TCONS_00021903 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021903
Unique NameTCONS_00021903
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length806

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021903 ID=TCONS_00021903|Name=TCONS_00021903|organism=Clytia hemisphaerica|type=transcript|length=806bp
GGAATACATTGTTTGGATTATATATTCTGATCAATATTATGGAGAATAAg
atttacatcctgaagatatTTGTATTTCCTATTATAGATACATATTTCGT
TTCCGGCCatctaaattttaaaagagGCTTCTTATCGGGATGCATGCGAA
TTAGAATAAATTTATCGATTCATTTGCGTGTTAAAGGTGatgcaaaaaca
aaatttcaccCCTTTCTCCAGTTGTCCTACACAGCGTTTTCTATAGAAAA
TATTTCActatcaaaataatcaaaaccaCTTCACATCTATATCCGAAACC
AGCTCGGATAGTAAGTTTtcaataaaatgtaaaatttctcCAATCAATTT
GCCAGTAtgacaaacaaaacaaaagcaatTTTACCTCAATCAATGTCCAT
CGACGAAGGTCCATGGAACACTGTCCGTTCTGCCAGTGGCTCCTTCTCTT
TGCGTCATCGAAAAACACTTCAACTGTCCTTTTATCAGttcaatcaacaa
aaaaaaatattttgacaaaagaaGAGTTTGTTAGGGGTATTAAAACGTGC
CGAGTCAGCAATTCTACAGTGTGACGTCAGTGTTCGGCTCCTTCGTGTTG
TTGTTCGGTGTTTTACGCGTGGAGCgaaatttgattcttttcttTAGCTT
GTTGCTATTGACTGGTAAACAGGACAACAAGACCTGGAAAAAGAACGAAA
AGAAAATGGATGGATAAGTTTTGAGGTCATGGCGATTGAAGCTTTCAATT
ATCGTTCTTGAAGAAAAATGGTAACAATGATAGACTAGCAATGATAGCCC
ACTGGG
Run BLAST on NCBI

transcript from alignment at sc0000396:32457..33262

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021903 ID=TCONS_00021903|Name=TCONS_00021903|organism=Clytia hemisphaerica|type=transcript|length=806bp|location=Sequence derived from alignment at sc0000396:32457..33262 (Clytia hemisphaerica)
CCCAGTGGGCTATCATTGCTAGTCTATCATTGTTACCATTTTTCTTCAAG
AACGATAATTGAAAGCTTCAATCGCCATGACCTCAAAACTTATCCATCCA
TTTTCTTTTCGTTCTTTTTCCAGGTCTTGTTGTCCTGTTTACCAGTCAAT
AGCAACAAGCTAaagaaaagaatcaaatttcGCTCCACGCGTAAAACACC
GAACAACAACACGAAGGAGCCGAACACTGACGTCACACTGTAGAATTGCT
GACTCGGCACGTTTTAATACCCCTAACAAACTCttcttttgtcaaaatat
ttttttttgttgattgaaCTGATAAAAGGACAGTTGAAGTGTTTTTCGAT
GACGCAAAGAGAAGGAGCCACTGGCAGAACGGACAGTGTTCCATGGACCT
TCGTCGATGGACATTGATTGAGGTAAAattgcttttgttttgtttgtcaT
ACTGGCAAATTGATTGgagaaattttacattttattgaAAACTTACTATC
CGAGCTGGTTTCGGATATAGATGTGAAGtggttttgattattttgatagT
GAAATATTTTCTATAGAAAACGCTGTGTAGGACAACTGGAGAAAGGggtg
aaattttgtttttgcatCACCTTTAACACGCAAATGAATCGATAAATTTA
TTCTAATTCGCATGCATCCCGATAAGAAGCctcttttaaaatttagatGG
CCGGAAACGAAATATGTATCTATAATAGGAAATACAAatatcttcaggat
gtaaatcTTATTCTCCATAATATTGATCAGAATATATAATCCAAACAATG
TATTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012290XLOC_012290Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021903-exon-sc0000396-1491911889:32457..33262TCONS_00021903-exon-sc0000396-1491911889:32457..33262Clytia hemisphaericaexon
TCONS_00021903-exon-sc0000396-1510915933:32457..33262TCONS_00021903-exon-sc0000396-1510915933:32457..33262Clytia hemisphaericaexon
TCONS_00021903-exon-sc0000396-1575043694:32457..33262TCONS_00021903-exon-sc0000396-1575043694:32457..33262Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000396supercontigsc0000396:32457..33262 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.8404	21.0939	7.26688	5.99042	11.4601	9.75249	11.0783	14.52	7.16112	8.12585	8.18818	6.2533	6.9165	8.08584	6.71514	7.5323	7.49472	7.40749	2.21102	3.04082	9.13568	10.1733	36.8624	28.8053	7.27364	12.4137	4.15578	3.65248	19.1941	22.8486
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021903 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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