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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021971 ID=TCONS_00021971|Name=TCONS_00021971|organism=Clytia hemisphaerica|type=transcript|length=800bp
CTTAATTGAAAAGAGTTCGTGTTTCCTAGGGTATAAATAGACCTAAGAAC
CTCATCTTAAATATTCATTTTATGGGTAGGTAAAGCGGAGTGTAAGCGAA
AAtgttgttaatatttttcaCTATCACAGCCTTATGTCTTTGCAATGGGC
ATCTCTTGTTTGAAGACCAAAAACGTAGCCCACCTCGGGGCAGAGATGCC
CCCTCTGATGCCCCACCTCTTAGCGGAGATGCATTTAAAGAAAGACTTCT
TAGAGATtaccgaatgaaattacttcaACAACAACGAGATCAACAACAAG
AACACGATGACGAAGTATACTTTAATCACGGTTTCAGAAGGAGAAACGAC
CCATCGGCATCGGCGATTAGACGTCGGTATAAAGATCAAAAAACGGGTCA
ACCATTAAGCGGTGGTCGTAATCAAAAATTGCACCAAGATGAAAACGCCC
GGTACACACTCGAAAAGAAACAACAGGCTAGTTTAGATCAAACGAAAGAA
GAATTAAAACGCAGCCTTTTGAAAGATTTCTACAAAAAAATGATGACAGA
AAAACGGGAAAAACAAGAATTCGCAAAGAAGAGTGATGCACCAGTGAGCG
ATGATTTTGATGATGAAATCCTTCGGCATTTAGTTGAATTCAAATTAAAG
GATCCAATTATGCTTGGGAGAAGAAGAAGATTGTAGATGTTAGATCTGGG
GATATCGAAAAATCAAATTATCTGGAAAATTCGTCATTCGAGTTATCCTA
TTTGCAAAtggaaaaatattcaaaagtttttgtACGAGATTAACATTCAT Run BLAST on NCBI transcript from alignment at sc0000401:228501..231407+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021971 ID=TCONS_00021971|Name=TCONS_00021971|organism=Clytia hemisphaerica|type=transcript|length=2907bp|location=Sequence derived from alignment at sc0000401:228501..231407+ (Clytia hemisphaerica)
CTTAATTGAAAAGAGTTCGTGTTTCCTAGGGTATAAATAGACCTAAGAAC
CTCATCTTAAATATTCATTTTATGGGTAGGTAAAGCGGAGTGTAAGCGAA
AAtgttgttaatatttttcaCTATCACAGCCTTATGTCTTTGCAATGGGC
ATCTCTTGTTTGAAGACCAAAAACGTAGCCCACCTCGGGGCAGAGATGCC
CCCTCTGATGCCCCACCTCTTAGCGGAGATGCATTTAAAGAAAGACTTCT
TAGAGATtaccgaatgaaattacttcaACAACAACGAGATCAACAACAAG
AACACGATGACGAAGTATACTTTAATCACGGTAATGCTTTTCATGCTTAT
ATATACaccttttttctttataagaatacattttataagaatctccatga
tgaaaatggctcaaaaattaagaataatgctaagaatatcaccatcatgg
taTTTTGCtcctcaagctaagaatgccatttttagacattttcaattaaa
aattgtcaattactTAGGCTCGACaatggcttcttcataaagacaaaaga
cagaaatatatttttcgaatCCGGCATTCGGGAATAGCGTCAGGACCTAC
AGGCGACctagtagggttgggtatgggtgtggtttgggtgtggttatgTA
TCAAATTGGCTAGGatttgggttattatcagttagggttatgGTTGGATC
GAATCCCATCTGCCCATCGGTGGCGATCTTTCGCTAAATCATTCAATCAa
ttgaaaaacataaaaaaagctCACTAAGTCCCAGAAAGTTAGAAAAatta
cgaacaagagactggaaaatacgaaataagtccagatatgtctttcgtct
ttatgaaatcctcactgaaaatattcaaataattCTATCCTCACTGctaa
atattatgctatttttcccatcctactgaattttctgacttgaaaacaaa
agaaggcCTGGAAAGCGTCATAACTCGAGTTTTTCGTTACCCAGGTTTTA
TTCATAACTCTATTTCAGGCATCCAGTTAAACAAATGAAATCATTCCGAA
ACTGCATTTATATTatatgttttcaattttgattttatatttaaTCATTT
CCCTAAAATGTTGTTTGCTTCTCGAAATGGAGCACCTTTAAAGCTCTAGG
TAGCAAAGTGTAttcatataaataaaagttcGCGAATCAACATCTCAAGT
CTGACGGGTATAAATTTTAAGAGATATAATTTAATGAAtaatttcaagtc
aaatttcTGAATGGGCTTCGGGAGGAGAAACGATCCATCTGAATACAAAA
CACGCCGACGAAATGAAAACGACCCGAATACACTAGAAAAGAAACAACAG
GCTAGTTTAGACCAAACCAAAGAACGATTAAAACGCAGCCTTTAGAAAGA
TTTCTACAAGTGTGAAAGTGTAATGAAATTTCGACTAATTTCAACAATCC
CTTCTTTCATAGGTTTCAGAAGGAGAAACGACCCATCGGCATCGGCGATT
AGACGTCGGTATAAAGATCAAAAAACGGGTCAACCATTAAGCGGTGGTCG
TAATCAAAAATTGCACCAAGATGAAAACGCCCGGTACACACTCGAAAAGA
AACAACAGGCTAGTTTAGATCAAACGAAAGAAGAATTAAAACGCAGCCTT
TTGAAAGATTTCTACAAAAAAATGATGACAGAAAAACGGGAAAAACAAGA
ATTCGCAAAGAAGAGTGATGCACCAGTGAGCGATGATTTTGATGATGAAA
TCCTTCGGCATTTAGGTAGGTGATTGGTTCTAATTtaattaaagggataa
tcagtgaaaatcgtaaattttactgcaaaatttgttgtaaaaatctgtca
aaaaactctaagggataatcagatggtttaaGATTCTTCCTATAATCCTG
AGGGAAACCTTCAAATCCTTTTTTGTGTAACTCTTCCAAAGCCCTTAGGG
GACTTTCAAAAAAcctgggggtactagggttggcggatgaggggtatgtg
cgaaaaattaagaacaatttaagaacaatcatGAGGCCTGAAaatactca
atttcaagcaatttatggaaaatattgtaaaaattaattacaccctataa
ataagaaaagtATAAGAACAATTGGAGGCTCAAAGcgacaaaaaaataag
aacagaggagcctcagcaaaatttaaattgttctaataaaaaaactgtAA
ACTTGTTCTTTTAAAAGCGAATGTTTCTGGTTTATGAAGCTTATTTCAAA
TCTCTCTAAAAAGTAGCTTTTAAAAataggctcttccagaaaaaaaattt
aatatggggggaaacattttttgaaaatttactccCGTACATTGTGAATT
ATGACCCCCGGCCAACACATCTCACCCCcgaacaagcatcagttgacccg
gaaattcaaaatttcccctaaacagagcaagttttCCCCCAAAACAAgac
aaattttgcagatttttcagaatttNACcctaaacagagcaagtttcCCC
CAAAACAAgacaaattttgcagatttttcagaattttttatcCTCTACCC
CGTGTACAAAAGTTTTCTGAAAGAGCCCAATATAAGTATTTAATGTGCCA
CACCAATACCAGGTTTAAACCAGGATTTTTAAATATGTACAGAAGTGGGT
TGTTGGATCTTGACGAAATTTGTCACATTACCATTtttacaaaacaaaga
aaatacagcaatagtttaatttttctattttttttaacagTTGAATTCAA
ATTAAAGGATCCAATTATGCTTGGGAGAAGAAGAAGATTGTAGATGTTAG
ATCTGGGGATATCGAAAAATCAAATTATCTGGAAAATTCGTCATTCGAGT
TATCCTATTTGCAAAtggaaaaatattcaaaagtttttgtACGAGATTAA
CATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021971-exon-sc0000401-1491911889:228501..228830 | TCONS_00021971-exon-sc0000401-1491911889:228501..228830 | Clytia hemisphaerica | exon |
| TCONS_00021971-exon-sc0000401-1510915933:228501..228830 | TCONS_00021971-exon-sc0000401-1510915933:228501..228830 | Clytia hemisphaerica | exon |
| TCONS_00021971-exon-sc0000401-1575043694:228501..228830 | TCONS_00021971-exon-sc0000401-1575043694:228501..228830 | Clytia hemisphaerica | exon |
| TCONS_00021971-exon-sc0000401-1491911889:229963..230265 | TCONS_00021971-exon-sc0000401-1491911889:229963..230265 | Clytia hemisphaerica | exon |
| TCONS_00021971-exon-sc0000401-1510915933:229963..230265 | TCONS_00021971-exon-sc0000401-1510915933:229963..230265 | Clytia hemisphaerica | exon |
| TCONS_00021971-exon-sc0000401-1575043694:229963..230265 | TCONS_00021971-exon-sc0000401-1575043694:229963..230265 | Clytia hemisphaerica | exon |
| TCONS_00021971-exon-sc0000401-1491911889:231241..231407 | TCONS_00021971-exon-sc0000401-1491911889:231241..231407 | Clytia hemisphaerica | exon |
| TCONS_00021971-exon-sc0000401-1510915933:231241..231407 | TCONS_00021971-exon-sc0000401-1510915933:231241..231407 | Clytia hemisphaerica | exon |
| TCONS_00021971-exon-sc0000401-1575043694:231241..231407 | TCONS_00021971-exon-sc0000401-1575043694:231241..231407 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000401 | supercontig | sc0000401:228501..231407 + |
Blast
The following BLAST results are available for this feature:
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