TCONS_00021819 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021819
Unique NameTCONS_00021819
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1461

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021819 ID=TCONS_00021819|Name=TCONS_00021819|organism=Clytia hemisphaerica|type=transcript|length=1461bp
TGTTTCCGTTCAGGTTCGCActtcaaaggaaaattaaaaaaaaaaccgtg
TATATTTATCATCCTGATCACATCACCAAAATCACATTTGTTCACAATGA
GTGAGAATAATAATCGTAAATTAAGCCCCTATCCAATTCCAGCAAAGCTT
TTTACTCGACAGaTTAATGGTTCAttcaaattgaagaagaaatttcataa
acaccgtctttttgaaaaatgcccCAATCGTCTTCAGATTccactgaaaa
atatatttgatgcCAAAACTTTCATGAAAGGGCATATTGCTATTGGATTC
ACTGAGGATGGAAGATATTTGTTGACTTATGTTTCTAACATTAAGTTTCA
ATTATCAGACACTTCTGTTTGCTCTTATCAATATGTCCtgcattggtgga
aatttgatctTTGGAATAAACTACAAAAGTACGGATTCTCAAAGCAATGG
AAGAATGTGTTATGTATCAATCGTCCCTAAATATAACAAGAAGAAACCTG
AACAGAATCAATATAGTGTCCATTTCAAATATGAACTGTTACCACCTCAT
CCACCATTTCTGACCACTATatctttgaaaagaaagaatgTTATACTTTT
AAATTCTGGAGATATGTTGTTTGCCATTCTGATACCTGAACCTTCAAGTT
TATTTTCTTGCGAATCAGGAAAGGATATACAGACAAGATTGTGTTACTGC
CAGCAACGCCAACAAGACGTGCTTGCAAACCAAAGCAACATAGATGTCAA
TTATGACGACTCGACTGATTATATTTCATTCATAAATCAAGGATTTAATA
CAATAAATGATAACGATTCGCAAACATCCCTTCCTGACTCTCCTTTTGAT
TGTATGACAACTGTAATACCATGTGCAATTACTACAGTTGATGGTTTGAT
ACAGTTGAAGAATAGTTATGAACACAGATGCTTTCGACATGCTGATAAAG
GTTAGGCTCATTGAGTTTAGATTCTATAGATGTATTTatgcttttatatt
tttgttgttttctacCCTGCACCATATATGGCTAGGTACTAAAATGACTC
TTTAGAAGGTCCAGTGTGATAGTGGTCAAGTGGTAGCATGCTTGAATACT
TGCTGTCGATCAGTCAGTGATGGTAAACATCTGTCACAGGTCAGTAAATG
TTATGTTAAGGTAACTACAATACAATATCTCTCCAATAAAACAATGAACA
ATATCTCTCCAATAAAACAATGAACAGTATTTATTCAATAACACAAGTAA
CGTTAActataaaacaataaaacaatgTACAATTTCACTTGTATAATTCC
AAGCTCCTCCACAACCATTATTTTGTTAGTTATTGGTAGTCTAAAGGTAA
AAGTATCACTATGGATTCTTGagattaatgatttttttttttaccttttt
caaaTCGTATACCCTTCTTGGGAATGTCCTGAAAACTTCAGGGTCATTGC
ATAAGTATTTG
Run BLAST on NCBI

transcript from alignment at sc0000395:8200..17688-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021819 ID=TCONS_00021819|Name=TCONS_00021819|organism=Clytia hemisphaerica|type=transcript|length=9489bp|location=Sequence derived from alignment at sc0000395:8200..17688- (Clytia hemisphaerica)
TGTTTCCGTTCAGGTTCGCACTTCAAAGGAAAATTAAAAAAAAAACCGTG
TATATTTATCATCCTGATCACATCACCAAAATCACATTTGTTCACAATGA
GTGAGAATAATAATCGTAAATTAAGCCCCTATCCAATTCCAGCAAAGCTT
TTTACTCGACAGGTAAGTCAATTGTTCTACAATGCCTTTTAGACAATGTA
TTTTGTATTTATTTATTTTAGCCTAACTCGTCAGTCAGACTTATTTTAGT
ACTAAGAACTTCGTATAAGTAACCCTAAATAACGAATTTTCGGCAGCCGG
TTTGGCCTAGTGGATAGGGCATTGGTTTCGAAACCTATAGGTTCCCGGTT
CGAGACCCCCTTTGGTCACTATTCAACTTGAAAAAAATTCTAAGTCCAGC
CGGATGCATCTGAAGCTTCAGCCGAATGTCTTTGATAGGTACTGTACCAT
TAGTTAGGCGACAACAAAAGTTGGACCCCTCCAATGGACCCCCAAAATGG
ACCCCAAAATGGATTCCCAAATGGAACCCAAAATGGATTCCCAAAAATGG
AACCGGCTGGTTCGGGCTTAGAGGTAATTCCCTCTGTTGAGGATGGAATG
ATTTAAAAATTAGAAATACAAAAAAAAACGTAAATTTAAACCAGACGGTG
TCAATCAAACACCTTCGAACAAAAATTGCAAATCGAACCACTCGAACGTA
ATTGATCGAATAAATGCGATTCGATTGTTGAACGTAATAGAATCTCAATC
GAACGGCCGATTCCTGGGTAATATTTGATTGTGTTCGATTGCGTTTGACA
GTATATAGTCATCTGGGGTAAAAACGGGACGAAATCGACGAACCTTTCCA
TATCTCAGGAACTTCAAAAGCTACAATCATGATTTTTGGCCAGCAACTCC
CTCTAATGGTCATCTATCAACCCTCTTAATGGTTTAAACTTATGACTTTT
AGTTTTCGCAAAATATTCACGGATATGCGTCCCGTAAATACCCCGGATTT
TGGGGTAAAAACGGGACACCCCAGGGTAAAAACGGGACACCCCAGGGTAA
AAACGGGACACCAACATAGAAAAATTTTCACTGGTTAAATACGGGACACC
TTTTTTTCAAAAACGGCACCCTGTACAAACTTGCGACTTTGGGCAGGTCA
AAATAGGGTTGTTTACTAGTCTCTATGACCCAAACATGTAGCGCCTGCAT
TTAGTACGGCGTTTATTCTAAGTCGAGAAAAAAGCGTTCTAGAAATGAAA
AATCAACGTTTCAACCACCAAGAAACATCGTGGTGTATTCTGATGTAGAG
GAATGAAGCTGATCAAAGTATGGATTTTCATTCTTCATTCTTTTCATTTT
TCATTTTTCATTCTCAATTTCAAGCCAAGATATCTTAGCAACGGGGTGCT
CGCTCATAGTTACAGGGGTTTGTGCAAAAAACTAAACATAGAAAAGTTTC
CAAATCCCCCATTTCAATTTTAAATGCAGTGAAAAACGGTTTGTGTAAAA
CGCAGGTCACAGGTCACAGGTCGTAGGTCACAGGTCACAGGTCAGTGATG
ACAGGTTAACTCTAATCAATGTCATTGCAGAGGAAAATGTTTGGAAAACA
CAAAGAATCATCAAAACATAATTCTCAAGCAATTTCATCCATATATATAA
AACCATTTCAAACATCAAAATTTAACCATGTGCTTTTATCGATCTTTCGC
AGTTTGCGCCGTGTATAACGCAGACCAGAAAATATTTGACACTATATTAT
ACGTGTAACAGGTATATTACATATTGTAATGTTATATGATGGTTACATAT
AATAAAACAAATCTTCTGATTGGTGTAATTTTATATCCAGCCATATTGTT
ATAATCACATTCGGCATGCTGAATATTTTTGGTGCTTTTCTCTTGTAAGA
CATGATATTTTGTAATTCTGTCAATATTTTTGTCAAAAATTGTCATTAAG
TCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNAGAAGAGACCAATTTCGTTTTTGTTGCAGATTTCGATATAAACTTA
ACTCAGGGATTACTTGTCAATGTGCATGTGCACAATGTGTTGTGTCAACT
TGTCAGCATTGTATTGTTGTAAAGGGAAAATAAAAGAGGTAAGACTAGCC
TAGTCTCTAATCCTGACATAGGAGTTTAAGTTTAGACTGTTTGAGTAAGG
TTAGATTGGTTCGATTGATAGTTGACTATATTCGATTGGTTCGATTGATT
GTCAATTACATTCGATTAATCTTCAATTTCGTTCTATTATGATTATATGT
TCGATGAGTTTGATTGCGATTAAATTAAATTGGATCACTTCGTTTAGAGC
TTTTTAGCGTGAACGGCCGAGCGCTACATAATCAAATACAATCAAACATA
ATCAAAGCAATCGAACAGCAAATCCTGGGTAATATTTAATTGCGATAATC
ATGGTAGTGAGATAGATTAGTTTAAAGTGCGGTCCAAATTGGGACAAAAA
ATGATCGTAAAGCAAAGAACTAAGAATTGTCTTGTGGTTATAACTCTTGA
CTGCTTGCTCTAGCGGGCTGAAAATTTACACAATCGTCCAGCAAGGCAGG
GTGATGTGATATTCCTAAGAAACAGAATTAAAAGGGTCCTTAAAATGACA
ATACATTGTCCTGTAACACAAAAAGTATGGACAACATAATGCCTATTATG
GGACAAAGTAAAATAAAAGAATTGGAAAATTTCTGACTTCACACTTGATT
TTTCTGATTTTTTGCTCAATGATGCAAAATGGTAACTAAATCCCAAATGT
TGGGTAAATTTCTTGTTTTTAATTTGTTCAAAAACTAATATCAAAACTAA
TATCAAAAATGTGAAAAGTGAATTATTTTGAATTTTTTTTATTGAAATGT
CAGACATAGTGTGAACCCCCCTTTTTTAAGTGGGGAATCCAACTTTTCAA
GAAAGGCTTTATAGGGGGATAAGAGATTTTCCGAGTAAAATGAGGGGTTT
GAGTTTTTAGGGGGTATTGAATAAAAATAGGGGGATAACAACTTTTTGGT
AAAAATATGTATTATATCTTAAATTGGTCAAAGAATTGGGTATAGTCCAA
CAAGATAGCAATGTAAATGAGATCATGTATTTTATAATTTTTTCGCTGCT
AATTTTCAAAGTCAAAATGGTATTGCATCCTTCATCATTTCATTATAGAC
CGTGGCCAAGGGCTCACAATATTTCACTTTTCTCAAAATGTAATAAACTT
GTGATATGTTTCTTACTCAAATTGAAGGTTAAAAAGACTGGCAAGCAATA
AAAGAAAAAAGATTAGTGTGAATATCTGACGTAAATTAAAATTTATGATC
CAGACAGTTTGCTGGTCCTATAAGAGGCACTTTTCCAGGCATGAGCATTT
TGAATAAATGTTGTAAAAATTCTTATTTTAGATTAATGGTTCATTCAAAT
TGAAGAAGAAATTTCATAAACACCGTCTTTTTGAAAAATGCCCCAATCGT
CTTCAGATTCCACTGAAAAATATATTTGATGCCAAAACTTTCATGAAAGG
GTAAGGTTTTTGTATGTAATTGACCAAGGCCTAATTGAGAGCAGGCTTTC
CTGGACATTTCATTATATTATAATACAGTATTTCTAGATTCAAAGTTGAG
CCAAAAGTAGATGATATGTATCTGACTATTGTTAATCTCGTATTGTCATA
TGTGACTCCCCAAGCGATTTTAAGTGCCTATGAAAAGACTGGTCCAGACT
GATCAGCCGAAATACAGTAAAAAACCCTTCCTTCTTTCTTTGTCTTCATT
TTGTACTCAATCTATTCTGTCTTTAAAAATCTTTTTTTTTTAACAAAAAG
ACTCCCTGTCCCCTGCTTGTATTTCCCTCGCAAAAAAGACACCCCCTGAC
TTAGTTTAGCCTCTTCTATAATTGTTTCTCCTTCCTGACTAAGCACATAC
CCCTGTCTCACTTTGATCTCCATGAGCTGATCCAACTTTGATTTCCTTGT
AGCGAAAAGACACCCCTGTCTCTCTTTGACCTTATTCTGATATTCTAGAT
ATTCTGTGTCCTTGGAAACTATAAGTTACCCCAACCTCAATTTGACCCGT
CTGTTTGACCCTCTTCTGTTTTACAAACTCTGTTCTTTATTTCATATACC
GTTTGTTTACGGCCTTCTATTATTATAACCGAAACAATATACAATAAAAA
TTAATTATCTTACCTTTCTTCTTTATCTTTGATGAAAGTTGTAAGTCTTT
TTTTCTCATCATAGTAAATTAATCTCACTTTGCAGCTAACAAACTGGTTT
TCTAAAAGTCCCACTAGAGTCCCACTTTATAACTGTTAAGTGAAGGGAAA
AAGAGTGAAAAAATATGAGCACTAGATTTGGTTTCTTGAGACATTACAAC
ATATAAGTAGTGGAAAACCTGAATTTCGGCTCTGGGATTTAAAGGGGTTA
TTCCATTGGAAGAAAGTGGAAGAGTTAAATTTCTTTGGACTTATCTTTTC
AGGCATATTGCTATTGGATTCACTGAGGATGGAAGATATTTGTTGACTTA
TGTTTCTAACATTAAGTTTCAATTATCAGACACTTCTGTTTGCTCTTATC
AATATGTCCTGCATTGGTGGAAATTTGATCTTTGGAATAAACTACAAAAG
GTAAGGACTTCATTGATATTTATTCGTAGAATCATTTTTGGACCTACCTC
GAAGGTCCTTTAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
AGAAACTTTCGCGAGGACGAAAAATCGCGAAATTCACGACATTTACTTTC
GCGAATTTAACGGAAAAACATTTTTCGCAAGCATAAACTTTCGCGAATCA
GGACGTAAAATTGAGAATTTTCACATGAAAAATGGCTTACAGGGTCAAAT
ACTTCTTGGATTGGCTTGAAACATTATTTGTCCTTTGACTTTTTAGTCTT
TTAGCAGGCTAAAAAGTGCCATAAAAGTAAGTTACATTTTATTCAAAGTT
TTACAGATTTTCTATTTTGTCAAGAATTTTTCGCGAGGATAAACTTTCGC
GAATGGCCCTTATTAGAATTTTTAAAGACATTTACTTTCGCGAAAAGGGC
CAGAATGCGCAAAAATCGCGAAAGTTTCTGCTAGCGAAAGTTTGTACTTC
CTTTTCTATTTCCATTCTTTATTTATCATTAGGTAGGTCCAATATGCATT
ACCAGATTGTGCTTGTTTTTTTTTGAAGTATTCTCTTTTTCTTTTTGGAC
CTACCCCGGTGGGGTAGAGGTCCTATAAATTAATCAATGTCCGTTCGTTC
GTCCGTTCGTTCGTCCGTCTGTTACCAGCTTTTCTCAGGATTGGCTCATT
AGTTTTTCTGATTTTTCATTTTAAACCTTCACTTTCGAATCAACTTTTCT
TTCTATTTGATAATATTCTAATTCAACTCTTGAATATATTTTCAACATGC
ACAAAACCACTGTCTAATTCAATCAAAAGTTACACCTTTTCCCCCCCCNA
ACATGCACCAAACCACTGTCTAATTCAATCAAAAGTTACACCTTCCCCCC
CCCCTACAGATTATTCGGAGAGAGATTTTAAGACAAATTTTTGCAGTTTT
TAAAGTCTTTTGCTCCTGCTTTTTGTTTCAGGTATATGAAGTTGAATTAT
TTGCAAAGGAAACAATTTCAAACGTCAGGATTCTGCGACTGATTATATTG
TGGTTCATGCATCTCTTGTCAAGTAACGACTCCTTTTCTCCGACAGACTT
TGCAATTAAAAACCATAGATCAACGATTATAGTTGTTATAAAGTTTCTGT
ATTACTCCAGGCTATTTCTCTAACTAAACACTTAATTTTTTACATATCGT
AAACGCCCCGGGTGTTCATTAAATTTTTTGGATTTTTGGGGTGTTTAAAA
GAAGGGGGCGTTTATTTGATAAGTTATGAACAAGGTCACTTTAGTAACGT
GTATTGGAACCTCATTTTTCCTTTCTATTATTATTTGAATATAAATATGT
CAATTTAGGGATGTAGAAATGGGTCAAAACCAGGTCGAATACAAAAAGAG
TATAATTATTGTTGTATATCTAAGTTTTCTTCATATTATACTTCCTTACT
GCTACCTGTTTCAAATAAATGCCCCTCCTAGGGGGGGGGGCGTGGCGTTT
ATTTGAAGGTGAGGGGGCGTTCATTGAAAATTTTTCCTTAAAGGAGGTGC
GTTTATTCGAGGGGGCGTTTATTCTAAGTGAAACGGTATATTATTATCCT
TTTTCAGTACGGATTCTCAAAGCAATGGAAGAATGTGTTATGTATCAATC
GTCCCTAAATATAACAAGAAGAAACCTGAACAGAATCAATATAGTGTCCA
TTTCAAATATGAACTGTTACCACCTCATCCACCATTTCTGACCACTATAT
CTTTGAAAAGAAAGAATGTTATACTTTTAAATTCTGGAGATATGTTGTTT
GCCATTCTGATACCTGAACCTTCAAGTTTATTTTCTTGCGAATCAGGAAA
GGATATACAGACAAGATTGTGTTACTGCCAGCAACGCCAACAAGACGTGC
TTGCAAACCAAAGCAACATAGATGTCAATTATGACGACTCGACTGATTAT
ATTTCATTCATAAATCAAGGATTTAATACAATAAATGATAACGATTCGCA
AACATCCCTTCCTGACTCTCCTTTTGATTGTATGACAACTGTAATACCAT
GTGCAATTACTACAGTTGATGGTTTGATACAGTTGAAGAATAGTTATGAA
CACAGATGCTTTCGACATGCTGATAAAGGTTAGGCTCATTGAGTTTAGAT
TCTATAGATGTATTTATGCTTTTATATTTTTGTTGTTTTCTACCCTGCAC
CATATATGGCTAGGTACTAAAATGACTCTTTAGAAGGTCCAGTGTGATAG
TGGTCAAGTGGTAGCATGCTTGAATACTTGCTGTCGATCAGTCAGTGATG
GTAAACATCTGTCACAGGTCAGTAAATGTTATGTTAAGGTAACTACAATA
CAATATCTCTCCAATAAAACAATGAACAATATCTCTCCAATAAAACAATG
AACAGTATTTATTCAATAACACAAGTAACGTTAACTATAAAACAATAAAA
CAATGTACAATTTCACTTGTATAATTCCAAGCTCCTCCACAACCATTATT
TTGTTAGTTATTGGTAGTCTAAAGGTAAAAGTATCACTATGGATTCTTGA
GATTAATGATTTTTTTTTTTACCTTTTTCAAATCGTATACCCTTCTTGGG
AATGTCCTGAAAACTTCAGGGTCATTGCATAAGTATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012245XLOC_012245Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021819-exon-sc0000395-1575043694:17527..17688TCONS_00021819-exon-sc0000395-1575043694:17527..17688Clytia hemisphaericaexon
TCONS_00021819-exon-sc0000395-1575043694:13489..13607TCONS_00021819-exon-sc0000395-1575043694:13489..13607Clytia hemisphaericaexon
TCONS_00021819-exon-sc0000395-1575043694:12389..12536TCONS_00021819-exon-sc0000395-1575043694:12389..12536Clytia hemisphaericaexon
TCONS_00021819-exon-sc0000395-1575043694:8200..9231TCONS_00021819-exon-sc0000395-1575043694:8200..9231Clytia hemisphaericaexon
TCONS_00021819-exon-sc0000395-1510915933:17527..17688TCONS_00021819-exon-sc0000395-1510915933:17527..17688Clytia hemisphaericaexon
TCONS_00021819-exon-sc0000395-1510915933:13489..13607TCONS_00021819-exon-sc0000395-1510915933:13489..13607Clytia hemisphaericaexon
TCONS_00021819-exon-sc0000395-1510915933:12389..12536TCONS_00021819-exon-sc0000395-1510915933:12389..12536Clytia hemisphaericaexon
TCONS_00021819-exon-sc0000395-1510915933:8200..9231TCONS_00021819-exon-sc0000395-1510915933:8200..9231Clytia hemisphaericaexon
TCONS_00021819-exon-sc0000395-1491911889:17527..17688TCONS_00021819-exon-sc0000395-1491911889:17527..17688Clytia hemisphaericaexon
TCONS_00021819-exon-sc0000395-1491911889:13489..13607TCONS_00021819-exon-sc0000395-1491911889:13489..13607Clytia hemisphaericaexon
TCONS_00021819-exon-sc0000395-1491911889:12389..12536TCONS_00021819-exon-sc0000395-1491911889:12389..12536Clytia hemisphaericaexon
TCONS_00021819-exon-sc0000395-1491911889:8200..9231TCONS_00021819-exon-sc0000395-1491911889:8200..9231Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000395supercontigsc0000395:8200..17688 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.4645	1.7607	4.6027	2.24045	0.552834	0.608309	0.452293	0.722098	0	0.307593	0	0.340014	0	0	0	0	2.13396e-07	0.706599	0	0.712037	1.04137	1.76516	2.02752	2.84186	0	5.68088e-10	1.53693	0.0397772	0.57664	0.892811
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021819 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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