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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022228 ID=TCONS_00022228|Name=TCONS_00022228|organism=Clytia hemisphaerica|type=transcript|length=593bp
GTTCGGTGCACATCGAAGATAGCAGGATGGAATTATTTTGCTCTATAATC
ATTTGGTTCACAACTTTACAGACTTGTTTTCCCCACAGTATATCAAGCAG
TAAATCAACAACAATGACATGCACCAAAGACGAACTTAAACACCGCATGA
GAGATTTATTCGGTGGAAATGGAGCCTTACCTGATTTTTTATTCTACGAG
GAGAACGAACTCAAagatttcatgaaaaataaaaaggaatcCCCAATCCG
AACAACgctaaaagataaacaaaaaatcaaactacGTCCGAAATCTCCGG
TGCAGGAAATGCTTTTGGAGGCTTGGGATTACGTTGAGCAAGGCCGATAT
GTCTCGATGATTAGACGATGGGCGAGACGATTGCACAGGACGataaagaa
agttaaaaaccGTCAATACTTACGTCACCGGTATTACCGCCGTTTTATGC
GACGTCATCACCATTATGGCGTCAAAGCGCAAAGACAACATTACCACCAC
AACGACAAGAGAGATATGGGAAAGCAAagtcaaaatgacgtcaatgaCTT
GCTAAGCCTCGACGTGGGACGAATGCGAAATGCAGCCTCGTTT Run BLAST on NCBI protein sequence of TCONS_00022228-protein >TCONS_00022228-protein ID=TCONS_00022228-protein|Name=TCONS_00022228-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
SVHIEDSRMELFCSIIIWFTTLQTCFPHSISSSKSTTMTCTKDELKHRMR
DLFGGNGALPDFLFYEENELKDFMKNKKESPIRTTLKDKQKIKLRPKSPV
QEMLLEAWDYVEQGRYVSMIRRWARRLHRTIKKVKNRQYLRHRYYRRFMR
RHHHYGVKAQRQHYHHNDKRDMGKQSQNDVNDLLSLDVGRMRNAASF Run BLAST on NCBI transcript from alignment at sc0000408:36773..38252- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022228 ID=TCONS_00022228|Name=TCONS_00022228|organism=Clytia hemisphaerica|type=transcript|length=1480bp|location=Sequence derived from alignment at sc0000408:36773..38252- (Clytia hemisphaerica)
GTTCGGTGCACATCGAAGATAGCAGGATGGAATTATTTTGCTCTATAGTA
AGTTTCATGTGTTCCTTTTTCTCATCTTATTTTCCTGTTCCAGCTCCAGT
TATTAGCGAGTTTAAGTATCGATAGATAAATCACGACGACGGACGGATTT
TCTCTAGCCTTCATTCGCGCTACGGCACTTTTTTACAGGCCGATCGGAAA
GCAAGCTAGACTTATCCCGTATAATCATATCAACTTTCCTTCCAGAAGGA
ATTTCCGCTTGATTTTCCTATTAAGCTAACCTCACTATTAGCGAGTTTAT
GTATTCGAGATAAAGTGAGGGGGCGATATAAAGCAAAGTTGACTTGTCTC
CAGAATCACCGTCCACTTTGCTCGACGACGGTAAAAACACCAAAATACTG
TCGTCTGTTTAGGCTAGCAAATGCGATATATAGCCGTACATCAACATCAA
CTTTTTTTTTGTAGCGATCTCACTTACCGTCGCCCTCGATATCCTCCGAT
ACATAAACTCGGTATTGAAAAATAATAATCACCAATCCCTTTTCGGAGAG
CTTCAGAAGGATACAGGCTATATTGGTACCAAACTCTTTTCAACTTACTA
TCAAGAGGTACCGTGGTATCAAGGGTGATCACTGCACTGCCACCAATAAC
ACTGCGCATTCAAGGAGGATGGCAAGCTATGCAAACGAAAACAATATTAG
TCTTAAATAAAATATTAGTCATTTTAAATAAAATATTAGTCATTTTAAAT
AAAATATTAGTCATTTTAAATAAAATATTAGTCATTTTAAATAAAATATT
AGTCATTTTAAATAAAATATTAGTCATTTTAAATAAAATATTAGTCATTT
TAAATAAAATATTAGTCATTTGAAAGTTATTCTTCTTCTCTTTCTAAGAA
TGTGACTTTTTCATTTGATTGATTTGTTTTTCAGATCATTTGGTTCACAA
CTTTACAGACTTGTTTTCCCCACAGTATATCAAGCAGTAAATCAACAACA
ATGACATGCACCAAAGACGAACTTAAACACCGCATGAGAGATTTATTCGG
TGGAAATGGAGCCTTACCTGATTTTTTATTCTACGAGGAGAACGAACTCA
AAGATTTCATGAAAAATAAAAAGGAATCCCCAATCCGAACAACGCTAAAA
GATAAACAAAAAATCAAACTACGTCCGAAATCTCCGGTGCAGGAAATGCT
TTTGGAGGCTTGGGATTACGTTGAGCAAGGCCGATATGTCTCGATGATTA
GACGATGGGCGAGACGATTGCACAGGACGATAAAGAAAGTTAAAAACCGT
CAATACTTACGTCACCGGTATTACCGCCGTTTTATGCGACGTCATCACCA
TTATGGCGTCAAAGCGCAAAGACAACATTACCACCACAACGACAAGAGAG
ATATGGGAAAGCAAAGTCAAAATGACGTCAATGACTTGCTAAGCCTCGAC
GTGGGACGAATGCGAAATGCAGCCTCGTTT Coding sequence (CDS) from alignment at sc0000408:36773..38252- >TCONS_00022228 ID=TCONS_00022228|Name=TCONS_00022228|organism=Clytia hemisphaerica|type=CDS|length=1182bp|location=Sequence derived from alignment at sc0000408:36773..38252- (Clytia hemisphaerica)
ATCATTTGGTTCACAACTTTACAGACTTGTTTTCCCCACAGTATATCAAG
CAGTAAATCAACAACAATGACATGCACCAAAGACGAACTTAAACACCGCA
TGAGAGATTTATTCGGTGGAAATGGAGCCTTACCTGATTTTTTATTCTAC
GAGGAGAACGAACTCAAAGATTTCATGAAAAATAAAAAGGAATCCCCAAT
CCGAACAACGCTAAAAGATAAACAAAAAATCAAACTACGTCCGAAATCTC
CGGTGCAGGAAATGCTTTTGGAGGCTTGGGATTACGTTGAGCAAGGCCGA
TATGTCTCGATGATTAGACGATGGGCGAGACGATTGCACAGGACGATAAA
GAAAGTTAAAAACCGTCAATACTTACGTCACCGGTATTACCGCCGTTTTA
TGCGACGTCATCACCATTATGGCGTCAAAGCGCAAAGACAACATTACCAC
CACAACGACAAGAGAGATATGGGAAAGCAAAGTCAAAATGACGTCAATGA
CTTGCTAAGCCTCGACGTGGGACGAATGCGAAATGCAGCCTCGTTTTCGG
TGCACATCGAAGATAGCAGGATGGAATTATTTTGCTCTATAATCATTTGG
TTCACAACTTTACAGACTTGTTTTCCCCACAGTATATCAAGCAGTAAATC
AACAACAATGACATGCACCAAAGACGAACTTAAACACCGCATGAGAGATT
TATTCGGTGGAAATGGAGCCTTACCTGATTTTTTATTCTACGAGGAGAAC
GAACTCAAAGATTTCATGAAAAATAAAAAGGAATCCCCAATCCGAACAAC
GCTAAAAGATAAACAAAAAATCAAACTACGTCCGAAATCTCCGGTGCAGG
AAATGCTTTTGGAGGCTTGGGATTACGTTGAGCAAGGCCGATATGTCTCG
ATGATTAGACGATGGGCGAGACGATTGCACAGGACGATAAAGAAAGTTAA
AAACCGTCAATACTTACGTCACCGGTATTACCGCCGTTTTATGCGACGTC
ATCACCATTATGGCGTCAAAGCGCAAAGACAACATTACCACCACAACGAC
AAGAGAGATATGGGAAAGCAAAGTCAAAATGACGTCAATGACTTGCTAAG
CCTCGACGTGGGACGAATGCGAAATGCAGCCTCGTTTTCGGTGCACATCG
AAGATAGCAGGATGGAATTATTTTGCTCTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022228-exon-sc0000408-1575043694:38206..38252 | TCONS_00022228-exon-sc0000408-1575043694:38206..38252 | Clytia hemisphaerica | exon |
| TCONS_00022228-exon-sc0000408-1575043694:36773..37318 | TCONS_00022228-exon-sc0000408-1575043694:36773..37318 | Clytia hemisphaerica | exon |
| TCONS_00022228-exon-sc0000408-1510915933:38206..38252 | TCONS_00022228-exon-sc0000408-1510915933:38206..38252 | Clytia hemisphaerica | exon |
| TCONS_00022228-exon-sc0000408-1510915933:36773..37318 | TCONS_00022228-exon-sc0000408-1510915933:36773..37318 | Clytia hemisphaerica | exon |
| TCONS_00022228-exon-sc0000408-1491911889:38206..38252 | TCONS_00022228-exon-sc0000408-1491911889:38206..38252 | Clytia hemisphaerica | exon |
| TCONS_00022228-exon-sc0000408-1491911889:36773..37318 | TCONS_00022228-exon-sc0000408-1491911889:36773..37318 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000408 | supercontig | sc0000408:36773..38252 - |
Blast
The following BLAST results are available for this feature:
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