat
attgaattattcaaatttaattagcggggggatggatttttttttctctt
aacaattagcgggggacgtctattcgggagacaagagtaaggcGGTTATT
TTCAAACGAGCTTTCTTGCAAAGATTTTCTATATGCGATTCAAACGTCAA
GAGATTATCAAAGGTTTCTCCAAGAATCTTTGACGTTTTTTATCGTCGTT
GACAGTTTCCTCTCTAATATTTAGATAGAGCGAATCGTCAATGATGCTAA
CTATTAGCTGACATTTGTCAGCATTGCCAACCATTTGCATAATTCGCGAT
CTTAGTGTCTTTAATGTTGAAAAAGAGGTCGGagatataaatattgaaaa
cCAGAGGGCCAAGGATGGATCCCTGGGGCTGGGGAACACCATCCTTGATC
TTGATCCAGTTACTCAGTTCGTTGCCTATTTTCTATATAACTCTTGACTA
ACCTAGTGGAAAGGTCACGGAATCCGTATGCATTGATCTTTGCTACAAGT
AATTTGTGTCAGACACATGCAATCAAAGGCCTTAGAAAAGTTGATGAGCA
GTGTCCCAAAAACATCTTTCTTGTCATTGGCTAGCTTCCAGAGCTCTTCC
ATTGGGAGAAGCGATGTTTGAGTGGAATATCCTTTCCTAAAACCACATTG
TTGTTCATCAAAGTAGTGTTCAAAGTATTCTGATaagctttaaatttttt
ttcatgggGCAAATGATAGATAGTGGAAAATATCATTCTTTGCCACagaa
agtcatgtgacatctttttcaaccaataagatttaataatctcaagggta
aaacaaacactatggtttaactcgctaaaagattatgtttattcaaaaca
cataattaatctttagtaagtgttctgttgtaccccagttctgacgtcat
gccgtggcGAAGAATTGTTACAAATTTGTATACCAATACAGAATAACTag
gaaaaaataaggaatttaataTACATAAAATCTTATAGAGACCTCTGTAT
ATCAGGTATCCAATTCAATGCGGTaagatacgtgcaagctgtTATATACC
TTTTTTCAAATGATGCGATTAACGTGTAAAAGAGAtcaacgcaaaggttg
atgggatagGAACTCGTACAagcacatcgagagtaatgattatgtcaaaa
ataaaatctatttttagattccaGCGTGGTGCGTTATTGGGACTTTgtga
ttttttataaacaatttaatttttagtatttttggcTTTTACCCAGTTTT
ACCTTGAAAGATTTGGTGGTTCCTTCAAAATGATACATCAAGATATTTTT
TGTTACAATTATTTTCGTTATGTTTTAGGGCTTACCTTTCAAAACAGTTA
AATTCATACCGTCTACAGTTGATACTCACCCAACAATTTACAATGGATAT
TTCACTACAGTAGTTGGACAGCTAAAGGTAAATCAGTAACGAGTTcttca
taatttttatttttgagggTAACAGTTActcaaaatataaaacaatCTTC
CATTAAGCCAaccgtattacttcaaataaactcccccttcttttaaactc
CCTGTCGAGTGTCATGGTGCGCCAGGCCAGTTGAGGCTGGGCCCACGACA
ACAATATTTATACTTAAAGTTTTCTCCCGGATATCGACCAGACTGCCGTG
AGAAGATAGGAGTTGGAGTTCATGGAGTAGATTGAGGGAGCAGACACAAA
GGTTAAGTTAATTTCTATCAATACCTCATGAAATATCCAAACATAAAGTG
GCATAAACATAAATCCAATAAAGTTCAACATGTTGAGAGGTCGGGAACGC
ACTATTGACTGGCCAGCGTCAATTTCAAACAAACTCTTTACTCTCTCCTC
CTGGTACCTGGATCTCTTCTCATGTCGATTAACACGGTACTCCCGACGGG
AGGGCTTGCCTTATCCAAGGCTTAAGGTGAAGTGTTTTCTCTCCTAATAA
ATTCCCTATCTAACGTACTCAATGTGAGCTTCCATTCAATGGTTACCATG
ACAACTAATGTAAATATAAAAATGGTGGACCCTGCCCTCATGAcagcccc
ctcgaataaacgctcctcctttagagaaaaaatttaaataaacaCCCCCT
CAAATAAATGCTCCTTCGAATAAACACCACCCTCCTAGAAGGGCGTAGCA
GTAAAGAAGTGTATAATATAGAAAAACTGAGATATACAACAATAATTGTA
TTCCAACTGGTTTTGACCAATTTCACATCTCTAAATTGACTCGAAAAATA
GAATTAAGGTAAAATAAAGCTTTAAACGCCCCCTCTAATAAAGGCCTATc
ataaaattcaaagaatttattCAAAGCAATACAGTATTCGGCTAAGGCCA
AATTAGTTTCTTGCTCTTTCAATCAAGCTGCTAAAGAAACACTTGGAAAT
attctgaaattgaaaaaatctggTCAGTCCTTGCAAATAAGCAATATTGG
GCTGTTCTGTTAAAATGTCTTTCTAGGGGAAGGGGTGGacgatttttttc
gaaattcaaaaatctgcAATTTTAGAAATCTTTCAGACTCCAAATAAGGT
ATTTTGTGCTGTAAATTTGATGACCTATCCTTTGAGATGCTTATGTTGTA
GCCATGATTTTAGatgctttgaaattttagaCTTCAAAAGTGTATTCCtc
agaaaataatttgaaaaaaaaatttaaactcaTCCTGGTTTCATGTAACC
CATTTCTCAAAACTACAGAAAAGGTGAATTAGCAgataaaatgcttaaaa
tattGTGCTCAGAAAGAGACATTAAAAAGCTTCAATACTGTTTTTTCAAT
ACAACATGAATATtaattcaaaatgttaaaagtaaCTGACTGAAAACGAA
ATCAAGTTTCCGTGTATGTTAATTAAAGAGATAATGTCTTTTTACTCTGG
TGCACTATTCccaaatagattttttttaagtAGGAAGTTCAGTAGGTACT
ACTTTCAGAAAACTGTCACTCCTAGGGCCAACCATGGACAAAGGCTCCAA
AACAAGtttgaaaagcaaaaaaataaatatgcagaAGTTTTGGGCTTGGA
AATTTTGTGCAGGACCTCAAACAGACTAAAAAGAAAGCTTTTGTTGTaac
cttttaatttttcagactgaTGATGATCCACCTCACGGCTTTGCGCAATC
ATTTCATGTTAAAGTTGACGGACAAAATCCAATAATATTAAACAGTGTAT
TTAGGCTAAATATTCACAATGGATAAACCAAATGATGAGGGACTTGGTGT
ATTGCTTGTTTTACTGGATGGATCAATAAAATCAACTCCCCAGTAATTGG
TGGACTGGACTGTTACTGTTTCCTAGCTCAATAAGATCtaactaaaaaat
atttttcatattattgTTTATAGTAGtcttttatctttctttttttttac
ttatttctaAACTCTTtctttgttgattctttaaactAGATTTATGAATA
CATTGCCACTGTTTTGTTGTTGGATAGTAGCACTGATATTGAAAATCTTC
TAGACTAGATTAACAAGATATCATTTAGAATAACATAGTATTTTATACaa
ccaaaaaaatattattttaaaaacgATTTTGCTTTGGTTTCAGAGACCAC
CAAGCAACaataatttaatattttgaGAAGCTTTAAATTGATTATGTCTT
TGTGTGGTCCACGAGAAGAGGAAATCTTTTATCAATGCTAGAAGctagaa
aattaaaaagaatatattgCTCTTTTTCTACAATTTTCTGAATATTCATT
ACTTATTCAATTGCAATATTTCATACATAGACCACCCATGAGAATTACAA
CTTATAAACTATAATATAGGTCATTGTAAATTACTCGTCTGGCGAGCTTT
GAACTAATGATGTCTGAAGATTCTATTTATTATGGATTCATAAATTCTGC
ACTGGTTTGCTCAATTCTCAGTGCTGAACCTATCATTTGTTATTAGTTAT
ACTCAGTtagttgatttttttgaatttgtttttctttcatttagaTAATT
GCTAAAATACTGTAATAAACATACAAAACAATATGGGATGTTTATCCTCC
AAAGAAAGTGTTGAAGAGCCACCAAAACAGCCTGTCTTCAGCTGGGATCG
AGATGATAGACCTGATCNATGGGATGTTTATCCTCAACAGAAAGTGTTGA
AGAGCCACCAAAACAGCCTGTCTTCAGCTGGGATCGAGATGATAGACCTG
ATCCTAAAGATTACACAATATCTGAACAAGATGGTACTGTTTGTGGTAGG
AAACCTGGCACCATCAATGGCCAACAGTTTATCATAGAGAATTGCAAGAA
TAGCTCTATTTACATTTACGATCATAGTGCTATGGTAACCATTGATCGTT
GTGAGAATTGCACCATATTCATTGCGCCCATCAAAGGAAGTGTTTTTATT
CGGAATTGTAAAAATTTGAGATGTGCTATCGCTTGTCAACAATTCCGATC
ACGTGACTGTCAAAAGATTGAAACATTCTTGTATTGTCAAACACAACCGA
TCATCGAGTCATCTACCGGCATGAAATTTGCTTGCTTTCAGTATTACTAT
CCTGAACTAGAAGAGCAATTTAAATTGGCTGGCCTCTCAGTATACAATAA
TACGTGGAGCACTATTCATGATTTCACTCCTGTTGAACAGTCCGAGAATT
GGTCGTTGATCCCTCAAAGCGTCACCCTAGAGCAACATGTACCTCGCCCT
ACTAGTGAAGAATTCGCCGACATTGATGTCAAATTTGAGTCTGAATTGAG
TGTTGTGCCTTTGACACAACAAAAACGAGCAGTGAAGTCTGACCAAAATT
GTTTGATTGTGTTCTTTGATAATAATAAATCTAAGTGCAAGGAGTTTTTA
AAGGAGTTGGCAAAGATCACCGACTATTGTATTATCCAAACGAAAGAGAT
TAAAATGGAGCCTGAAGATGTGGAACGAATCTTTAAGAAGGAAAGATTTC
GTGAATTGTCTACACAAGGTAGTGTGGTTGGTTTGGAATTAAGTGGAGAG
TCAGTGATAATGAAATGTGAAGGAGTTCTTAAAGAAATGAACGTCTCTTT
GAATGATATTTTCTTATCTAATAACGATGCTAGTGCTAAAAATGATGTAG
CTGCTTTTTATAATTACATTGATATGATGATGAGCACTTAATTGATTTGT
ATAATTAAATTATAACTTTAAACTGTTTTTATTTCGcacttttttttggt
ttttatttatGTACACTACCTTgcggtatttttaatttttttaactaaTA
GTTAAAATGATTCGATATAGCTCTGTTACCCATTAAACAGAAGAAATAAT
ACTTCTTTACAAGATTGTGATAAAGCGAGTTCCTCTATTTGGGAAGAATT
AAACCCCGCGAAAACAGagttttattattatatttcaaaGGAATTGGGCT
CAATTTGTAAAAGAAAAGTTCTCTCTAAGAGCTTTTGATTTGAca Coding sequence (CDS) from alignment at sc0000395:18644..28838+ >TCONS_00021796 ID=TCONS_00021796|Name=TCONS_00021796|organism=Clytia hemisphaerica|type=CDS|length=1023bp|location=Sequence derived from alignment at sc0000395:18644..28838+ (Clytia hemisphaerica)
ATGGGATGTTTATCCTCAACAGAAAGTGTTGAAGAGCCACCAAAACAGCC
TGTCTTCAGCTGGGATCGAGATGATAGACCTGATCCTAAAGATTACACAA
TATCTGAACAAGATGGTACTGTTTGTGGTAGGAAACCTGGCACCATCAAT
GGCCAACAGTTTATCATAGAGAATTGCAAGAATAGCTCTATTTACATTTA
CGATCATAGTGCTATGGTAACCATTGATCGTTGTGAGAATTGCACCATAT
TCATTGCGCCCATCAAAGGAAGTGTTTTTATTCGGAATTGTAAAAATTTG
AGATGTGCTATCGCTTGTCAACAATTCCGATCACGTGACTGTCAAAAGAT
TGAAACATTCTTGTATTGTCAAACACAACCGATCATCGAGTCATCTACCG
GCATGAAATTTGCTTGCTTTCAGTATTACTATCCTGAACTAGAAGAGCAA
TTTAAATTGGCTGGCCTCTCAGTATACAATAATACGTGGAGCACTATTCA
TGATTTCACTCCTGTTGAACAGTCCGAGAATTGGTCGTTGATCCCTCAAA
GCGTCACCCTAGAGCAACATGTACCTCGCCCTACTAGTGAAGAATTCGCC
GACATTGATGTCAAATTTGAGTCTGAATTGAGTGTTGTGCCTTTGACACA
ACAAAAACGAGCAGTGAAGTCTGACCAAAATTGTTTGATTGTGTTCTTTG
ATAATAATAAATCTAAGTGCAAGGAGTTTTTAAAGGAGTTGGCAAAGATC
ACCGACTATTGTATTATCCAAACGAAAGAGATTAAAATGGAGCCTGAAGA
TGTGGAACGAATCTTTAAGAAGGAAAGATTTCGTGAATTGTCTACACAAG
GTAGTGTGGTTGGTTTGGAATTAAGTGGAGAGTCAGTGATAATGAAATGT
GAAGGAGTTCTTAAAGAAATGAACGTCTCTTTGAATGATATTTTCTTATC
TAATAACGATGCTAGTGCTAAAAATGATGTAGCTGCTTTTTATAATTACA
TTGATATGATGATGAGCACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021796-exon-sc0000395-1491911889:18644..18978 | TCONS_00021796-exon-sc0000395-1491911889:18644..18978 | Clytia hemisphaerica | exon |
| TCONS_00021796-exon-sc0000395-1510915933:18644..18978 | TCONS_00021796-exon-sc0000395-1510915933:18644..18978 | Clytia hemisphaerica | exon |
| TCONS_00021796-exon-sc0000395-1575043694:18644..18978 | TCONS_00021796-exon-sc0000395-1575043694:18644..18978 | Clytia hemisphaerica | exon |
| TCONS_00021796-exon-sc0000395-1491911889:21896..21967 | TCONS_00021796-exon-sc0000395-1491911889:21896..21967 | Clytia hemisphaerica | exon |
| TCONS_00021796-exon-sc0000395-1510915933:21896..21967 | TCONS_00021796-exon-sc0000395-1510915933:21896..21967 | Clytia hemisphaerica | exon |
| TCONS_00021796-exon-sc0000395-1575043694:21896..21967 | TCONS_00021796-exon-sc0000395-1575043694:21896..21967 | Clytia hemisphaerica | exon |
| TCONS_00021796-exon-sc0000395-1491911889:24722..24820 | TCONS_00021796-exon-sc0000395-1491911889:24722..24820 | Clytia hemisphaerica | exon |
| TCONS_00021796-exon-sc0000395-1510915933:24722..24820 | TCONS_00021796-exon-sc0000395-1510915933:24722..24820 | Clytia hemisphaerica | exon |
| TCONS_00021796-exon-sc0000395-1575043694:24722..24820 | TCONS_00021796-exon-sc0000395-1575043694:24722..24820 | Clytia hemisphaerica | exon |
| TCONS_00021796-exon-sc0000395-1491911889:26509..28838 | TCONS_00021796-exon-sc0000395-1491911889:26509..28838 | Clytia hemisphaerica | exon |
| TCONS_00021796-exon-sc0000395-1510915933:26509..28838 | TCONS_00021796-exon-sc0000395-1510915933:26509..28838 | Clytia hemisphaerica | exon |
| TCONS_00021796-exon-sc0000395-1575043694:26509..28838 | TCONS_00021796-exon-sc0000395-1575043694:26509..28838 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000395 | supercontig | sc0000395:18644..28838 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007010 | cytoskeleton organization |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003779 | actin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007010 |
cytoskeleton organization |
| molecular_function |
GO:0003779 |
actin binding |
Blast
BLAST of TCONS_00021796 vs. Swiss-Prot (Human)
Match: XRP2 (Protein XRP2 OS=Homo sapiens GN=RP2 PE=1 SV=4) HSP 1 Score: 335.88 bits (860), Expect = 7.855e-106 Identity = 161/353 (45.61%), Postives = 234/353 (66.29%), Query Frame = 1
Query: 1510 MGCL----------SSTESVEEPPKQPVFSWDRDDRPDPKDYTISEQDGTVCGRKPGTINGQQFIIENCKNSSIYIYDHSAMVTIDRCENCTIFIAPIKGSVFIRNCKNLRCAIACQQFRSRDCQKIETFLYCQTQPIIESSTGMKFACFQYYYPELEEQFKLAGLSVYNNTWSTIHDFTPVEQSENWSLIPQSVTLEQHVPRPTSEEFADIDVKFESELSVVPLTQQKRAVKSDQNCLIVFF--DNNKSKCKEFLKELAKITDYCIIQTKEIKMEPEDVERIFKKER--FRELSTQGSVVGLELSGESVIMKCEGVLKEMNVSLNDIFLSNNDASAKNDVAAFYNYIDMMMS 2526
MGC S E+ EE PKQ +SWD+ ++ DPKDY S GR PGT+ GQQF+I++C+N +IYI+DHSA VTID C NC IF+ P+KGSVF RNC++ +C +ACQQFR RDC+K+E FL C TQPIIESS+ +KF CFQ+YYPEL QFK AGLS++NNTWS IHDFTPV NWSL+P+ ++ +VP PT+EE + V E+ S+VP+++ +R SD++CL+V F D + ++ + E+ + ++QTKE+ M+ ED +R+F+++ F L +G V+ LE +G+ + C+ ++ E+ + +F+S + +A DV +FYN+ D+ M
Sbjct: 1 MGCFFSKRRKADKESRPENEEERPKQ--YSWDQREKVDPKDYMFSGLKDETVGRLPGTVAGQQFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFRVRDCRKLEVFLCCATQPIIESSSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPVSGELNWSLLPEDAVVQDYVPIPTTEELKAVRVSTEANRSIVPISRGQRQKSSDESCLVVLFAGDYTIANARKLIDEMVG-KGFFLVQTKEVSMKAEDAQRVFREKAPDFLPLLNKGPVIALEFNGDGAVEVCQLIVNEI-FNGTKMFVSESKETASGDVDSFYNFADIQMG 349
The following BLAST results are available for this feature:
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