TCONS_00021834 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021834
Unique NameTCONS_00021834
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1967

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021834 ID=TCONS_00021834|Name=TCONS_00021834|organism=Clytia hemisphaerica|type=transcript|length=1967bp
agatttttgaattgataaatatcaaaataacaTCAATATGCTTGGAGATG
AAGACGAGACATCAAGTTTACAAGAAGAGGAAATGCTTCGAGGTGGAGGG
GACTTAGATACACATTCTGATCTTGATAGAAACTCGACCAACCTTTTACT
GAGAGCGAAACAGTTTTCAACCGATTCTATGGCAAGTTATGGATCCATAA
ACAGCGCGCATTATGATAATATTAAACCTGGATTAAAACCTGGTGTCTCT
TTTGACAGTATCAGCGATAACAAAATCGCTAATATAAAGAAGATGTTTTT
CGGACGGCGAGTTGACTCTTTAACCGAACCAGGCGAGTTTGAGGACGACC
ATTTAATAACTCGCCAGGATAAAGCAAACTGCACGCTCATACTTTTCGCT
TTGAAACATTCaatgaaaatatttcttgttaCTTCGCCTACCATTTTGAT
TGCATGCTGTTTTGTGATTGGATTGAGTTATATACCATGGACGGACGTAC
CTTCATGCAATAACAACGCAACACAGCCATGTACGCACTACCGAAAAGAG
TATTTGGTCTACTTCAACACCTATCTCAGATTGaTTCTCCTCTCAACCAC
TTCCGTCTTTATCACCAATATCGCTTTAGACGGCAgccgacaaattttca
aaaacattctcTACGTGAGCATCCCACTTGTCACCATAGCGACAGCTTTA
ATACCAGGCCTCTTGAAATACAATGACGTCATACTATACTATTACGTAGA
CATTTTCTTATGTGGATTGTTCTTTTTGGTTGGGATGGTGGCTTCGGTTT
TTtgtttatcgaaaaatttagaaGTTCAAATCACAAGGAAAcgaattttt
caagttttggtAATTCCGAGTATAATCGCTGTACTTGGTGTGAATGTTCT
AGACGCAGTTGTCAATAAAGaatatcaaatattttcaaagggtTCCATTG
GTCAATACGTGGTTAGGCTTGTTATTTATCCGATCACAGTCGACATACTA
TTGGCTATCACTGAAACGAACGTTCAAAAAATCCCCTCCAATCACATCAA
TAATCCTAGCCACGTGGTTTATTTCTATCAAGTCGCTTTCACCATTATTG
GTCGTTACATGACAACTATATCAGGAGGCATTATGGATATTTTCATAATG
GCAGCCTCAGTAGCGGGAAAGGATTTCATTCTACATCGAATGGGTCGTAT
CCGATGTTGGTTGGCATTTCATACACGAACACTCCTAGTAAAATTCTATC
CACCTTATGCAAATACAGTTGATTATGAGACTTTCAAAGACTGGTTTTAC
TCTAAAGATTTCACATACTTCAAAGCGAATACGTTAAACAGTGACTTTGC
AGTTGAACTAACAGGTGTTATCATCGTACCAGCCATCTTGGCAACCTCCA
ACAAACATTCCTCACTATATTCTTTCCAAGATAAAAGTTTCTTAAACTCT
GATGGAACACACAACTACATTTACATCTTACAGCAAGAAGCAATTCAAAT
CAGCCTCGTTTTCATATCGATCATCATAGTGACCTACATTGAAGCCAAAT
TCAATCGAGTCAACCTCACAGCAGTGGTCAAACGAAAAAGTTACGCACAA
TACATTTCAGAGACATTGATTTATTTATGGGGCATTTTGCTCTTTTTATC
ATCCGTTAAAACGACACCGAATTATTTACAGTGCGATGATATGACAGTGT
GCAATTGTGATTGGCAAATAGATGCTACAAAGTATGGGTGCTAAGAAtat
ttcttccttttcttcacGTACGAAATCAAGTTACAGACTATGCCAAAATA
CTCGGCACCAAAtacatcttcattttttaattcatgatattcaactcaaa
aacatcttttcaacgagcacaaaactgCTATCTAATCCGTATTCTATCAG
AATTTAAACCTATTTTGTTGtcactgcagattatattgaggcAGAATATA
CTATATCCCAATTCCAT
Run BLAST on NCBI

transcript from alignment at sc0000395:187751..193253-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021834 ID=TCONS_00021834|Name=TCONS_00021834|organism=Clytia hemisphaerica|type=transcript|length=5503bp|location=Sequence derived from alignment at sc0000395:187751..193253- (Clytia hemisphaerica)
AGATTTTTGAATTGATAAATATCAAAATAACATCAATATGCTTGGAGATG
AAGACGAGACATCAAGTTTACAAGAAGAGGAAATGCTTCGAGGTGGAGGG
GACTTAGATACACATTCTGATCTTGATAGAAACTCGACCAACCTTTTACT
GAGAGCGAAACAGTTTTCAACCGATTCTATGGCAAGTTATGGATCCATAA
ACAGCGCGCATTATGATAATATTAAACCTGGATTAAAACCTGGTGTCTCT
TTTGACAGTATCAGCGATAACAAAATCGCTAATATAAAGAAGATGTTTTT
CGGACGGCGAGTTGACTCTTTAACCGAACCAGGCGAGTTTGAGGACGACC
ATTTAATAACTCGCCAGGATAAAGCAAACTGCACGCTCATACTTTTCGCT
TTGAAACATTCAATGAAAATATTTCTTGTTACTTCGCCTACCATTTTGAT
TGCATGCTGTTTTGTGATTGGATTGAGTTATATACCATGGACGGACGTAC
CTTCATGCAATAACAACGCAACACAGCCATGTACGCACTACCGAAAAGAG
TATTTGGTCTACTTCAACACCTATCTCAGATTGGTAAGAAACATTTACTA
AGCCTCTAAGCAATAAAGTGAAAAGGCAAACCTCGTGTGCAGGGTTTGAT
TTCAAGATGACAATTTTTCGCTTTAAGCCATTTGACTTTATAATTCATTC
CCTATAAGCCCTGGTATTACAAGAAGAAACATCCACTCCCCGTCATTCGT
TCCTGTGAACATAATTCCCGAATTCATCATCATTCTTAAAATTGACCTTT
TTCTCTTACGAGTGAAAAACCTTTCTACTTATCGATACTTATCTTATGAT
ATGATAGTGGACGAAACTACATTCAACACTCTTTAGCTCGACGTTCTACT
ATACGACACGCCCCATTCATCATTCGATATTATTGAAAGTCACCGTCTAT
AAGAAACTCTCACTAGCGACGCTCTACTATTCGATATGGAATTCCAATTA
TCCTTAGAAATCGAATAAGAGAGCGGCAAGTGTATACAAAGAACCTGTCA
ATGGGCTCCTCCAGAAAAAAACTTGAATATGGGGGGGGTGGATGATATAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTTTATTTTCTAATTTCAGATTTTT
GAATTGATAAATATCAAAATAACATCAATATGCTTGGAGATGAAGACGAG
ACATCAAGTTTACAAGAAGAGGAAATGCTTCGAGGTGGAGGGGACTTAGA
TACACATTCTGATCTTGATAGAAACTCGACCAACCTTTTACTGAGAGCGA
AACAGTTTTCAACCGATTCTATGGCAAGTTATGGATCCATAAACAGCGCG
CATTATGATAATATTAAACCTGGATTAAAACCTGGTGTCTCTTTTGACAG
TATCAGCGATAACAAAATCGCTAATATAAAGAAGATGTTTTTCGGACGGC
GAGTTGACTCTTTAACCGAACCAGGCGAGTTTGAGGACGACCATTTAATA
ACTCGCCAGGATAAAGCAAACTGCACGCTCATACTTTTCGCTTTGAAACA
TTCAATGAAAATATTTCTTGTTACTTCGCCTACCATTTTGATTGCATGCT
GTTTTGTGATTGGATTGAGTTATATACCATGGACGGACGTACCTTCATGC
AATAACAACGCAACACAGCCATGTACGCACTACCGAAAAGAGTATTTGGT
CTACTTCAACACCTATCTCAGATTGGTAAGAAACATTTACTAAGCCTCTA
AGCAATAAAGTGAAAAGGCAAACCTCGTGTGCAGGGTTTGATTTCAAGAT
GACAATTTTTCGCTTTAAGCCATTTGACTTTATAATTCATTCCCTATAAG
CCCTGGTATTACAAGAAGAAACATCCACTCCCCGTCATTCGTTCCTGTGA
ACATAATTCCCGAATTCATCATCATTCTTAAAATTGACCTTTTTCTCTTA
CGAGTGAAAAACCTTTCTACTTATCGATACTTATCTTATGATATGATAGT
GGACGAAACTACATTCAACACTCTTTAGCTCGACGTTCTACTATACGACA
CGCCCCATTCATCATTCGATATTATTGAAAGTCACCGTCTATAAGAAACT
CTCACTAGCGACGCTCTACTATTCGATATGGAATTCCAATTATCCTTAGA
AATCGAATAAGAGAGCGGCAAGTGTATACAAAGAACCTGTCAATGGGCTC
CTCCAGAAAAAAACTTGAATATGGGGGGGGTGGATGATATAACATTTTTA
GGAAATTTCCCCCCCCCCCCGGACATTGATAATTTTGACCCCCGGACGGA
TCTCGCCCCCGGACAAGCATCAGTTGACTCCCCACATTCAAAATCACCCC
TAATCACAGCAAAATTTACAGATTTTTCACTCCCCTCCCCTCGACAACAT
ATCCAATATATCCTCCACCCATAGATTTATAAAGCCTGAAGGGCTAGATG
GAGTGCTTTAAGCTCTTCCAAGCAAAAAAAAAGTGAATATCGAAAAAAAT
ATTGCTGCTATTGTTTTCGAAAACCCTAAATTCTATTGTAATGTCACGTA
ACTTAGGTAGGATTTCCTACCTAACCTACCTCCTTCCTACCTACCTAACC
TCGGCACAATTTTCAGCAAAAGCACGATATCTAGCCCTTCGGGCTTTATA
AATCTATGCCTCCACCCTCATGTACAAAAACTTTCTGGAAGAGCTCAATC
CTGAAAAATATTTCTCTTTTTCATTTCTTTTCAGATTCTCCTCTCAACCA
CTTCCGTCTTCATCACCAATATCGCTTTAGACGGCAGCCGACAAATTTTC
AAAAACATTCTCTACGTCAGCATCCCACTTACNCCCTAATCACAGCAAAA
TTTACAGATTTTTCACTCCCCTCCCCTCGACAACATATCCAATATATCCT
CCACCCATAGATTTATAAAGCCTGAAGGGCTAGATGGAGTGCTTTAAGCT
CTTCCAAGCAAAAAAAAAGTGAATATCGAAAAAAATATTGCTGCTATTGT
TTTCGAAAACCCTAAATTCTATTGTAATGTCACGTAACTTAGGTAGGATT
TCCTACCTAACCTACCTCCTTCCTACCTACCTAACCTCGGCACAATTTTC
AGCAAAAGCACGATATCTAGCCCTTCGGGCTTTATAAATCTATGCCTCCA
CCCTCATGTACAAAAACTTTCTGGAAGAGCTCAATCCTGAAAAATATTTC
TCTTTTTCATTTCTTTTCAGATTCTCCTCTCAACCACTTCCGTCTTTATC
ACCAATATCGCTTTAGACGGCAGCCGACAAATTTTCAAAAACATTCTCTA
CGTGAGCATCCCACTTGTCACCATAGCGACAGCTTTAATACCAGGCCTCT
TGAAATACAATGACGTCATACTATACTATTACGTAGACATTTTCTTATGT
GGATTGTTCTTTTTGGTTGGGATGGTGGCTTCGGTTTTTTGTTTATCGAA
AAATTTAGAAGTTCAAATCACAAGGAAACGAATTTTTCAAGTTTTGGTAA
TTCCGAGTATAATCGCTGTACTTGGTGTGAATGTTCTAGACGCAGTTGTC
AATAAAGAATATCAAATATTTTCAAAGGGTTCCATTGGTCAATACGTGGT
TAGGCTTGTTATTTATCCGATCACAGTCGACATACTATTGGCTATCACTG
AAACGAACGTTCAAAAAATCCCCTCCAATCACATCAATAATCCTAGCCAC
GTGGTTTATTTCTATCAAGTCGCTTTCACCATTATTGGTCGTTACATGAC
AACTATATCAGGAGGCATTATGGATATTTTCATAATGGCAGCCTCAGTAG
CGGGAAAGGATTTCATTCTACATCGAATGGGTCGTATCCGATGTTGGTTG
GCATTTCATACACGAACACTCCTAGTAAAATTCTATCCACCTTATGCAAA
TACAGTTGATTATGAGACTTTCAAAGACTGGTTTTACTCTAAAGATTTCA
CATACTTCAAAGCGAATACGTTAAACAGTGACTTTGCAGTTGAACTAACA
GGTGAGTAATGATCCTTCAAAGATCTCATAACTTGTTCTGATAGAACTTA
GACTGAAATTTGTGTGACGTCAGACAAGAACCTTTGTAAAATTGTGGACT
GACAAAAAATGTGAGTAATTCTGCAGAAAACTCAAATGACAAGTTTTAGA
CACTCTATAATCCTTTTCAAAAATTAGTTCCATTACACTCGAATTTTCAT
GTCTTGCAAAAGAATGCATAGGAGTACATTCGCAAGACCTTAAGAAAATC
ACTTCAAAATGTATGAACCTTTCTTCCCAATACTAAGTTTTTTTGCTTTC
TCAAGCATTCCTCAGTTGGTTTTCAAAATGTATCTCGATATTTATTCCAG
GTGTTATCATCGTACCAGCCATCTTGGCAACCTCCAACAAACATTCCTCA
CTATATTCTTTCCAAGATAAAAGTTTCTTAAACTCTGATGGAACACACAA
CTACATTTACATCTTACAGCAAGAAGCAATTCAAATCAGCCTCGTTTTCA
TATCGATCATCATAGTGACCTACATTGAAGCCAAATTCAATCGAGTCAAC
CTCACAGCAGTGGTCAAACGAAAAAGTTACGCACAATACATTTCAGAGAC
ATTGATTTATTTATGGGGCATTTTGCTCTTTTTATCATCCGTTAAAACGA
CACCGAATTATTTACAGTGCGATGATATGACAGTGTGCAATTGTGATTGG
CAAATAGATGCTACAAAGTATGGGTGCTAAGAATATTTCTTCCTTTTCTT
CACGTACGAAATCAAGTTACAGACTATGCCAAAATACTCGGCACCAAATA
CATCTTCATTTTTTAATTCATGATATTCAACTCAAAAACATCTTTTCAAC
GAGCACAAAACTGCTATCTAATCCGTATTCTATCAGAATTTAAACCTATT
TTGTTGTCACTGCAGATTATATTGAGGCAGAATATACTATATCCCAATTC
CAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012253XLOC_012253Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021834-exon-sc0000395-1575043694:192671..193253TCONS_00021834-exon-sc0000395-1575043694:192671..193253Clytia hemisphaericaexon
TCONS_00021834-exon-sc0000395-1575043694:188703..189483TCONS_00021834-exon-sc0000395-1575043694:188703..189483Clytia hemisphaericaexon
TCONS_00021834-exon-sc0000395-1575043694:187751..188353TCONS_00021834-exon-sc0000395-1575043694:187751..188353Clytia hemisphaericaexon
TCONS_00021834-exon-sc0000395-1510915933:192671..193253TCONS_00021834-exon-sc0000395-1510915933:192671..193253Clytia hemisphaericaexon
TCONS_00021834-exon-sc0000395-1510915933:188703..189483TCONS_00021834-exon-sc0000395-1510915933:188703..189483Clytia hemisphaericaexon
TCONS_00021834-exon-sc0000395-1510915933:187751..188353TCONS_00021834-exon-sc0000395-1510915933:187751..188353Clytia hemisphaericaexon
TCONS_00021834-exon-sc0000395-1491911889:192671..193253TCONS_00021834-exon-sc0000395-1491911889:192671..193253Clytia hemisphaericaexon
TCONS_00021834-exon-sc0000395-1491911889:188703..189483TCONS_00021834-exon-sc0000395-1491911889:188703..189483Clytia hemisphaericaexon
TCONS_00021834-exon-sc0000395-1491911889:187751..188353TCONS_00021834-exon-sc0000395-1491911889:187751..188353Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000395supercontigsc0000395:187751..193253 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.249397	0.173744	0	1.08585	0.377542	1.5865	1.98548	0	0.724261	0.91947	0.437555	0.460643	0.507337	0	0	0	0	0	0	0.0989097	0.0856549	0.200537	0.19195	0	0.0490127	0.126247	0.187037	0.0340636	0.0304281
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021834 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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