TCONS_00022164 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022164
Unique NameTCONS_00022164
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1611

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022164 ID=TCONS_00022164|Name=TCONS_00022164|organism=Clytia hemisphaerica|type=transcript|length=1611bp
GAAAATCTATCCGCTTTAAGTGCTCTACGTGAAatatgaaaacgaaagtg
tatTTTAACATACCTGCGCATAAGATCTCATGGAATCGACAATTTCTTGG
AAAAAAGATGGCGATGGCAGGATTGACCAAAAGTTCGAAATGTGtcccaa
aatttggaaaaatcgcTAATTTCAGAGTGATTTCACAAAGCTATTCGGTG
AATACAGTTCAAAACGTTGATGTAGAACTTATTGAAACtgctgaaaaagt
tgaaaagggagTTCCTTTCTTGTTTTTACCTCACACTGTCAAGAAAGCTT
ACAATGTTAAAAGTGGGGTGACAACATCTTTGCCAcaagtttttgataaa
tataaatGGCTGACAAAGACTCTTTCTTCACCGAATATACCTGAAGATAT
CTTATCAAATAATGAATCAAATTTTGACGAGTTTAAGCTTTTATTACATG
ATTCATTGGCGCAAACCACAGCTTTCCAAAAAACGCCAAAAAACAAAGAT
GACAAACGATTCCGCCAAGAGAGGATGGTAAACGGGATATTTTCAAACTT
CTTACGCTTATCCATGGTCAAAAACAACTCTAAAGCTCATTTAAAACCTG
GAAACTTTTATCTTCTCAATAAAACACAACTTGAAAGCCATTGGGTTCGA
AATTACAAGTTTTATCAGACCCAAATTCGCCCTACCTACACTTTGAAGAC
CCAAAATCCACTTGCCATTATTGAAGAACCAAATGAGATTCACCCGTTAG
ACATCGAGAGGATACCCGGACCGTTTGATCCTTACGCAATGAATTTGTAC
CGACATCCAGTAGTTCATTTGACCAGTAGACCAGCATTGGATAATTCACG
TTATTCACAATACCACCATTGTCATACCTCAATCGCTATCAACAATAGAT
TGCGAACGGATGAGCAGATCTACTCGCTTGGTATGTTCACCATGTTTGCA
CAACTTTCTGCGCAGGCGCAAGCGAATGGTGTTCTCCAGGGGACCAATCT
AGATCAACCTTTAGTCACGCAATGTATCGTCTCTAACGGACATCTGATCA
GCTTCATGATGTATCAACTGAACACTTTGAACATGTTGACGGATAAGGGT
GTATGGAACCGATGTTGGTACACACCATCTATTGGAATGTTTGAACAAAA
CAATGAAGCAAGCCATGGACGAATTTACGAAGAAGCTTTACCACAAGACA
TTTTGGAGGGCTTTAATGACGAATTACCGAAACATTTTCATGCTTTTATT
GGTAATGAAACTGTTTAGATGTGCTTTTTGagatatacacgctttttttt
ttataagaatagtgtactttggttgagggtaagcattattcttatttttc
tattattctaaacaataggcctattgttttaaacccgaaatctcaccctg
atattcttatagacgttattcttataaaaaaaaaagcgtgtaagtaGGAT
TTTTTTGTTAGGTATGTTTATAACGATTAGAAAATAGTGCTTACTTATGG
AACTTTAACCCGATTACGTAATTTCAGCTCTATTATCACAATTTAAAGCT
TTTATTGAATTGCTACTTTTTTTACCATCGTGGAAACaaatcgaaaataa
tgaattccAAA
Run BLAST on NCBI

protein sequence of TCONS_00022164-protein

>TCONS_00022164-protein ID=TCONS_00022164-protein|Name=TCONS_00022164-protein|organism=Clytia hemisphaerica|type=polypeptide|length=410bp
MKTKVYFNIPAHKISWNRQFLGKKMAMAGLTKSSKCVPKFGKIANFRVIS
QSYSVNTVQNVDVELIETAEKVEKGVPFLFLPHTVKKAYNVKSGVTTSLP
QVFDKYKWLTKTLSSPNIPEDILSNNESNFDEFKLLLHDSLAQTTAFQKT
PKNKDDKRFRQERMVNGIFSNFLRLSMVKNNSKAHLKPGNFYLLNKTQLE
SHWVRNYKFYQTQIRPTYTLKTQNPLAIIEEPNEIHPLDIERIPGPFDPY
AMNLYRHPVVHLTSRPALDNSRYSQYHHCHTSIAINNRLRTDEQIYSLGM
FTMFAQLSAQAQANGVLQGTNLDQPLVTQCIVSNGHLISFMMYQLNTLNM
LTDKGVWNRCWYTPSIGMFEQNNEASHGRIYEEALPQDILEGFNDELPKH
FHAFIGNETV
Run BLAST on NCBI

transcript from alignment at sc0000406:265086..268882+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022164 ID=TCONS_00022164|Name=TCONS_00022164|organism=Clytia hemisphaerica|type=transcript|length=3797bp|location=Sequence derived from alignment at sc0000406:265086..268882+ (Clytia hemisphaerica)
GAAAATCTATCCGCTTTAAGTGCTCTACGTGAAatatgaaaacgaaagtg
tatTTTAACATACCTGCGCATAAGATCTCATGGAATCGACAATTTCTTGG
AAAAAAGATGGCGATGGCAGGATTGACCAAAAGTTCGAAATGTGtcccaa
aatttggaaaaatcgcTAATTTCAGAGTGATTTCACAAAGCTATTCGGTG
AATACAGTTCAAAACGTTGATGTAGAACTTATTGAAACtgctgaaaaagt
tgaaaagggagTTCCTTTCTTGTTTTTACCTCACACTGTCAAGAAAGCTT
ACAATGTTAAAAGTGGGGTGACAACATCTTTGCCAcaagtttttgataaa
tataaatGGCTGACAAAGACTCTTTCTTCACCGAATATACCTGAAGATAT
CTTATCAAATAATGAATCAAATTTTGACGAGTTTAAGCTTTTATTACATG
ATTCATTGGCGCAAACCACAGCTTTCCAAAAAACGCCAAAAAACAAAGAT
GACAAACGATTCCGCCAAGAGAGGATGGTAAACGGGATATTTTCAAACTT
CTTACGCTTATCCATGGTCAAAAACAACTCTAAAGCTCATTTAAAACCTG
GAAACTTTTATCTTCTCAATAAAACACAACTTGAAAGCCATTGGGTTCGA
AATTACAAGTTTTATCAGACCCAAATTCGCCCTACCTACACTTTGAAGAC
CCAAAATCCACTTGCCATTATTGAAGAACCAAATGGTAAGCTTattattg
atctctttatgttagGTTAATAAATATTCACAAATTTTAGCGTCAATTGA
ATAGGCTTGACTCAGTTCTgcataccgtgaagtcgggtccGCTAAGTCTg
agaattaatttttcgaaaattttccacccaggacattcttattccaactc
ccccgcttattaatttttgggaaaatgattttgaaagttccctcttttgt
cctaattctgctgtatcagcctccttttcaaaagttttccNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
GGATTTTTTCCTGgggcataagcatcctatagagaaggtctggagaaagc
ttcagctatatattatttttttcctgtaaattatgctaaacgaccccact
aatAGTGTTgtgagtaaacacaagattttccatatctttttgaaaaaact
tttttctaatctCATGTGGCTATCCTGAAAAAAAACTCGTAAAAGTTGGT
ATGATTCTCTTGCAAAACGACAGCAGCTTCCAACAGAAGCGgctaattga
ttgatttattttaCTGCAAGCTGATATGCTAGCTATTCTCAATTTGcctt
ctctttttctttcattaaCAGAGATTCACCCGTTAGACATCGAGAGGATA
CCCGGACCGTTTGATCCTTACGCAATGAATTTGTACCGACATCCAGTAGT
TCATTTGACCAGTAGACCAGCATTGGATAATTCACGTTATTCACAATACC
ACCATTGTCATACCTCAATCGCTATCAACAATAGATTGCGAACGGATGAG
CAGATCTACTCGCTTGGTATGTTCACCATGTTTGCACAACTTTCTGCGCA
GGCGCAAGCGAATGGTGTTCTCCAGGGGACCAATCTAGATCAACCTTTAG
TCACGCAATGTATCGTCTCTAACGGACATCTGATCAGCTTCATGATGTAT
CAACTGAACACTTTGAACATGTTGACGGATAAGGGTGTATGGAACCGATG
TTGGTACACACCATCTATTGGAATGTTTGAACAAAACAATGAAGCAAGCC
ATGGACGAATTTACGAAGAAGCTTTACCACAAGACATTTTGGAGGGCTTT
AATGACGAATTACCGAAACATTTTCATGCTTTTATTGGTAATGAAACTGT
TTAGATGTGCTTTTTGagatatacacgcttttttttttataagaatagtg
tactttggttgagggtaagcattattcttatttttctattattctaaaca
ataggcctattgttttaaacccgaaatctcaccctgatattcttatagac
gttattcttataaaaaaaaaagcgtgtaagtaGGATTTTTTTGTTAGGTA
TGTTTATAACGATTAGAAAATAGTGCTTACTTATGGAACTTTAACCCGAT
TACGTAATTTCAGCTCTATTATCACAATTTAAAGCTTTTATTGAATTGCT
ACTTTTTTTACCATCGTGGAAACaaatcgaaaataatgaattccAAA

Coding sequence (CDS) from alignment at sc0000406:265086..268882+

>TCONS_00022164 ID=TCONS_00022164|Name=TCONS_00022164|organism=Clytia hemisphaerica|type=CDS|length=2466bp|location=Sequence derived from alignment at sc0000406:265086..268882+ (Clytia hemisphaerica)
atgaaaacgaaagtgtatTTTAACATACCTGCGCATAAGATCTCATGGAA
TCGACAATTTCTTGGAAAAAAGATGGCGATGGCAGGATTGACCAAAAGTT
CGAAATGTGtcccaaaatttggaaaaatcgcTAATTTCAGAGTGATTTCA
CAAAGCTATTCGGTGAATACAGTTCAAAACGTTGATGTAGAACTTATTGA
AACtgctgaaaaagttgaaaagggagTTCCTTTCTTGTTTTTACCTCACA
CTGTCAAGAAAGCTTACAATGTTAAAAGTGGGGTGACAACATCTTTGCCA
caagtttttgataaatataaatGGCTGACAAAGACTCTTTCTTCACCGAA
TATACCTGAAGATATCTTATCAAATAATGAATCAAATTTTGACGAGTTTA
AGCTTTTATTACATGATTCATTGGCGCAAACCACAGCTTTCCAAAAAACG
CCAAAAAACAAAGATGACAAACGATTCCGCCAAGAGAGGATGGTAAACGG
GATATTTTCAAACTTCTTACGCTTATCCATGGTCAAAAACAACTCTAAAG
CTCATTTAAAACCTGGAAACTTTTATCTTCTCAATAAAACACAACTTGAA
AGCCATTGGGTTCGAAATTACAAGTTTTATCAGACCCAAATTCGCCCTAC
CTACACTTTGAAGACCCAAAATCCACTTGCCATTATTGAAGAACCAAATG
AGATTCACCCGTTAGACATCGAGAGGATACCCGGACCGTTTGATCCTTAC
GCAATGAATTTGTACCGACATCCAGTAGTTCATTTGACCAGTAGACCAGC
ATTGGATAATTCACGTTATTCACAATACCACCATTGTCATACCTCAATCG
CTATCAACAATAGATTGCGAACGGATGAGCAGATCTACTCGCTTGGTATG
TTCACCATGTTTGCACAACTTTCTGCGCAGGCGCAAGCGAATGGTGTTCT
CCAGGGGACCAATCTAGATCAACCTTTAGTCACGCAATGTATCGTCTCTA
ACGGACATCTGATCAGCTTCATGATGTATCAACTGAACACTTTGAACATG
TTGACGGATAAGGGTGTATGGAACCGATGTTGGTACACACCATCTATTGG
AATGTTTGAACAAAACAATGAAGCAAGCCATGGACGAATTTACGAAGAAG
CTTTACCACAAGACATTTTGGAGGGCTTTAATGACGAATTACCGAAACAT
TTTCATGCTTTTATTGGTAATGAAACTGTTTAGatgaaaacgaaagtgta
tTTTAACATACCTGCGCATAAGATCTCATGGAATCGACAATTTCTTGGAA
AAAAGATGGCGATGGCAGGATTGACCAAAAGTTCGAAATGTGtcccaaaa
tttggaaaaatcgcTAATTTCAGAGTGATTTCACAAAGCTATTCGGTGAA
TACAGTTCAAAACGTTGATGTAGAACTTATTGAAACtgctgaaaaagttg
aaaagggagTTCCTTTCTTGTTTTTACCTCACACTGTCAAGAAAGCTTAC
AATGTTAAAAGTGGGGTGACAACATCTTTGCCAcaagtttttgataaata
taaatGGCTGACAAAGACTCTTTCTTCACCGAATATACCTGAAGATATCT
TATCAAATAATGAATCAAATTTTGACGAGTTTAAGCTTTTATTACATGAT
TCATTGGCGCAAACCACAGCTTTCCAAAAAACGCCAAAAAACAAAGATGA
CAAACGATTCCGCCAAGAGAGGATGGTAAACGGGATATTTTCAAACTTCT
TACGCTTATCCATGGTCAAAAACAACTCTAAAGCTCATTTAAAACCTGGA
AACTTTTATCTTCTCAATAAAACACAACTTGAAAGCCATTGGGTTCGAAA
TTACAAGTTTTATCAGACCCAAATTCGCCCTACCTACACTTTGAAGACCC
AAAATCCACTTGCCATTATTGAAGAACCAAATGAGATTCACCCGTTAGAC
ATCGAGAGGATACCCGGACCGTTTGATCCTTACGCAATGAATTTGTACCG
ACATCCAGTAGTTCATTTGACCAGTAGACCAGCATTGGATAATTCACGTT
ATTCACAATACCACCATTGTCATACCTCAATCGCTATCAACAATAGATTG
CGAACGGATGAGCAGATCTACTCGCTTGGTATGTTCACCATGTTTGCACA
ACTTTCTGCGCAGGCGCAAGCGAATGGTGTTCTCCAGGGGACCAATCTAG
ATCAACCTTTAGTCACGCAATGTATCGTCTCTAACGGACATCTGATCAGC
TTCATGATGTATCAACTGAACACTTTGAACATGTTGACGGATAAGGGTGT
ATGGAACCGATGTTGGTACACACCATCTATTGGAATGTTTGAACAAAACA
ATGAAGCAAGCCATGGACGAATTTACGAAGAAGCTTTACCACAAGACATT
TTGGAGGGCTTTAATGACGAATTACCGAAACATTTTCATGCTTTTATTGG
TAATGAAACTGTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012429XLOC_012429Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022164-proteinTCONS_00022164-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022164-exon-sc0000406-1491911889:265086..265820TCONS_00022164-exon-sc0000406-1491911889:265086..265820Clytia hemisphaericaexon
TCONS_00022164-exon-sc0000406-1510915933:265086..265820TCONS_00022164-exon-sc0000406-1510915933:265086..265820Clytia hemisphaericaexon
TCONS_00022164-exon-sc0000406-1575043694:265086..265820TCONS_00022164-exon-sc0000406-1575043694:265086..265820Clytia hemisphaericaexon
TCONS_00022164-exon-sc0000406-1491911889:268007..268882TCONS_00022164-exon-sc0000406-1491911889:268007..268882Clytia hemisphaericaexon
TCONS_00022164-exon-sc0000406-1510915933:268007..268882TCONS_00022164-exon-sc0000406-1510915933:268007..268882Clytia hemisphaericaexon
TCONS_00022164-exon-sc0000406-1575043694:268007..268882TCONS_00022164-exon-sc0000406-1575043694:268007..268882Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000406supercontigsc0000406:265086..268882 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
40.5073	41.8058	29.7873	29.6109	19.9343	14.094	16.8452	17.6951	18.2862	19.3412	20.2083	15.0013	23.2725	24.6743	23.7791	25.0882	30.4772	33.03	11.4508	8.98505	19.6887	19.6685	27.5671	23.807	33.6472	36.9865	13.7753	10.988	16.1751	17.6585
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010793Ribosomal_L37/S30
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022164 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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