TCONS_00022206 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022206
Unique NameTCONS_00022206
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1094

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022206 ID=TCONS_00022206|Name=TCONS_00022206|organism=Clytia hemisphaerica|type=transcript|length=1094bp
aatatttaacacaaaaatatttagcacaaGATATTGTGAGTAGGTGTAAG
ACCTTTTGAAAAGAGATGAATTTCCCATCCGAAGTACCTGGGCGACTCTG
CTTCATTCTTTCACGAAGAGTCAACAAGCTTATATGTTTTTATGCAGGGG
ACAGACGAATTAAAGCTGTACGTGACGCGATAATAAAATGTTGGTCAAAa
ggtatcaaaaatgaaaaggtttTATCTCCAGAATGCTATCAATTCAAATT
GGAAGGTGACCCGTTCAATTACTTTGGAGATAACTCTTCCAACAAGACAG
AAGCGTGTAACCTTTACAGTGAAATCATCAATAGCTATTACAAACGTGGC
TGGAAGttaATTGTTGGTACAATCATGAGTCATCGCAACTTGGAAGACCC
CATCCTTATCTTCAAGAAGATCATAAATCCTAGCAAGAACCCTTTACTTT
CCATAGCCATCGACCATTTCCACATACAGCTGGATAACCTACCAACAGAT
CTTATACCAACTGTAACGTACGTCGTTGAGAATCATCTCAATCATGAtat
caaaaagatcaaacagGACACAGACGGAACTGTCATTTATAAATTAAAAG
GAATGGTGGGCTTGCATGGTGAAGAAACCTGGCAATTCGTGCAAAAATTA
CATGAAATTCTCTATAACAACCATTACACAACATTCGGCCACATTCCACT
ACGTGCTTATAAATGTTTCGACTTGTTATTCTTCCAACATTCAACCACTA
TTCTTGACCAAGAACTCTTCACAATGTATCTTTTACATGGAGACACAATA
GAATTAGAGAATTCAAATCACGTGATCAACAACGCCATGGTAGAAGTTAT
TTCAGAAGCCTGGAAAGGAGGTATACAAAAACAAAGTGAAGATGGCGCAC
GTTTCAAGTTGAAGTTGAAAGGATATCCTTTCTCTACTTTAAATGAAATG
GAATGTTTAGCTACGGATTCATTATTCGCCAATATTCTTGAACAATTAGT
GTCTGTCGGATATTCTATAGACTGTTCATTCACGCAAATCAAGTTCGATA
AACGCATTATCTTCAAAAGACAAAAGCCAGTTCATAGAGCGANC
Run BLAST on NCBI

transcript from alignment at sc0000408:152661..156508+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022206 ID=TCONS_00022206|Name=TCONS_00022206|organism=Clytia hemisphaerica|type=transcript|length=3848bp|location=Sequence derived from alignment at sc0000408:152661..156508+ (Clytia hemisphaerica)
aatatttaacacaaaaatatttagcacaaGATATTGTGAGTAGGTGTAAG
ACGTAAGTTAGAACTTCTTGCTCCATCAAAACATTATTTGGCGTTACTTT
TTCATTGGCCTAGTAAGGACCCCCCAGTAAGGTCTTGgagataaaaatta
aaataggcCAAAGAAAGACTGACAAAGGTTTTTCTACATAGCTAGTAAGT
TAGTAAGGTCTTGGAGACAAAAATGAATTTTGGTCGAGAGTATCAGACCA
TTGCCCGACCCTTGCCAAGATTAAATATGGGCTTAATTTGGGCCGATAAG
ATGTTATTGATGTGAAACAACCTTTTTCTATCTTTACAGCTTTTGAAAAG
AGATGAATTTCCCATCCGAAGTACCTGGGCGACTCTGCTTCATTCTTTCA
CGAAGAGTCAACAAGCTTATATGTTTTTATGCAGGTATTTATCGAATTTC
ATTGTTATAATACCTTATCTTattttttacgccggcccttattggcgtta
tttttgggcacatggcgtaataagggccggtgttaaaaggaccggcgtaa
aaagggccaagattttgcaatttttatctaaaggTGGCGTTAATttattt
tcgataattttttctcaatttaaaggattttaggtatgattcgcagacaa
aaattatccattgttttactccatatctaAAACCTcacaaaaatcagtga
tttttaAGAATGGAATTTTTAACAATATACTACCGAAacatgacatttta
atgtaaattttaaacattatttactaatttgaagcataagtagccattta
aaaattttttggcgTTTTTAACGGctctaattggcgtaagcccaaaatta
gacTGTGGCATAATAAGGGCCgtcgtaaaaagggccgataaggtaggtaG
AAGGCCTCAAAGgagaaattttcgcgaaattaagtaaAATATTAAATTGT
ATTTTAACCTAGAAACTTAAACAAAATCTACACCACTCCAAACTTTCACT
TAAAGAAGAGAACTACGTGTTAAAATGACATGAAACCAGTATTCTCACTC
ATGATATTTATTTTAGACCACTTAGTTATGATCATTTGACATACTtaaat
gggataaactttcgcggggacttaatctAGCGGATGAGCACTTCCCTGAT
TTTTCGCGTAATTTCGCTGATCAGGATTacatctaatttttctaaagtga
ttccaaattttgcaaaatcggGTTAGCAAACAGAAATTTTGACATGGTAG
TgtgcaaaaattggaaaataacGAAGAGATTTGAGTAGTCTGATTTGCGG
GACGAAAAAACGGCgatagaaatttcaaatttcaaattttcgcgggtact
taatttcgcggatgaggcccttccaaatttccattgggatttaatttcgt
ggattttcgcggatgacactcaaatttaatccccgcgaaagtttatccca
tcaAAGTAATTAGATATTTTTCCCAAATACTCTAATCACATTATTCTAGG
GGACAGACGAATTAAAGCTGTACGTGACGCGATAATAAAATGTTGGTCAA
AaggtatcaaaaatgaaaaggtttTATCTCCAGAATGCTATCAATTCAAA
TTGGAAGGTGACCCGTTCAATTACTTTGGAGATAACTCTTCCAACAAGAC
AGAAGCGTGTAACCTTTACAGTGAAATCATCAATAGCTATTACAAACGTG
GCTGGAAGGTATTTTCAATTTCACTTGCATTTATTTCTTTCCTAGCAAAC
TATTTAAATTCATTCCAGATTATGCTTTAAAATATTAGCGGAATTAGTTA
TAACATTTTTCTTGGAGTTTCTATCTCATATTTCTTTCATGAACAAGGTA
CTTAAAAGACGTTCTAGACGCATATTTTCTGCAAGCAAGGGGATGCAATA
TAGATTTTATAGGACCTATTCTCACTCGCATTTTTTGCACTTGATTGAAC
TATTACGTCTAACTTGTGCTcaattttcccctttttcatttttcagttaA
TTGTTGGTACAATCATGAGTCATCGCAACTTGGAAGACCCCATCCTTATC
TTCAAGAAGATCATAAATCCTAGCAAGAACCCTTTACTTTCCATAGCCAT
CGACCATTTCCACATACAGGTATAAATCACACATCATTGTTTCTTTGCGC
ACTAccttaaagaaagaaataattcgaaaaaagaaaattcgatGGATTCG
CCCAAACATAATCCTCTAActgctaaattaaattcccgccaaattctAGC
CATCTGcaaatttccgccaaaatttcttccctaagaaagttttattatgt
tttttaaAGCTCCTGTGAAATGTTTTGAGTCACAGATTTCGTTATTTGGT
CCACAGGTTGGTTTTAGAGGAAAGAATACTTTTACTTCATTTGACTTTTG
ACTTTCGTTTTAGCTGGATAACCTACCAACAGATCTTATACCAACTGTAA
CGTACGTCGTTGAGAATCATCTCAATCATGAtatcaaaaagatcaaacag
GACACAGACGGAACTGTCATTGTAAGAGATTCATGATGTCTAACTTGatg
ttggaaaattttgaaaaataagttttgaataAGGTTCTATTCCTTCTGTT
CCAACAAATAACTAAAGATTAGACAAATTTAAGGCTGTGATTTcaggaaa
taataaaaataattttaagccCCTCTTTCTTATACCTGATTCAGCCAGTG
AGATCTTTTTGATCCATGTAAGTTCACTGAGTGTGTGCTGGGTGGGTGTA
CTGAGTGTGCTGGCTGGCATTAAACCCTTGAATCTTCCTCTTTACAGTAT
AAATTAAAAGGAATGGTGGGCTTGCATGGTGAAGAAACCTGGCAATTCGT
GCAAAAATTACATGAAATTCTCTATAACAACCATTACACAACATTCGGCC
ACATTCCACTACGTGCTTATAAATGTTTCGACTTGTTATTCTTCCAACAT
TCAACCACTATTCTTGGTATGTttgaaacttgatttttctttatatgaTT
GACATATTAGGGGCATATTAGCTCTTTTGTACGTTTTATAccctttttat
tagttttaatttttgtccTCTAGTGATTGATAGACTCATCCCGGTCAAAT
CAACAAACATTTTACACTTGCGATCCCCATGATGGCTTTAAAAGCCTACT
GAAATTATATGGATATaacatcacctcgggttaataaatctcaataacca
actttgacctattgaatatctgcttattatttTCTCTTTAAGACCAAGAA
CTCTTCACAATGTATCTTTTACATGGAGACACAATAGAATTAGAGAATTC
AAATCACGTGATCAACAACGCCATGGTAGAAGTTATTTCAGAAGCCTGGA
AAGGAGGTATACAAAAACAAAGTGAAGATGGCGCACGTTTCAAGTTGAAG
TTGAAAGGATATCCTTTCTCTACTTTAAATGGTAAGTCTGAAGTTTGAAT
GAGCTGGTCACATTTTAATCGTGAAAAAGTGATAGTGAAAAACCGCCAAC
AGAAACCACGTGATCTTTAGGGAGCGATTACCGAGCGGTCAAGGCGTCAG
CGCCATAAACCAGGGGCTCGCGGGCTCTGTGAAAGTCCTAGATTACAGGG
CTCTTCGTGTAAAATATCGAACCGCCTTACTAACGAAATTCAGACAAATT
CGTTAATTTTGGAGAAGTAAATTACGAAAttcttcttcttgtttttcAGA
AATGGAATGTTTAGCTACGGATTCATTATTCGCCAATATTCTTGAACAAT
TAGTGTCTGTCGGATATTCTATAGACTGTTCATTCACGCAAATCAAGTTC
GATAAACGCATTATCTTCAAAAGACAAAAGCCAGTTCATAGAGCGANC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012453XLOC_012453Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022206-exon-sc0000408-1491911889:152661..152712TCONS_00022206-exon-sc0000408-1491911889:152661..152712Clytia hemisphaericaexon
TCONS_00022206-exon-sc0000408-1510915933:152661..152712TCONS_00022206-exon-sc0000408-1510915933:152661..152712Clytia hemisphaericaexon
TCONS_00022206-exon-sc0000408-1575043694:152661..152712TCONS_00022206-exon-sc0000408-1575043694:152661..152712Clytia hemisphaericaexon
TCONS_00022206-exon-sc0000408-1491911889:153000..153094TCONS_00022206-exon-sc0000408-1491911889:153000..153094Clytia hemisphaericaexon
TCONS_00022206-exon-sc0000408-1510915933:153000..153094TCONS_00022206-exon-sc0000408-1510915933:153000..153094Clytia hemisphaericaexon
TCONS_00022206-exon-sc0000408-1575043694:153000..153094TCONS_00022206-exon-sc0000408-1575043694:153000..153094Clytia hemisphaericaexon
TCONS_00022206-exon-sc0000408-1491911889:154160..154368TCONS_00022206-exon-sc0000408-1491911889:154160..154368Clytia hemisphaericaexon
TCONS_00022206-exon-sc0000408-1510915933:154160..154368TCONS_00022206-exon-sc0000408-1510915933:154160..154368Clytia hemisphaericaexon
TCONS_00022206-exon-sc0000408-1575043694:154160..154368TCONS_00022206-exon-sc0000408-1575043694:154160..154368Clytia hemisphaericaexon
TCONS_00022206-exon-sc0000408-1491911889:154657..154779TCONS_00022206-exon-sc0000408-1491911889:154657..154779Clytia hemisphaericaexon
TCONS_00022206-exon-sc0000408-1510915933:154657..154779TCONS_00022206-exon-sc0000408-1510915933:154657..154779Clytia hemisphaericaexon
TCONS_00022206-exon-sc0000408-1575043694:154657..154779TCONS_00022206-exon-sc0000408-1575043694:154657..154779Clytia hemisphaericaexon
TCONS_00022206-exon-sc0000408-1491911889:155074..155181TCONS_00022206-exon-sc0000408-1491911889:155074..155181Clytia hemisphaericaexon
TCONS_00022206-exon-sc0000408-1510915933:155074..155181TCONS_00022206-exon-sc0000408-1510915933:155074..155181Clytia hemisphaericaexon
TCONS_00022206-exon-sc0000408-1575043694:155074..155181TCONS_00022206-exon-sc0000408-1575043694:155074..155181Clytia hemisphaericaexon
TCONS_00022206-exon-sc0000408-1491911889:155458..155626TCONS_00022206-exon-sc0000408-1491911889:155458..155626Clytia hemisphaericaexon
TCONS_00022206-exon-sc0000408-1510915933:155458..155626TCONS_00022206-exon-sc0000408-1510915933:155458..155626Clytia hemisphaericaexon
TCONS_00022206-exon-sc0000408-1575043694:155458..155626TCONS_00022206-exon-sc0000408-1575043694:155458..155626Clytia hemisphaericaexon
TCONS_00022206-exon-sc0000408-1491911889:155903..156091TCONS_00022206-exon-sc0000408-1491911889:155903..156091Clytia hemisphaericaexon
TCONS_00022206-exon-sc0000408-1510915933:155903..156091TCONS_00022206-exon-sc0000408-1510915933:155903..156091Clytia hemisphaericaexon
TCONS_00022206-exon-sc0000408-1575043694:155903..156091TCONS_00022206-exon-sc0000408-1575043694:155903..156091Clytia hemisphaericaexon
TCONS_00022206-exon-sc0000408-1491911889:156360..156508TCONS_00022206-exon-sc0000408-1491911889:156360..156508Clytia hemisphaericaexon
TCONS_00022206-exon-sc0000408-1510915933:156360..156508TCONS_00022206-exon-sc0000408-1510915933:156360..156508Clytia hemisphaericaexon
TCONS_00022206-exon-sc0000408-1575043694:156360..156508TCONS_00022206-exon-sc0000408-1575043694:156360..156508Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000408supercontigsc0000408:152661..156508 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.536093	2.74817	0	1.03276	0	0	0	0.539681	0	1.21185	0	0.0787222	3.27812	0	2.60041	2.45305	6.51465	7.48736	3.38014	3.78984	0	1.33576	2.07366	3.52944	0	0.231124	1.52374	0.794209	4.68368	7.28396
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022206 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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