TCONS_00022097 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022097
Unique NameTCONS_00022097
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022097 ID=TCONS_00022097|Name=TCONS_00022097|organism=Clytia hemisphaerica|type=transcript|length=384bp
AAAAGATGTTTCAGCCATATAGAAATTTGAACCTGCTAGTAAAGCGTTGT
TTTACATCATCTGTCACTCGGCTAGCATATAGAGATGTTACCAAAGATCA
CCCGGTTATTGTTGGATCAAAACAACTCAGAAAACTGTTACAGGTGAAga
gcttttttaaaacatatgCTATTAAATATGAAAAGTCAAGCAAATGGTTT
TGAGAatgtattttcaaagacaaattATAGAcgagttgttttttttattt
actgtTGCTCTGCTTGGAAATGGTGTTGTTGGAAATAATTGTTAGAGTTG
ATAAATATTTGGCTATTGACAGCTAGACATATTTTAAAGCTTGGTGCTCA
CTGAAaaataataccttaagggaagaaatttttg
Run BLAST on NCBI

transcript from alignment at sc0000405:163390..163773+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022097 ID=TCONS_00022097|Name=TCONS_00022097|organism=Clytia hemisphaerica|type=transcript|length=384bp|location=Sequence derived from alignment at sc0000405:163390..163773+ (Clytia hemisphaerica)
AAAAGATGTTTCAGCCATATAGAAATTTGAACCTGCTAGTAAAGCGTTGT
TTTACATCATCTGTCACTCGGCTAGCATATAGAGATGTTACCAAAGATCA
CCCGGTTATTGTTGGATCAAAACAACTCAGAAAACTGTTACAGGTGAAga
gcttttttaaaacatatgCTATTAAATATGAAAAGTCAAGCAAATGGTTT
TGAGAatgtattttcaaagacaaattATAGAcgagttgttttttttattt
actgtTGCTCTGCTTGGAAATGGTGTTGTTGGAAATAATTGTTAGAGTTG
ATAAATATTTGGCTATTGACAGCTAGACATATTTTAAAGCTTGGTGCTCA
CTGAAaaataataccttaagggaagaaatttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012392XLOC_012392Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022097-exon-sc0000405-1491911889:163390..163773TCONS_00022097-exon-sc0000405-1491911889:163390..163773Clytia hemisphaericaexon
TCONS_00022097-exon-sc0000405-1510915933:163390..163773TCONS_00022097-exon-sc0000405-1510915933:163390..163773Clytia hemisphaericaexon
TCONS_00022097-exon-sc0000405-1575043694:163390..163773TCONS_00022097-exon-sc0000405-1575043694:163390..163773Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000405supercontigsc0000405:163390..163773 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.527188	1.60347	0.607222	1.71282	0	0	0	0.244009	1.07641	0.569605	0.732666	1.38454	1.62822	2.15124	2.0847	1.51352	3.29747	3.87434	5.49813	1.70115	3.06061	2.20244	1.51157	2.04838	0	0.388517	0.738722	0.549276	4.24698	1.90889
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022097 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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