TCONS_00022178 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022178
Unique NameTCONS_00022178
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length496

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022178 ID=TCONS_00022178|Name=TCONS_00022178|organism=Clytia hemisphaerica|type=transcript|length=496bp
AAACGGTGGAATTTGGTCAaagttttgattgatttgattttgagattttg
agcCATTGATGAAAATTAGcctttttgatctagaaaaacAGAATTTAGCA
TAACATTTGTTGGAAATTTTTAAGGATACTGTATATGAAATTTCACCTAT
TGAATTTGGATTTTGAAGTTTGAGTTTTAAAGTATTAAAGACTATACCAA
GAAAATATCCAGTGACAGAGTTTGGCTTTTCATTTTGCATGGTATGAAAC
AGAAACCTACCAAAATTGAGGGAGTGAATTGTTGGTTAGTCATTTTGACT
TTCGTATTTAGATATTGTTGATGGGAGAAtactttaaaaatctttgaacA
GAGTGATCTCTAGTCAGTAAAGGTAGTAATGGATTTTGTTTTACGGGAGG
TAAGGTTTAtgctaaaaatatttatattaaaaaatttggatttgaattAT
AATATTTTAAACGACATTGTCACTGACTTTTCTTTTCTGTGTACAT
Run BLAST on NCBI

transcript from alignment at sc0000406:68269..68764

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022178 ID=TCONS_00022178|Name=TCONS_00022178|organism=Clytia hemisphaerica|type=transcript|length=496bp|location=Sequence derived from alignment at sc0000406:68269..68764 (Clytia hemisphaerica)
ATGTACACAGAAAAGAAAAGTCAGTGACAATGTCGTTTAAAATATTATaa
ttcaaatccaaattttttaatataaatatttttagcaTAAACCTTACCTC
CCGTAAAACAAAATCCATTACTACCTTTACTGACTAGAGATCACTCTgtt
caaagatttttaaagtaTTCTCCCATCAACAATATCTAAATACGAAAGTC
AAAATGACTAACCAACAATTCACTCCCTCAATTTTGGTAGGTTTCTGTTT
CATACCATGCAAAATGAAAAGCCAAACTCTGTCACTGGATATTTTCTTGG
TATAGTCTTTAATACTTTAAAACTCAAACTTCAAAATCCAAATTCAATAG
GTGAAATTTCATATACAGTATCCTTAAAAATTTCCAACAAATGTTATGCT
AAATTCTgtttttctagatcaaaaaggCTAATTTTCATCAATGgctcaaa
atctcaaaatcaaatcaatcaaaacttTGACCAAATTCCACCGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012439XLOC_012439Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022178-exon-sc0000406-1491911889:68269..68764TCONS_00022178-exon-sc0000406-1491911889:68269..68764Clytia hemisphaericaexon
TCONS_00022178-exon-sc0000406-1510915933:68269..68764TCONS_00022178-exon-sc0000406-1510915933:68269..68764Clytia hemisphaericaexon
TCONS_00022178-exon-sc0000406-1575043694:68269..68764TCONS_00022178-exon-sc0000406-1575043694:68269..68764Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000406supercontigsc0000406:68269..68764 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.370847	0.120545	1.11971	1.2324	0	0.131731	0	0	0	0	0	0	0.082213	0	0	0	0	0	0	0	0	0	0	0	0	0.2369	0.169502	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022178 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top