TCONS_00021895 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021895
Unique NameTCONS_00021895
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length831

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021895 ID=TCONS_00021895|Name=TCONS_00021895|organism=Clytia hemisphaerica|type=transcript|length=831bp
GTCGTAACAGATATACGAATTGTGACAAATTCAAAGCTTACTGCAAATAT
CATTCATCCTTCGAAATCTTTTGTCCAATCACATGTGATAAATGTAAAAT
AGAGACAAAAGATGTTCCCAGTTACATTACTGGAGGATATGGTCTTGATC
GATTCACAATCACAGAAGAACAACGTAAAGTCATCAGCGACAGTTGCTTA
GCCGCTCATAACGCCAAGCGAGCCTTACACATCAACACTCCACCTCTACA
ATACAATGATGCTCTAGCAGAGAGAGCGCAATGGTATGCTGAATATTTGG
AGCTCCAGAATGAGTGGGAACACGACCCTTGCATGAGTTTCGGACATGGT
TCAACACATATTGGagaaaatttgtataaaatgacCCTAGATTTGAAAAG
ACATGGATGGGAGGCAGCAGATATGGCCAAACAAATTGAAGTAGCTATTC
AGTTATGGTATGACGAGATCGAAAATTACGACTTCACTACAGGACAAATG
AAAGATGAGTACGGCGTTGTTATTGGACACTTGACTCAACTTTTGTGGGA
CACAACCGCAGAGGTGGGATGCGGTGTGGTGACGGGCCCATCTGGTACTT
TTGTCGTCGCAAGATACAGCCCGGGCGGTAATATCTCCGGAAGATACACA
CAACATGTTCATCCACTTATAAAGGAAGAGAATCACTAAAAACTCTTTTT
GGAATCAAATCTCTTTTTATCTTaattatttatcaaaattttcatttcaa
gaaAAGTTATATGTAAAAGTTATTCTACAATAACTAGCCGTTCCGGTGTT
GTCCGAGATGACTCACTCGCTTTAATTTTGC
Run BLAST on NCBI

protein sequence of TCONS_00021895-protein

>TCONS_00021895-protein ID=TCONS_00021895-protein|Name=TCONS_00021895-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
RNRYTNCDKFKAYCKYHSSFEIFCPITCDKCKIETKDVPSYITGGYGLDR
FTITEEQRKVISDSCLAAHNAKRALHINTPPLQYNDALAERAQWYAEYLE
LQNEWEHDPCMSFGHGSTHIGENLYKMTLDLKRHGWEAADMAKQIEVAIQ
LWYDEIENYDFTTGQMKDEYGVVIGHLTQLLWDTTAEVGCGVVTGPSGTF
VVARYSPGGNISGRYTQHVHPLIKEENH
Run BLAST on NCBI

transcript from alignment at sc0000396:80760..83084-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021895 ID=TCONS_00021895|Name=TCONS_00021895|organism=Clytia hemisphaerica|type=transcript|length=2325bp|location=Sequence derived from alignment at sc0000396:80760..83084- (Clytia hemisphaerica)
GTCGTAACAGATATACGAATTGTGACAAATTCAAAGCTTACTGCAAATAT
CATTCATCCTTCGAAATCTTTTGTCCAATCACATGTGATAAATGTAAAAT
AGAGACAAAAGATGTTCCCAGTAAGTAATCCAACCATACTTCCTTTTCCA
TCTCTGTACCAAGTTTATGTATGTGAGTTTTCAGCGACAGAAACGGTAAG
GTTCTAATTTGACTAGATCATGACCAACTGAGGACGACGGTAAATCAGCA
GTTTTACCGTCCTCGATTTTGCAGGGCAGTATTGCGGGTTATTTCAAATT
GCCTTAGTCACCTTACCGTCCTTAAAAGCGCAAATACATAAACTCACTTG
TGTATCCTTATAGTCCGTATATTCTCAAAATATCCCTTAATATTCAACTA
AAGTGGCTTCGTGATTTCAACATATTGCGGTTTGCAATTAATAATATTGT
TTCAACGAATAAGAAATCCATGCCCACCGAAGTACTGTAGAATGATAATG
AATTTTAGGTTACATTACTGGAGGATATGGTCTTGATCGATTCACAATCA
CAGAAGAACAACGTAAAGTCATCAGCGGTAAGAACTAAAGTTTCTATGAA
TTAAATGCTACAAGTACTAATGGAAAGATGGTAGGCTATAACAAAAAAAA
AGTATTTTTCAGTGGAAAACTACTGACTATGTATTTTTTTACCTGGACAG
CAATTATCTTGAACTCATCAACGAGAATAGAGAGCTTACGTATCATCCAC
ACCGGTCCTGCTTTATCGACGGTCAAGACAGTTGCTTTTCATTACATCCG
TAACTGACTGAGTACGGCGGTGATTTTTATCGTTCCTCGATCTTACAGGT
CAAAACTGCGTTACGTGATGTTCAAAACAGTGTCAACTTCTCCCTAAACC
TAAGTATCGTAGATAGTTAAATCGCTAGTTTCTGGACTAGGAATCTGGAA
ATATTTAATAAACTAATTCACTTTTCTCCTTACAGACAGTTGCTTAGCCG
CTCATAACGCCAAGCGAGCCTTACACATCAACACTCCACCTCTACAATAC
AATGATGCTCTAGCAGAGAGAGCGCAATGGTATGCTGAATATTTGGAGCT
CCAGAATGAGTGGGAACACGACCCTTGCATGAGTTTCGGACATGGTTCAA
CACATATTGGAGAAAATTTGTATAAAATGACCCTAGATTTGAAAAGACAT
GGATGGGAGGCAGCAGATATGGCCAAACAAATTGAAGTAGCTATTCAGTT
ATGGTACGTATGAAGATATCAAGGGTGTGGTTCTGTAAAATGTTTAGTGT
CACTGTTCCCCCCCCCCCCCCCAACATAACCATGAATTGCTTGGATGACT
TTTTGGAGGAGACACTGGAATCTGAATACATTAGAGTTTCTTTAACTCGA
ACCTCTAACTCGAATCTCTCCTTAACTCGAACAAGTTTTTTGTCCATTAA
GTTAACAATGCCTTATAAACCTTACTCTATAATTCGAAATTTCCATGACT
CGAACAAATGTGTGTTCCCATGCGGGTTCGAATTATGGAAACTCGACTGC
ATCACCAAAATAGAGTTTGTATCTATTTTTTATTCCATTCATAGGTGGGA
AAAATGTGTTAGACAAAATGTGATTTATTGGCAGTGACTTTAGTCTGTAC
ATAGACCCGTTATTTACGGCTAATTTCAAAATTCATTGCCGTAGAGGGTC
TGTTGTCATTGTCTTTTCTTCTGATTTGAGATTTTTCAAATCGGCCACTG
CGATGGAGTGTGGATAAGAGAGGGGAAACAGCAAGAGAGGTGCTGCTATT
TATAAATCAAACTTTATCGCAGAGGTTTTCGTATGGGAATTCTTTTATCA
AACAGACAGAGTGTATTACGAAACAATAAACGTGAGATACACTCTGGTAC
AGACTATAGTAACTTGAGCTACATATTATTTAATTTGATTTTCCTCTCCA
GGTATGACGAGATCGAAAATTACGACTTCACTACAGGACAAATGAAAGAT
GAGTACGGCGTTGTTATTGGACACTTGACTCAACTTTTGTGGGACACAAC
CGCAGAGGTGGGATGCGGTGTGGTGACGGGCCCATCTGGTACTTTTGTCG
TCGCAAGATACAGCCCGGGCGGTAATATCTCCGGAAGATACACACAACAT
GTTCATCCACTTATAAAGGAAGAGAATCACTAAAAACTCTTTTTGGAATC
AAATCTCTTTTTATCTTAATTATTTATCAAAATTTTCATTTCAAGAAAAG
TTATATGTAAAAGTTATTCTACAATAACTAGCCGTTCCGGTGTTGTCCGA
GATGACTCACTCGCTTTAATTTTGC

Coding sequence (CDS) from alignment at sc0000396:80760..83084-

>TCONS_00021895 ID=TCONS_00021895|Name=TCONS_00021895|organism=Clytia hemisphaerica|type=CDS|length=2748bp|location=Sequence derived from alignment at sc0000396:80760..83084- (Clytia hemisphaerica)
GTATGACGAGATCGAAAATTACGACTTCACTACAGGACAAATGAAAGATG
AGTACGGCGTTGTTATTGGACACTTGACTCAACTTTTGTGGGACACAACC
GCAGAGGTGGGATGCGGTGTGGTGACGGGCCCATCTGGTACTTTTGTCGT
CGCAAGATACAGCCCGGGCGGTAATATCTCCGGAAGATACACACAACATG
TTCATCCACTTATAAAGGAAGAGAATCACTAAACAGTTGCTTAGCCGCTC
ATAACGCCAAGCGAGCCTTACACATCAACACTCCACCTCTACAATACAAT
GATGCTCTAGCAGAGAGAGCGCAATGGTATGCTGAATATTTGGAGCTCCA
GAATGAGTGGGAACACGACCCTTGCATGAGTTTCGGACATGGTTCAACAC
ATATTGGAGAAAATTTGTATAAAATGACCCTAGATTTGAAAAGACATGGA
TGGGAGGCAGCAGATATGGCCAAACAAATTGAAGTAGCTATTCAGTTATG
GTTACATTACTGGAGGATATGGTCTTGATCGATTCACAATCACAGAAGAA
CAACGTAAAGTCATCAGCGCGTAACAGATATACGAATTGTGACAAATTCA
AAGCTTACTGCAAATATCATTCATCCTTCGAAATCTTTTGTCCAATCACA
TGTGATAAATGTAAAATAGAGACAAAAGATGTTCCCAGTATGACGAGATC
GAAAATTACGACTTCACTACAGGACAAATGAAAGATGAGTACGGCGTTGT
TATTGGACACTTGACTCAACTTTTGTGGGACACAACCGCAGAGGTGGGAT
GCGGTGTGGTGACGGGCCCATCTGGTACTTTTGTCGTCGCAAGATACAGC
CCGGGCGGTAATATCTCCGGAAGATACACACAACATGTTCATCCACTTAT
AAAGGAAGAGAATCACTAAACAGTTGCTTAGCCGCTCATAACGCCAAGCG
AGCCTTACACATCAACACTCCACCTCTACAATACAATGATGCTCTAGCAG
AGAGAGCGCAATGGTATGCTGAATATTTGGAGCTCCAGAATGAGTGGGAA
CACGACCCTTGCATGAGTTTCGGACATGGTTCAACACATATTGGAGAAAA
TTTGTATAAAATGACCCTAGATTTGAAAAGACATGGATGGGAGGCAGCAG
ATATGGCCAAACAAATTGAAGTAGCTATTCAGTTATGGTTACATTACTGG
AGGATATGGTCTTGATCGATTCACAATCACAGAAGAACAACGTAAAGTCA
TCAGCGCGTAACAGATATACGAATTGTGACAAATTCAAAGCTTACTGCAA
ATATCATTCATCCTTCGAAATCTTTTGTCCAATCACATGTGATAAATGTA
AAATAGAGACAAAAGATGTTCCCAGTATGACGAGATCGAAAATTACGACT
TCACTACAGGACAAATGAAAGATGAGTACGGCGTTGTTATTGGACACTTG
ACTCAACTTTTGTGGGACACAACCGCAGAGGTGGGATGCGGTGTGGTGAC
GGGCCCATCTGGTACTTTTGTCGTCGCAAGATACAGCCCGGGCGGTAATA
TCTCCGGAAGATACACACAACATGTTCATCCACTTATAAAGGAAGAGAAT
CACTAAACAGTTGCTTAGCCGCTCATAACGCCAAGCGAGCCTTACACATC
AACACTCCACCTCTACAATACAATGATGCTCTAGCAGAGAGAGCGCAATG
GTATGCTGAATATTTGGAGCTCCAGAATGAGTGGGAACACGACCCTTGCA
TGAGTTTCGGACATGGTTCAACACATATTGGAGAAAATTTGTATAAAATG
ACCCTAGATTTGAAAAGACATGGATGGGAGGCAGCAGATATGGCCAAACA
AATTGAAGTAGCTATTCAGTTATGGTTACATTACTGGAGGATATGGTCTT
GATCGATTCACAATCACAGAAGAACAACGTAAAGTCATCAGCGCGTAACA
GATATACGAATTGTGACAAATTCAAAGCTTACTGCAAATATCATTCATCC
TTCGAAATCTTTTGTCCAATCACATGTGATAAATGTAAAATAGAGACAAA
AGATGTTCCCAGTATGACGAGATCGAAAATTACGACTTCACTACAGGACA
AATGAAAGATGAGTACGGCGTTGTTATTGGACACTTGACTCAACTTTTGT
GGGACACAACCGCAGAGGTGGGATGCGGTGTGGTGACGGGCCCATCTGGT
ACTTTTGTCGTCGCAAGATACAGCCCGGGCGGTAATATCTCCGGAAGATA
CACACAACATGTTCATCCACTTATAAAGGAAGAGAATCACTAAACAGTTG
CTTAGCCGCTCATAACGCCAAGCGAGCCTTACACATCAACACTCCACCTC
TACAATACAATGATGCTCTAGCAGAGAGAGCGCAATGGTATGCTGAATAT
TTGGAGCTCCAGAATGAGTGGGAACACGACCCTTGCATGAGTTTCGGACA
TGGTTCAACACATATTGGAGAAAATTTGTATAAAATGACCCTAGATTTGA
AAAGACATGGATGGGAGGCAGCAGATATGGCCAAACAAATTGAAGTAGCT
ATTCAGTTATGGTTACATTACTGGAGGATATGGTCTTGATCGATTCACAA
TCACAGAAGAACAACGTAAAGTCATCAGCGCGTAACAGATATACGAATTG
TGACAAATTCAAAGCTTACTGCAAATATCATTCATCCTTCGAAATCTTTT
GTCCAATCACATGTGATAAATGTAAAATAGAGACAAAAGATGTTCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012285XLOC_012285Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021895-exon-sc0000396-1575043694:82965..83084TCONS_00021895-exon-sc0000396-1575043694:82965..83084Clytia hemisphaericaexon
TCONS_00021895-exon-sc0000396-1575043694:82508..82576TCONS_00021895-exon-sc0000396-1575043694:82508..82576Clytia hemisphaericaexon
TCONS_00021895-exon-sc0000396-1575043694:81832..82099TCONS_00021895-exon-sc0000396-1575043694:81832..82099Clytia hemisphaericaexon
TCONS_00021895-exon-sc0000396-1575043694:80760..81133TCONS_00021895-exon-sc0000396-1575043694:80760..81133Clytia hemisphaericaexon
TCONS_00021895-exon-sc0000396-1510915933:82965..83084TCONS_00021895-exon-sc0000396-1510915933:82965..83084Clytia hemisphaericaexon
TCONS_00021895-exon-sc0000396-1510915933:82508..82576TCONS_00021895-exon-sc0000396-1510915933:82508..82576Clytia hemisphaericaexon
TCONS_00021895-exon-sc0000396-1510915933:81832..82099TCONS_00021895-exon-sc0000396-1510915933:81832..82099Clytia hemisphaericaexon
TCONS_00021895-exon-sc0000396-1510915933:80760..81133TCONS_00021895-exon-sc0000396-1510915933:80760..81133Clytia hemisphaericaexon
TCONS_00021895-exon-sc0000396-1491911889:82965..83084TCONS_00021895-exon-sc0000396-1491911889:82965..83084Clytia hemisphaericaexon
TCONS_00021895-exon-sc0000396-1491911889:82508..82576TCONS_00021895-exon-sc0000396-1491911889:82508..82576Clytia hemisphaericaexon
TCONS_00021895-exon-sc0000396-1491911889:81832..82099TCONS_00021895-exon-sc0000396-1491911889:81832..82099Clytia hemisphaericaexon
TCONS_00021895-exon-sc0000396-1491911889:80760..81133TCONS_00021895-exon-sc0000396-1491911889:80760..81133Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021895-proteinTCONS_00021895-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000396supercontigsc0000396:80760..83084 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.114076	0.278106	0.322908	0.126366	0.153838	0.364695	0	0.0686521	0.0961299	0.119072	0	0.0379871	0.606949	0.866693	0.550599	0.0695149	0.0856367	0.263325	0	0.190344	0	0	0.0653988	0	0	0	0	0	0.126616	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001283Allrgn_V5/Tpx1
IPR014044CAP_domain
IPR003582ShKT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021895 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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