TCONS_00022136 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022136
Unique NameTCONS_00022136
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length379

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022136 ID=TCONS_00022136|Name=TCONS_00022136|organism=Clytia hemisphaerica|type=transcript|length=379bp
ACCCTCCCCCCCGGGGTAGTTACTTTTCTTGACTTTCAATAGAtttatct
taaaatatttttcttactcAAGTatttacacacttttttataagaatatt
taggTTGAAGCTTTCGCAACTGCAGTAATTCGTTTTCGTTCCCAACTTTA
AATTAGAGCAGATTGAGGGTGAGTTTTTATAAACCCAAGTTGAATTTATA
TATCTATTTAAATGAATTAATTTCAAGAAAGCCAATTAGAATATTTTAGG
CTTTAAATTGTCCAAAATTTAAGCCCATTCTTATAATACACATGTTTTAT
ACAGCGTTTTTGAGGTTGCCATCTCCCAATGTATGATAGtttgattacac
gtttttttctataataaggcgagaccaac
Run BLAST on NCBI

transcript from alignment at sc0000405:227097..227475

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022136 ID=TCONS_00022136|Name=TCONS_00022136|organism=Clytia hemisphaerica|type=transcript|length=379bp|location=Sequence derived from alignment at sc0000405:227097..227475 (Clytia hemisphaerica)
gttggtctcgccttattatagaaaaaaacgtgtaatcaaaCTATCATACA
TTGGGAGATGGCAACCTCAAAAACGCTGTATAAAACATGTGTATTATAAG
AATGGGCTTAAATTTTGGACAATTTAAAGCCTAAAATATTCTAATTGGCT
TTCTTGAAATTAATTCATTTAAATAGATATATAAATTCAACTTGGGTTTA
TAAAAACTCACCCTCAATCTGCTCTAATTTAAAGTTGGGAACGAAAACGA
ATTACTGCAGTTGCGAAAGCTTCAAcctaaatattcttataaaaaagtgt
gtaaatACTTgagtaagaaaaatattttaagataaaTCTATTGAAAGTCA
AGAAAAGTAACTACCCCGGGGGGGAGGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012415XLOC_012415Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022136-exon-sc0000405-1491911889:227097..227475TCONS_00022136-exon-sc0000405-1491911889:227097..227475Clytia hemisphaericaexon
TCONS_00022136-exon-sc0000405-1510915933:227097..227475TCONS_00022136-exon-sc0000405-1510915933:227097..227475Clytia hemisphaericaexon
TCONS_00022136-exon-sc0000405-1575043694:227097..227475TCONS_00022136-exon-sc0000405-1575043694:227097..227475Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000405supercontigsc0000405:227097..227475 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.208693	0.203508	0.472585	0	0.281434	0	1.07323	0	0.527584	0	0.422867	0.416964	1.66554	0.720699	2.25155	2.41626	1.40998	0.481729	7.76457	5.10718	0.605328	0.885773	1.19641	0.435086	0.448128	0	0.286159	0.610793	4.40102	3.30396
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022136 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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