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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022169 ID=TCONS_00022169|Name=TCONS_00022169|organism=Clytia hemisphaerica|type=transcript|length=2059bp
CACAGCTATGCACGAATTCCagGTCGATGGTTTACTTTTTTACCACAATC
AATGTCATTACACACCTGGCAGAACTCCGTTGGTTGGTTGGCTCAAACCC
TTCATGTTACCAGAAATTCTAAACATACAACTTCCATCGAGTTATCTCGA
TTCCGATCAAAATATCGATTTCAATCGGACAATTCTAAAAGCGGCAAATG
AAGATTTACAAAAAACATCGAGTGATCGATCGATTTATAAATCGAAACTG
AACTCATCGATAACATCGAATGAATCGAAAAATGAATCGAATATGGAAAC
GTAGCAATGGAGTGTTTGATAGTATCGATTAATTCTAATCAATCCATTGA
TAGTGAAGCAGAAGAGGTGAATATTATTGCATGTTCAAATTGCTTTAACC
AATGATTACCGAAGCTATAATGAGTGAAATGCTGAAAGTTCATTTATGAG
tcgaacaaaaacaaaagaatgaacaaaTGTCCGAAAGAGTGAGGTTTTCG
AGCGACATCCCGAAAAGTTTAGACTTTTAAGATATGTAATTTACTTTCTA
CCTACTTTCTCTACCACGACAACGTGATGGGTGTATGAGGAGCCTGGTGT
TCGTTAGCAATCATTGAACTTCCAAAATTGTCGAGTCTTTCAGCATATCA
TTTTGGAAATCTACCTTACACAGAACTTTTTTATAactgtattttttaaa
tatatttcttttgatttttaagaatatttattttACAAGAGGAATGAAAA
TTATCTGATAGTTCGATGGGTGGTGGATGGGTGGTGTCTAACAAATGTCT
GTAATAATGTTAAAGTAAAACTTCCACGTCGCCTCGTTTCGACAGTCTTG
CAGCAAAGAATTCGCTTCGCATTTCGTAATTTCAACTTCAAAGCCTGACG
AATCTTGCGGACGTAAAAAATATAGAATAAAGCATCCGACGAATAACCAG
CACaatagaaaatattgaaaactaAAGTCACCCATGTTGGTATATCATTG
CCAGACATTTCCAGTCCAAAATAGATTAATATATAAACCAGATTAATCAA
AGTCCAACATATCAGATATGAGAAAACAATCAATTTCGGTAGCAAGGTCA
CTTTCTTCATTCTACGTTTATATCTGCTTGATTGCGCGTGTAGTAAATCT
CGACTCCGACGTTCTATTGTTTTGACAATCGAATAATAACAAGCAATGAA
CGATGTCAGAATCAAAACATCCGAGGATGGCCAGAAATACAACATTGTTA
CCAAACCGAAACGTTGAGGAGTTCTTTGCGTAAAATACAACACCATAGCG
ACGATTATTGAAACCGAGACATTAAAAACGAATACAAAATTAGTGACGTA
ATCCACTTTTCTCGATTCGTATCGGATATTTAATCGAACGAAAATTGCTC
GATCAATTGTCATTGAAACTAAGATCAATGTTATCATGGTTCCAAAGAAA
CCTGTTACCATGACACTAACACCAAAAGTAACACTACCGTAATGTGCAAC
CAGGGGGTACACAATATCATGACATATTAAGACTAATTCGGTGAAACTCA
ACCATAACAAATATCGTTTCTGTATTCTTTGCCAGAGTGTTTTGAAATGG
ACGATAAATAATAAGTATATACCAAGCAGGTGACAGACGAGCGGTATAGA
GTatgttaaaatgaaaattacagTCTTCAAGTCACTGGTCATGTTTCTCT
TGTGTGATCTATTCAAGTCTATATAAATTCTTTCGAGTATTCTTTGCTAC
GATGAAACGATAAAGCTTTTTGGAAAGATTATATGACCTTCTCTCATTTG
ATTAAGTTCGTCTGTAGACAGACTTTGTACTATCTATCTCTATCCAATAA
ATCAGCTATTGTGCATAGTaagaaaattccaaaatgtcTGTCTGTCCAGC
CAATTTGTCTTATATTGATTTAATTACGCGATaacaaaaattcaaagtat
TTCTGACTTCAATTACCCTTCCATTTTAAGTAAAGTTTAATACTATTCCC
CGTGAAATAATTCCTGATCAGATCGCTTAGAGTTTTTTAATTCTCTAGTA
AGTGTTTAT Run BLAST on NCBI transcript from alignment at sc0000406:251361..256452- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022169 ID=TCONS_00022169|Name=TCONS_00022169|organism=Clytia hemisphaerica|type=transcript|length=5092bp|location=Sequence derived from alignment at sc0000406:251361..256452- (Clytia hemisphaerica)
CACAGCTATGCACGAATTCCAGGTATTATTATTATTATTTCTAAGCGCAA
TTCATAACCAAAATACGTGATGGGAAAGGCATTAAAATTAAAGACCATAT
GGAAAGTTCCCAACCTCCAAATTAAATATTAACGAATTGCCCATTCCCCA
CGAGTCAAAAATTATGAATTCAAATCCAATTTTCAAAATTAGCAACAACA
ACTCGAACAATTGTTAACTTGATATCAAAAAACTTAGATGAGATACATGA
AAAAGGGAAAGTGGAATTAAGAAAATGATAGCTGTACAATATAAGATTTA
AATTTTTAATAAATAATTTGACAAAGGAAGATAATAAAAATATTATTGTT
GATTATATACAATGTGTTCCATGGTGAAGAAAAGGACCTTTAACAGAATG
TGTTTTCGTTGGAGCATTTGCGTGACTTTTTCCAGAATTGCATTGGAGTA
GAAATTTGTCTATTGTTGGCTTGGTTACGTCGTTTTTCGACACCTTTGGT
GTGTTCTCTATCGTCCATTTTTCGGTCACGGTTGTTACTCCGTCCGTCAC
ATTTCTGTTGTCTGTTACCGTTCATTTCTCTGGCGCACGTGTTCTTCTGT
TCGGTCCAGGCCCCTTGCTTGTTGGATCCATTCTTCACTATCTTCATCTT
TCGTCCGAAAGTTTTCCTTTCAGTCATTTTTCGGTCTCGGTTCAATTTCT
CATCTACCATTTTTGATTTCTTGGTGCTCTCTACACAAACTTGTTCTTCT
AGTTTCCGTTTCTTTTGATTCTCGGTCGCTTCTTGACGAAGTGTGGAAAT
CATGTCACTAATTTCTTGAGGAATCTTTTCATCTGTAGCAGACGAACTAA
GAGCACTTTTACCGGAGCAATCCAAGTACCCGGTAAGCTCTATCTCGTAT
ATCTTCACGCTTGGAACGAGTTTTTCTTTTAAAGAAACGAGATCTTCATT
TTCGCAGATTTGTACAGTTTGTTTTTCTTTTAAAGAAACACAATCCTCGT
CTTGGCAGATTTGTACCGTTGGTTCCTTTAACTGTTCGGGAAGTTCTTCT
CCACCACCAGCACCCTTTCGTTGGCATGATTTGGAGTCGTCAAACACCGA
CAATTCACCGAAAGCAAACGACAAACGATCGATTTCAGGCGAAGGTTCTT
TGTACATCGAATCTTGACTGTCGTTTATTTTCTCCAGAAATTCGAGGAAT
TGTTTTGGGTTATAATTCACCTGAGATTCAATAACCTTTGATTCTGTTGA
TTTATCCAACGAGGAAGACTTCTGAACTTTATTTTTGTTCATGCGATGTT
TTTTAAGGTCGTTGAGATAAGGGTGGTATATTTTTGCAGTCTGTTTCTTT
GTCAAGAAGAAAGCTTGTAACTTGGGTTTCGAAGAATTCTTCAATTTGTT
TTGAACGAGGGATGGAACATTGGAATGGCGATACATTCGATATTGAACCT
GACCAATCATCAAACTCGTTGAGAAACCTTCTTCGCAATCAAAAAAGTCC
ATATTTTCCCTGATCATCGCAAAATCAGCTGATCCGGAACTCATCAGGAT
ATGGAGATTTTCCATTTTGAAAACCAATTTCTGGAATTCCAGCATTGACT
GTAGATAACATTCTGTTATCATTGGTTTGCTACAAACAACCATCTTGTAT
TTCCAATTTTCTTTCACAATATTATAACGATTCAATAACAATTCTCTTAG
AGCGCACTTACTCTAAGCAAAAGAGAATTCAAATAATTTGAATGCAAACT
TTCTTTAAAAATCGAAGTTGAGATATTGCTTGGAAAAGATATTTGACGTC
AAAAAAAAAATTCGATATTGACGTCAATTGCTTATAAAGGTTTCGAACCC
GAACGGTAAAACTTCTTTGTTCGAACTATAATGAAATTCGAATTATAGTA
AGTTTTTTGAGGTGGTTTCCCCTTGACGGGGACTTGAAACAAGTTCGAAC
TATAGAAAGATTCCAATGAGCGGCAGTTTAATGTACTTAAGAGGAGGGTA
TGGATTGAAGCTAGACTGGGCCTCCTTGAAGATGAATTTTTTGCCCTAAG
GAAGGTTATCTAAACGAAAAATTTTCTTTTCAGAAATACACGCTTTTTTT
TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCTAAATTCCATGATGGTGATATTCTTACCATATTCTTAATTTTTTGGC
CATTTTCATCATGGACATTCTTATAAAGTGTATTCTTATATAAAAAAAAG
CGTGTAAGAGAAAATATTTCTCTGAGCGCGTTAATTTTTTCCCGTAAGTT
ACTCATTCGAATTTCCATGTAAACAAAACCTACCACTAGTTTTCGAAAAT
ATGCCACTCGAGAATAAAGATACCGTCAAATCCAATCCGTCAAGCTAACT
GCGCCGCTCTGCTAAAAAATAAATAGAAATTTTACTTTTTTCGTGTGTCA
GAAAGATCGAGGCAGGCTCTTTACTAGGCTCCGGCTTGAAATTCATAGTT
CTTTCATCTTTAAACAAAAATCATGCAAAAAATATTTTTAGAACTTTCTA
TCAAATTAGCCCCTTTTCCATCACATTTTAAGTATCCATTTTAGGGCTTA
AGCTCACAAGAAATTAACAAATTTCGAAACTAAGAATTTCCCTCGGGTTC
CCAAAGGGTTTTAATATTCGAAAAAAGGGGCTGAAATTTGGTGAAAACCG
ACCATAAAGAATTTTATATGTAAGGGTCAATTATCACGCCACCCCTCCCT
AAAGAAAAAAAGCCCGGCTAGCTGGTCACGTGATTTTCCTTTTCCTACTC
TTTAGGTCGATGGTTTACTTTTTTACCACAATCAATGTCATTACACACCT
GGCAGAACTCCGTTGGTTGGTTGGCTCAAACCCTTCATGTTACCAGAAAT
TCTAAACATACAACTTCCATCGAGTTATCTCGATTCCGATCAAAATATCG
ATTTCAATCGGACAATTCTAAAAGCGGCAAATGAAGATTTACAAAAAACA
TCGAGTGATCGATCGATTTATAAATCGAAACTGAACTCATCGATAACATC
GAATGAATCGAAAAATGAATCGAATATGGAAACGTAGCAATGGAGTGTTT
GATAGTATCGATTAATTCTAATCAATCCATTGATAGTGAAGCAGAAGAGG
TGAATATTATTGCATGTTCAAATTGCTTTAACCAATGATTACCGAAGCTA
TAATGAGTGAAATGCTGAAAGTTCATTTATGAGTCGAACAAAAACAAAAG
AATGAACAAATGTCCGAAAGAGTGAGGTTTTCGAGCGACATCCCGAAAAG
TTTAGACTTTTAAGATATGTAATTTACTTTCTACCTACTTTCTCTACCAC
GACAACGTGATGGGTGTATGAGGAGCCTGGTGTTCGTTAGCAATCATTGA
ACTTCCAAAATTGTCGAGTCTTTCAGCATATCATTTTGGAAATCTACCTT
ACACAGAACTTTTTTATAACTGTATTTTTTAAATATATTTCTTTTGATTT
TTAAGAATATTTATTTTACAAGAGGAATGAAAATTATCTGATAGTTCGAT
GGGTGGTGGATGGGTGGTGTCTAACAAATGTCTGTAATAATGTTAAAGTA
AAACTTCCACGTCGCCTCGTTTCGACAGTCTTGCAGCAAAGAATTCGCTT
CGCATTTCGTAATTTCAACTTCAAAGCCTGACGAATCTTGCGGACGTAAA
AAATATAGAATAAAGCATCCGACGAATAACCAGCACAATAGAAAATATTG
AAAACTAAAGTCACCCATGTTGGTATATCATTGCCAGACATTTCCAGTCC
AAAATAGATTAATATATAAACCAGATTAATCAAAGTCCAACATATCAGAT
ATGAGAAAACAATCAATTTCGGTAGCAAGGTCACTTTCTTCATTCTACGT
TTATATCTGCTTGATTGCGCGTGTAGTAAATCTCGACTCCGACGTTCTAT
TGTTTTGACAATCGAATAATAACAAGCAATGAACGATGTCAGAATCAAAA
CATCCGAGGATGGCCAGAAATACAACATTGTTACCAAACCGAAACGTTGA
GGAGTTCTTTGCGTAAAATACAACACCATAGCGACGATTATTGAAACCGA
GACATTAAAAACGAATACAAAATTAGTGACGTAATCCACTTTTCTCGATT
CGTATCGGATATTTAATCGAACGAAAATTGCTCGATCAATTGTCATTGAA
ACTAAGATCAATGTTATCATGGTTCCAAAGAAACCTGTTACCATGACACT
AACACCAAAAGTAACACTACCGTAATGTGCAACCAGGGGGTACACAATAT
CATGACATATTAAGACTAATTCGGTGAAACTCAACCATAACAAATATCGT
TTCTGTATTCTTTGCCAGAGTGTTTTGAAATGGACGATAAATAATAAGTA
TATACCAAGCAGGTGACAGACGAGCGGTATAGAGTATGTTAAAATGAAAA
TTACAGTCTTCAAGTCACTGGTCATGTTTCTCTTGTGTGATCTATTCAAG
TCTATATAAATTCTTTCGAGTATTCTTTGCTACGATGAAACGATAAAGCT
TTTTGGAAAGATTATATGACCTTCTCTCATTTGATTAAGTTCGTCTGTAG
ACAGACTTTGTACTATCTATCTCTATCCAATAAATCAGCTATTGTGCATA
GTAAGAAAATTCCAAAATGTCTGTCTGTCCAGCCAATTTGTCTTATATTG
ATTTAATTACGCGATAACAAAAATTCAAAGTATTTCTGACTTCAATTACC
CTTCCATTTTAAGTAAAGTTTAATACTATTCCCCGTGAAATAATTCCTGA
TCAGATCGCTTAGAGTTTTTTAATTCTCTAGTAAGTGTTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022169-exon-sc0000406-1575043694:256431..256452 | TCONS_00022169-exon-sc0000406-1575043694:256431..256452 | Clytia hemisphaerica | exon |
| TCONS_00022169-exon-sc0000406-1575043694:251361..253397 | TCONS_00022169-exon-sc0000406-1575043694:251361..253397 | Clytia hemisphaerica | exon |
| TCONS_00022169-exon-sc0000406-1510915933:256431..256452 | TCONS_00022169-exon-sc0000406-1510915933:256431..256452 | Clytia hemisphaerica | exon |
| TCONS_00022169-exon-sc0000406-1510915933:251361..253397 | TCONS_00022169-exon-sc0000406-1510915933:251361..253397 | Clytia hemisphaerica | exon |
| TCONS_00022169-exon-sc0000406-1491911889:256431..256452 | TCONS_00022169-exon-sc0000406-1491911889:256431..256452 | Clytia hemisphaerica | exon |
| TCONS_00022169-exon-sc0000406-1491911889:251361..253397 | TCONS_00022169-exon-sc0000406-1491911889:251361..253397 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000406 | supercontig | sc0000406:251361..256452 - |
Blast
The following BLAST results are available for this feature:
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