TCONS_00022240 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022240
Unique NameTCONS_00022240
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1134

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022240 ID=TCONS_00022240|Name=TCONS_00022240|organism=Clytia hemisphaerica|type=transcript|length=1134bp
tagcaTAATTAAGAcgacaaaattaaaaagtatcgtttgttgatttggct
gaaatttttttcgcaCACCTGAATTTATTACCGTGTGGCATATTTCACCG
TTGTAAATCACCACAAAGATGCCAGAAGAGACGACTTCGTACGTTACTGA
TGCCAACATTACAGACATCCAGAAACGAAAACTACCCACCAAACACTATG
TTTATATTATCAATGTACTTTGGAATGATGGCAAAAAGCAAGTTATTTGT
CGACGATATAATGCCTTCTTTGAACTTCAGacATCTTTGATTGATTCCTA
CCCAACGGAAGCTGGTGTTCACAACCCGACAGCCAGAGTTATCCCTTTCT
TGCCAGGAAAAGTGTTGTTCGGTCGAAGTAATGTTCGCGAAGTGGCATTG
AAGAGAAAAGACGCCCTTAACGAGTATTTAGAGAAATTGGTGAAACTTCC
AGCCAAGATTTCACAATGTAAATTGGTTCTTGACTTTCTCCACGCGAATG
AAGAAGATGTCAAAAATCTCTTGAGTGGTGgagagaagaaggagaagaaa
gaAAAGACTGCAGACTCCATCTCTGATCCAGTGCTTCTCGAACAATATAT
CGTACTTACCAACTTCAAAAGTAAACAGAGGAACCAGGTTTCTTTAGCAG
CTGGTGATACAGTAGAAGTGATTGAGAAACATGAGAATGGGTGGTGGTTT
GTTTGTATAGAGGATGAACAGGGGTGGGCGCCCTCCTCTTATCTGGAACC
TCTTGAAGGCAGCTCTTCGGGAGAAGTTGAGGAGATCGATGTCCAAGGGA
GAGAGGGACGTCACATTTGTACGAAACCTTTCAAATCTAGTATGCCAGAC
GAATTGAATCTAGAAGTAGGGGATGTGGTCGACATCTTGGCCAAATGTTC
TGATGGTTGGTGGAAAGTCACGTTATCGAATTCGAAGCAAGGTTATGTTC
CACTGAACCATCTGAAGAAGATACCAAAGAACGCTCAAGGAGACCTTATG
AAAACTGTTATCGATGATGCCAAGAAGGAAGAATCATCCACTGGTGCCAA
GAAATCATTCGAAACTGCACCAAGAAAGAAAACGATTCGTGTAAGTTTTC
TTTATTTGCGGCCTTCTAAACTTTTGGTTCTAAG
Run BLAST on NCBI

transcript from alignment at sc0000408:219894..232444-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022240 ID=TCONS_00022240|Name=TCONS_00022240|organism=Clytia hemisphaerica|type=transcript|length=12551bp|location=Sequence derived from alignment at sc0000408:219894..232444- (Clytia hemisphaerica)
TAGCATAATTAAGACGACAAAATTAAAAAGTATCGTTTGTTGATTTGGCT
GAAATTTTTTTCGCACACCTGAATTTATTACCGTGTGGCATATTTCACCG
TTGTAAATCACCACAAAGATGCCAGAAGAGACGACTTCGTACGTTACTGA
TGCCAACATTACAGACATCCAGAAACGAAAACTACCCACCAAACACTATG
TAAGTCAAATCATTCATATTGTTGCAATACCTCCATATTATCCATAAGTT
TTATTATAAGAAGTTGTAGCTAGTACATGATTTTGAATTAGAATTATCCG
TTCATATTCTTATTCATTCTTTAACCCCTCGAACATCTTTCTTCTTTTTT
TTGTTAAAATCTTATGATTGTCAAGTGCTATGACCTTGAAATTCTGACCA
AAATTTTGGTTGGGCCACCTGTCTGGTTGGTTTTTTTAACGAAGCAAAAT
AAAAACTTGACCAGAATGAAATATTGATTGAAATTTGTTACTGAAGGCTA
ATTTGTCAACAAAAAAAAAAAAATTATAATACTTATTCCCCAAAAATGCA
TGTCACGTGGAGTTGTCTCACAAAATTTGAGCAAATAAAATTAAATTTAC
AAAGAAGTTAGAGATGGGGACCTATTTTAATTGGAAAGTCTCATCATTGT
TCTTTTAATACCGTTCTAATAATATAAGATTTTATTCGTGCTAGCAAGAA
CTTATAGTCCTGTAGAATTAATTAGAATTGGATATTCGAAGTTTCTGTCC
GACCCGGGTTAGTAGCTTTACCTGTAACGCCAGTCTTTTGGGCATAGAAG
TTTTGCCAGGCTTAATTAGCAGGCCTCATTAGCAGGCCTCGCAAAAAAGT
CTTTAAACCCTATCTTTCGAACTCGTTATATGCGGTTACTTTCTACGAAA
GATTTTTAATAATCTCTCAGTCCATTTAAGGCTTGGACAAACTCTTGTTT
ATTCAACTTATTCACATTGTCTTTCATAAAAAGCTACTCGGTTTTATGAA
GCTTGATTATCAGAGCACCGTTGCCTTTAATTCATGATATGCACCATTGC
AATGTCTTCCATTCCACCCAATAGCTGATTGGTTGAAAGTGACGTATTGA
CTGCTTTTACGTCACTTTCAACCAATGAGCTATTGGGTCCATGATGTAAT
GTCAGAAGACATTGCAGTGGTGCATATCATGAATTAAAAACAAAATATTG
CTGTTTTTCATCTAACACACAAAATGTAAAGGATAAATGAAAAACATTAA
CCAACTAATTTGTTCATTAAACTGTCTTTAGGGACGGGCTCAGGAAACCT
CTAAAGACACAAAATCAACCATGATACAAAGGATAACAAGGAATGACGAT
TCAAAATCGAATTTTGATGTATAAATCGTCGCTGTAGAAAAAAAAAGGCG
TTATGTCCATTTTTGCTGTCGACATGTTATCCCGGAATATGGCGCACCGG
CTAGTCATATTTTTGTATCATGGGCCCAACACTAAGCTTTTTAATTATGT
TTTTTTCTGCTTATTCTTGATATTCATGACGTAATCTTTTATACGAAACA
CACGAAAAACTATTTCTGTTATTACATAGTCCGTTCAATTATGGAGATGA
GAAAAATTTATCTCAAGAGCAAAAAAATATTGTAAAAATATAAACAAAAG
TTATAAATTAAAATTAATATAATTAATATAAATTAAAATTTTATGGCCTG
GGGAGCCAAAAAATAAAAAATTAAAAAATTTCAAAAATTGGACTCCTTTT
TATTCTATAGCGACGAAATATTGTTATTATTGAAAGAGGATTGGAATCAA
GTTTAAGGGTGAATGTCAAATGATTCCAGATTGGATTGAGTCACTTCATG
TAATCAGTTTAAAAAGACAAATTTTTTTTTTTCTAAAATGATTTGGATGG
TTTTGTGCATACTCTCCTTACTCCTTGGGAGAAATTCATCAGAAGCGTCG
CACAAGATTATTGGTGTCTTTTCAAAATGTGCCGGACAGACCACCAACAA
TACAGACTTCCAAAAACGAGCTGTGCTTTACGACCATGTTTTTAACGAAA
CATTCCACATTGCTAAAATGTCTTATCCGAAATTTCATGATCATGAATAG
ATCAGTTTAGATGTTTGTGAAGATCATGAGCTTTTGATCAATCTCATCGT
TACCTTTATTTTGGACCTCGACTTCAATGTTCAATTCAATGTTTCAATTC
TGGGGACGAAGGGTACAGACCCGGTACAGATAGATCTATACACGTCATCA
TCGTATGAAAAACCAAAACAATATTTACTTCTTCATCAGTTTTTTAACTC
ATAGTATGAATAAACTATACCGCCTTAAGGATGTTATCGGCACGCCTTTG
GACGGTTTTGTTAGTTTTGAACAAAACGATTGGAAATCCAATGATTTAAT
TTGAGTCTTTACTTATTTCGAAAACTGTCAAAGTTTACAGATTGGAAAGG
GTTGGTCTATTACTCCTGAAAGGCTCGAAAACAGAATTCAGTGAATACTA
CTCACGTATGTACGAAAGAGCCATTCAGAGAATCCGTCATGATCACCCAA
ACGTTTGCTATTTCACTGATTCGATTAATATCCGAAATTCAATCCAGTTA
GATAAAGCAGCTGACAATCTACACCAAGAACTATCGATGAATGCTCTGGT
TTTGTTTGGCACTCCAAAAGATCAAATGTACTTCATCAAAACTGTCAATA
TCGGATTATACAATTTCATCTGGGTGACGCATGATTTGGATGAATGGAAA
ATTTATCCAGCATATCTCCATCTTTATCATTACATCATGATTTTCTTAAT
TATCGCACAAATATGAGGACTTTAATTCTACGTAATCGTTCTAAATTTAA
ACACCGAAAACATCTTTTCCAAAAGTATTTTGTTCAAAATGACAGTGTGG
CTGAAATGGCTCATGCAGCATTCGAAACAACATTTAACCTTCTCGGAAAT
AACTCAAGGGGAAAGCTTGGTAATGTTTTAAGGCTACCATCGTTAACAGA
AAACCATTTTTTAATGGTAAGAGGGTCAATATCTGTCGTAGAAAAAATTG
TTTTTGATGAGTTCAGTAGTATAGAGAAAAGATTGTTGGAAGAATTTAGT
GTCAAATTACAAACTCTTCCAGAAATATCTACGTGCGAAGTGTCCGTCAG
GTTGGGAAATAAGTAGAGGAAAACTTTTAAAACAATTCACAAAATGGAAT
TTCGAATATGGTTTCACTTGTAAACAATGTCAAAAAAACTTCATTAAACA
AACGGAAGGAAATGTAGAAAAGTGCCAACAATGTTCTCGCTATTACCTTT
CCAACGGTAATCATACGAGATGTCATGACCCATATAATGAACAATTTCTA
GTCAAAGATACAATTCACTGTACAGCCTTTGTTTTGAGCAGCTTTGGTAT
TATATTTGGTATTTTTGCTTCAATAACTTTCGTGGTATATAACGGTACCC
CCATTGTCAAAAGCTCTGATTTCTTATTGACTGTGATTCACTTGTTTACT
TCAATATCCATCAATATAGATTTCATAATATTACGTCATATTAAACCAAG
AGGATGGACTTGCTACTTGGACGCCATTATTGCTTGTAATTTATACACAA
TTTTCATGGCGATCCTTCTTATGAAGTCACATAAAATCTTGAAAGCTTTT
AATGCGATGCACAAATTATCAACAAAAAGCAAACGAAACACTGTTCTCCA
GCAATGGTTTACCATTTTTATTCTGACTGGTTCAACTTTTGTTTTGACTT
TGATTGCCATGGAAACACAAAAAATAGATGTTCAATCTGAAAGAAATACT
CAAACTCAAATCATATATTTTTTCTGTAGAAATATCCTCCCTAAAACCGT
TCAGCTGACTTTAGCATGACCTTTACAGGTGGCTACTTTTATAATAACAT
AGATAGGACGAAATTTGCCGGATATTTTCAATGAATAGATGTCTTTATTA
AATACTTCATTTACTTCAACTGTATCCTTTGCAGTCATGTTTATTTTGTT
GAAGGTCCTTTCTTCCATGTTTGTTTTGTTGAAGTTTCGCAGTCGAGATC
CTTTCTTCCAAGCATCAATAATTTGGCTTGCACTCTCATTGAATTAAAAT
ATTTATAATTTGTTATGTTATGGGAGGAAAGTCTACGCGAAGTTATATTC
AAAAAAAGACTTTCGAATCGAACTGTAGTGACAGCCTTACATCCACATAA
CAAACAGGGGGGGGTCTTGCAGTTACTCCTTGACACTATGTGGAGTAACT
GCAATTTTGGACATTTTCTACAGACACCACCACCCTTGCAGTTATTCCAT
AGTGTACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACTG
GGTACGTCTTATTAACGACCGTTCAAGAGTTAAATATCTCAATCATTTTC
CAAGTTTGTTAAAATATCTTTCATGCCTTGATTGAAGAAAAAATTTGATT
TTTTTTTTGACTTTTGAAAAAAATGTTTTGAATTTTTTTGCTTCCGGAAT
TTTTAAAAACCTATGATTTTAAACTGAAAAATTGAAAAATGTGCTCACTT
AGTACACCATATCCTACCAAAATCGACAATTTTGGGCTTAGGCACCACCC
ATGTTGCAGTTAGTCCACTGGTGGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAGTCCACTGGTGGAGTAACTGTTTTCC
CAAATTTTGGTTTATATACCACCACGGTAGTAATTGTCATAGTGTTTATA
TAATAACTGCATGACCCCCCCCTGTAACAAAGTCAATTATGATCTTCATT
ATATTCAACTGTTACACCGTTGTTGTAAAGCCAGGCTAATGGTATTTAAA
ATGAGACCTGAATGGCTATGAAAAAATGCTGAGCTTGCGAAAACATTCAA
GTTGTCAATGGAATGTCTTTCTAGAATTACATCATGCCGACCATCGATTT
AGAACGCTCATAATAATTCAAACGAATGGTCGACATTTTTTATGTATGAA
GTAAATATATTTTGCATAACTTTTGCACATAGCTTCCATATGTATTGATT
GGCTTTAAATTTCCAACTTTCAGTGTATTTTAAGAACAATGCGAGAATAC
GTGGAAAGATATCGACCGCAATAAGTTTATTTTTTGACGGCTATGTGTTA
GCCCTCCCTTTCACGAATAAAAAATCGAATCGAATAAAAAATTCCTGAAT
TTGAAATAACGAAAACCTTGAAAAGTCAATTTTAGTGTTTATGCTTTTTT
TCTCGATTTAACGGCCAATTTGTAGAATTCTGTATAGATCTCTCTACCCT
CCTAAAGGAATTCGTTTGTAAGGCTCGTTCCTCTAAGTAAGGCTTACTTA
CCTTCATCTTCCTTTCCTTATTGTGTATTAGAATTGCATCATTCACCCGG
CGTCGCACCCGCCGAGCAGAGTGTTGTTGAACACATCAAAAGCCCTTTGG
ATGGAAAATTTTCAATTGAGGCGAAAATAAAAAAATGTAGAGTTTCATTG
CAAACACATCATTGACAAACTATTTATTTTGGACTGTTACCAATATCAGG
GACATAATGTAGATTTATTTTCTTGTTTTATTTCCAGGTTTATATTATCA
ATGTACTTTGGAATGATGGCAAAAAGCAAGTTATTTGTCGACGATATAAT
GCCTTCTTTGAACTTCAGGTAACTTGTAATTTATTGAATCTGCACCCATT
TATTCACACTGATTGTCTACGAGGGAGGGAGGATGCCATACGTTTCATTG
TTTTGTACCAAACATATTTCTTTATTCCTAAAACACAAGTGTCCCTGTTT
CATATCAGACACATATTTCATATCGGGACAGTGTCCCCTATTGTTATGTC
ATGCTGATTTAAGCAAAAAAATGTCTTTCTTTTCCTCTTTCTGACCAATC
TTGCTCCATATCTGTGTCAATCCAATGTGAAAAAGCTTTTGAATTAAAAG
TGATGAGTAAGCAAACGATATCACTCTTATTTAAAAACAAAACCTTTAAA
GTTACACAATGGTGCAACCTAAAAAGCCTAGAAAATTGCTGAAAATCTAA
AAGAGGAAAAACTTTCACATAACAAGTCCTAATCCTAGTCCAAGTCAACT
TCTATCGTCTTTTTTGCAAAAGGTTTGTCGATCTTTTGGGTCAACTTTTT
TTTTGTGGAGGGGGAGGGGAGTGGGTAGGGCATCTTTTTCTTTCTATATA
AGTTTATAAACAAAAGGGTAACTATATCAGCTTCCCAAATATTACGTTAT
ATTGATACCATTAAAAAATATTGATGAGCCTAATTATACTTAAATATTTG
TGGATTTCCATTTCATTTGTTCAGCTTTATGTTTAAAGCTTTATGTCTTT
CTTTTACTGGTAACATGGTCCTAGAGAGACCAATACTCTACTAAACGATT
CTTTGTACCCTTAAGAGGCTTTTTCCAATATTCTGTCTCTGTGAATGTGT
CAAAAAGTTTTATCTTTAAAAAGACCATTTTAAATTTTTAATCTCTATGA
AGTTTTAACAAGATGCCATTTCCTTGAACATTAATAACAAAACACCGTTA
AAAAAAGACCTTACAGTAAGGGGAAAAGACAATTTTTGTTTAATACCAAA
ACTAAAAACTCAGGCTTGCTACAAAGGTATTTTCACTGACTGAACAATGG
CGTAATGGCGTTAATCATTTAATTCCGTCCGTTAGTAGAGGGATAGGAAA
AATATATGCATAGTAGAATCAGTGCGTCAGGGTGGTTTATGGAAAAAAAT
GGCGGTAGAGTTTGGAACAAACACTGTAAACACCTCCACAATTGCTTACT
CCGCATGGGCTAACCAACCGTTCACAAATTTTTCCTGCCTCATTTTAGTG
ATCTTGTCCAGGCGATGGATTGTTTATCGTCCTTTCAAAGAACCCAGTTC
TACCAGAACGTTGTTTTAACGTTCATCTAACGTTCGAGATCAGTGCTATT
GATGTGTTCGATTCTGCTTCATTTTTGTTCATTTTTCATTTTCCAGACAT
CTTTGATTGATTCCTACCCAACGGAAGCTGGTGTTCACAACCCGACAGCC
AGAGTTATCCCTTTCTTGCCAGGTATGAATATCAATCACCACAAAATGTC
CATCAGACGTACTATGTAGCTTTACAAAAAGCATGCTGTTTACAGAAAAT
ATCCCATGATGTCGATTATACCTCAGGAAAAGAACAACCAAATCTTGTTG
ATAAATCCCTTCCTACTATTTGTTCATAGTGTTATCCTCATTAAATAATT
TAGGTGCAAGTTTTACTATATTTCGGTCCGAAATTGATCATAAAGTGCTA
ATTTTGTCGAAAGCTTCTAAATGTGTATTATTTTCCCCCTAAATCACGCT
ACATTAAGGAAATTGGCTAGACGAATGTTATATCTGATTGTTAAGCTACT
ATATCCCAAAAAAAAAAAAGATCAATAATTTTCAAACGTGGACTTGTTTC
ATNTATCTGATTGTTAAGCTACTATATCCCAAAAAAAAAAAATGATCAAT
AATTTTCAAACATGGACTTGTTTCACGTAAAGAAGAATAGCACTTCCAAC
TCTCGAGATTTGATCAAATTTTTATTTTCATAAAGCGAGTTTTGCATCAC
CTAATCTCACAATGAATTGTTCAACTTTTCTAGGAAAAGTGTTGTTCGGT
CGAAGTAATGTTCGCGAAGTGGCATTGAAGAGAAAAGACGCCCTTAACGA
GTATTTAGAGGTAAGGTTACTCGATCCAGACCCCTTTCTATGAGTCTTAA
GGTACTATTTACATGATATTATGACCTTGGGCAAATCAATATTTTAGTTT
TTTTTAAAGGATTTTGGAATTTTTGAGATATGCAATTGATTTTATCCTTG
ACGTTTACCAGTTAACGCGAAACTTAAAAAGTCCATGGGCTGCATAAAGC
TAAAGTTTCAGATCAACGTTTTTGCGAGTTTTTGCACCTGCTTGGAAATA
TTGGATTGATCTTGCATCTTTCTTTCTCATAGAAATTGGTGAAACTTCCA
GCCAAGATTTCACAATGTAAATTGGTTCTTGACTTTCTCCACGCGAATGA
AGAAGATGTCAAAAATCTCTTGAGGTAAAATTTTCCTTCATGTTTAGTGT
TATCCTATGTCAAAACGTCAAAAAGAGGTTCATCAAACGTCCTTAAGGGA
ATCAATGATTGAAATGAGATTCATTCTTCCTTGCCTGCAAATCAAAGAGC
TATAGTTTCAATCGGTGATTCTGACCTTTTCAACGACGGGTGACGAAATT
AAATGGGGGATATCGACAACAGACTGACTTATGATACCTATTGTTGGGAT
GAGAAAAGCAAAATGATGGTGAAACCTAGATTTTTAGAAACTATGCTGAT
TAGTACTAGGATAGTAATCGTATATGGTTTGGAGTGCAATTAACGATTAA
TCACGAGTAACAAAGGAGTCCTGTTACGAGTGACTCAACGTTAATTGCAC
GATAAAAGCATACTATTGAGTGATTGCTGTTTGTAAAAATATTTTTTCAT
ATTTTTGTAAACATTCGATTCGAAAACCTCTTTATTGTTCTTTTGTCTAA
AAAGAAGACTAGACATTGTAGTGTGATTTCTCTTTGTTTTTATTTAGAAG
AAATTGCAATTTCTTTATCTTTAAAGTGAAAAAGTCCCTGTATTGTTACA
CTTGGAGGGGCGGGGGGGGGGGGCTTTTTCCCCTTTTTTTTTTTTTTATA
AAAAAAGGTTATTGTTTTGTTTTGATAAAAAAAAAAAACGGTGTTGTTGA
AAAACGGGGGGGGGGGGGTTTTTCTTTTTTTTTGCCCCCCCCGGGGGGGG
GGGGGGTAAAAGGAAAAATAGGGTAAAAGGGCCCCCCCCCCCCCCCAGCC
GTAGAGTGCAAAAAGTAGTAATAGCGCAATTAACGATTAATCGCGTTCCT
CTAAGCCAATCAGATTCGAATAATTTTTCTTTTCAACTCATCTCAGTGGT
GGAGAGAAGAAGGAGAAGAAAGAAAAGACTGCAGACTCCATCTCTGATCC
AGTGCTTCTCGAACAATATATCGTACTTACCAACTTCAAAAGTAAACAGA
GGAACCAGGTATACTTTCACTCTCATCTATTCATTCTGACAAACTGGAAA
AAAATGTCAAAACAATGTCTTTTGACGTCAATTGGGTTACTTTCATTGGG
CAACATTCTGCCACAAACAATAGACAATCATGTTGTGACTTTCAAAAATC
GAAGATCACTAATTAATTTGGTCTAGAGGCTTTGAAATTTATCCCGCATT
TAAGAAAAGAATCACGATTGACGGTAGATTTCATAACTCCATATACAACG
TTAGATGGATGTTGAAGCAGCATTGCGCAAGAATCGGAAAAACTTTCTTC
AGCCTCTCAAAAGGTATACGGATGTTTTCCTTGAAACAGGAACATTCTTC
AACCACCCTTCCGCCCTCTCTGTCTTCTAGGTTTCTTTAGCAGCTGGTGA
TACAGTAGAAGTGATTGAGAAACATGAGAATGGGTGGTGGTTTGTTTGTA
TAGAGGATGAACAGGGGTGGGCGCCCTCCTCTTATCTGGAACCTCTTGAA
GGCAGCTCTTCGGGAGAAGTTGAGGAGATCGATGTCCAAGGGAGAGGTAT
ATTTCTTACTATTCTAAAGCTCATTTTCTTGAATATAATTTATCTAACTT
TTAAGATCGATAGAGGTAATCTTTGGACCATTGAATTATTTCATATTTTC
TTTTTGTGTTTGATTCAAACTAAGAGCATTTGGTTGGTGCAATATTGCCG
CCTGTTTTTGGGAAGATCTGCAGCGCTATATAAAAATCAACTCTTTGTTA
TCAGATCCGATTTTAAGCTCATACTCAAAACATGTTATGTTCTTTGGGGC
TTATGCTTTTGATGTGAAACTTCAAAAATCGAATTTTTGCTTTATTAGAG
GGACGTCACATTTGTACGAAACCGTTCAAATCTAGCATGCCGGACGAATT
GAATCTAGNTTGCTTCATTAGAGGGACGTCACATTTGTACGAAACCTTTC
AAATCTAGTATGCCAGACGAATTGAATCTAGAAGTAGGGGATGTGGTCGA
CATCTTGGCCAAATGTTCTGATGGTTGGTGGAAAGTCACGTAAGTATCTC
AATGCAATGCAGTTGTCAGATTCTTTCTTTCTGCCTCTTCATGCGGCTGC
TTACTGAAATTTTGATTCCAAGTGTGTTTTTTGTTTAAAAGTTGATATTT
TTCGTGCAAATTACACAGAATCAAATTCAAAGCTAATTCAAAAACTGTGT
ATTGAATTTTTTTTTGGTCCGTTCTAATTGAACTTACAAATTTAGATTGT
TTTATAGGAAACCCCTCACAGGAAAAAGATATCCCCACTTCTGTAGATTC
ATTTCTTAAAGTTCTTGGATTTATATTGCTCATACCGAGCTAAAATATGA
TATAAACGTTAAATGGACGTTGAAGCAACGTTGTGTGAACTTTCCCTCTT
CTGTTGACATTAGGTTATCGAATTCGAAGCAAGGTTATGTTCCACTGAAC
CATCTGAAGAAGATACCAAAGAACGCTCAAGGAGACCTTATGAAAACTGT
TATCGATGATGCCAAGAAGGAAGAATCATCCACTGGTGCCAAGAAATGTG
AGTTCCATTTGCTGGCATCAAATCTTTCTTGCTTTTTTTCATTTACGGTC
TAATTGTGTAAAAATTGTGCACAAAGGCGTACAAGCATGAGACTTTGCAC
ATTTGTAGTTTAGGAGCCAAAAAATGGATTTAAATCTCAGACCCAAAAAA
TTGGCACCTGTTTGTGTATTTTACAGAACAGAACTGGTTCCCAGGCTAAA
ATGAATTTTTTTCTCCAAAGTATGCCATGTTATATACCGTTCTAAAGCAT
TTTTTATGCTCGTTTAGAAAAACATTACAACCTATATTTGAAAATGAAGC
CAATAAAAGTTCTCGCTGAAGGCTTTTTGAAAAATGACGTAATTGCTGAC
GCATTGATCGCATTGCATTGACATTCAATTCAGTTTAATTCTATCTCACA
TCTTCACATTCAAATTTTCCCAGTTAGCGAGAGCTAATAATTGAGAGCTT
GATTAACTAAAATGAGTAAGACTATGCAAGAATGTATCGTTGGCAAATCT
CTATTCTTAATCATCCAGTAATCCATACCACAGTTCTTATGTACAATGTT
CTGATATTTTTCATTAATTTGTTCTTCCAGCATTCGAAACTGCACCAAGA
AAGAAAACGATTCGTGTAAGTTTTCTTTATTTGCGGCCTTCTAAACTTTT
GGTTCTAAGCCTTATCGTGTATTCTTATATTCGTGGACCGGTGGGTTTTC
CACTAACGTTCGAAAAAATGGATTCCCACATAGAACTCACTTTTGAAAAT
CCTTTCCAATTCACAAGTCTTTCATGTTTTTGATTGATTCGATAAATCTT
TCAATTACTGTACCTTTAAGTTCGACCAGTAGCGACCGTAGTGCAGTGGT
AGAGCATCCGGCTATGGTTCGCAAGGTTGTANTTTCCCTCTTCTGTTGTC
ATTAGGTTATCGAATTCGAAGCAAGGTTATGTTCCACTGAACCATCTGAA
GAAGATACCAAAGAACGCTCAAGGAGACCTTATGAAAACTGTTATCGATG
ATGCCAAGAAGGAAGAATCATCCACTGGTGCCAAGAAATGTGAGTTCCAT
TTGCTGGCATCAAATCTTTCTTGCTTTTTTTCATTTACGGTCTAATTGTG
TAAAAATTGTGCACAAAGGCGTACAAGCATGAGACTTTGCACATTTGTAG
TTTAGGAGCCAAAAAATGGATTTAAATCTCAGACCCAAAAAATTGGCACC
TGTTTGTGTATTTTACAGAACAGAACTGGTTCCCAGGCTAAAATGAATTT
TTTTCTCCAAAGTATGCCATGTTATATACCGTTCTAAAGCATTTTTTATG
CTCGTTTAGAAAAACATTACAACCTATATTTGAAAATGAAGCCAATAAAA
GTTCTCGCTGAAGGCTTTTTGAAAAATGACGTAATTGCTGACGCATTGAT
CGCATTGCATTGACATTCAATTCAGTTTAATTCTATCTCACATCTTCACA
TTCAAATTTTCCCAGTTAGCGAGAGCTAATAATTGAGAGCTTGATTAACT
AAAATGAGTAAGACTATGCAAGAATGTATCGTTGGCAAATCTCTATTCTT
AATCATCCAGTAATCCATACCACAGTTCTTATGTACAATGTTCTGATATT
TTTCATTAATTTGTTCTTCCAGCATTCGAAACTGCACCAAGAAAGAAAAC
GATTCGTGTAAGTTTTCTTTATTTGCGGCCTTCTAAACTTTTGGTTCTAA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012465XLOC_012465Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022240-exon-sc0000408-1575043694:232246..232444TCONS_00022240-exon-sc0000408-1575043694:232246..232444Clytia hemisphaericaexon
TCONS_00022240-exon-sc0000408-1575043694:226527..226607TCONS_00022240-exon-sc0000408-1575043694:226527..226607Clytia hemisphaericaexon
TCONS_00022240-exon-sc0000408-1575043694:225123..225198TCONS_00022240-exon-sc0000408-1575043694:225123..225198Clytia hemisphaericaexon
TCONS_00022240-exon-sc0000408-1575043694:224485..224561TCONS_00022240-exon-sc0000408-1575043694:224485..224561Clytia hemisphaericaexon
TCONS_00022240-exon-sc0000408-1575043694:224121..224212TCONS_00022240-exon-sc0000408-1575043694:224121..224212Clytia hemisphaericaexon
TCONS_00022240-exon-sc0000408-1575043694:223137..223248TCONS_00022240-exon-sc0000408-1575043694:223137..223248Clytia hemisphaericaexon
TCONS_00022240-exon-sc0000408-1575043694:222599..222764TCONS_00022240-exon-sc0000408-1575043694:222599..222764Clytia hemisphaericaexon
TCONS_00022240-exon-sc0000408-1575043694:222106..222223TCONS_00022240-exon-sc0000408-1575043694:222106..222223Clytia hemisphaericaexon
TCONS_00022240-exon-sc0000408-1575043694:221598..221731TCONS_00022240-exon-sc0000408-1575043694:221598..221731Clytia hemisphaericaexon
TCONS_00022240-exon-sc0000408-1575043694:219894..219972TCONS_00022240-exon-sc0000408-1575043694:219894..219972Clytia hemisphaericaexon
TCONS_00022240-exon-sc0000408-1510915933:232246..232444TCONS_00022240-exon-sc0000408-1510915933:232246..232444Clytia hemisphaericaexon
TCONS_00022240-exon-sc0000408-1510915933:226527..226607TCONS_00022240-exon-sc0000408-1510915933:226527..226607Clytia hemisphaericaexon
TCONS_00022240-exon-sc0000408-1510915933:225123..225198TCONS_00022240-exon-sc0000408-1510915933:225123..225198Clytia hemisphaericaexon
TCONS_00022240-exon-sc0000408-1510915933:224485..224561TCONS_00022240-exon-sc0000408-1510915933:224485..224561Clytia hemisphaericaexon
TCONS_00022240-exon-sc0000408-1510915933:224121..224212TCONS_00022240-exon-sc0000408-1510915933:224121..224212Clytia hemisphaericaexon
TCONS_00022240-exon-sc0000408-1510915933:223137..223248TCONS_00022240-exon-sc0000408-1510915933:223137..223248Clytia hemisphaericaexon
TCONS_00022240-exon-sc0000408-1510915933:222599..222764TCONS_00022240-exon-sc0000408-1510915933:222599..222764Clytia hemisphaericaexon
TCONS_00022240-exon-sc0000408-1510915933:222106..222223TCONS_00022240-exon-sc0000408-1510915933:222106..222223Clytia hemisphaericaexon
TCONS_00022240-exon-sc0000408-1510915933:221598..221731TCONS_00022240-exon-sc0000408-1510915933:221598..221731Clytia hemisphaericaexon
TCONS_00022240-exon-sc0000408-1510915933:219894..219972TCONS_00022240-exon-sc0000408-1510915933:219894..219972Clytia hemisphaericaexon
TCONS_00022240-exon-sc0000408-1491911889:232246..232444TCONS_00022240-exon-sc0000408-1491911889:232246..232444Clytia hemisphaericaexon
TCONS_00022240-exon-sc0000408-1491911889:226527..226607TCONS_00022240-exon-sc0000408-1491911889:226527..226607Clytia hemisphaericaexon
TCONS_00022240-exon-sc0000408-1491911889:225123..225198TCONS_00022240-exon-sc0000408-1491911889:225123..225198Clytia hemisphaericaexon
TCONS_00022240-exon-sc0000408-1491911889:224485..224561TCONS_00022240-exon-sc0000408-1491911889:224485..224561Clytia hemisphaericaexon
TCONS_00022240-exon-sc0000408-1491911889:224121..224212TCONS_00022240-exon-sc0000408-1491911889:224121..224212Clytia hemisphaericaexon
TCONS_00022240-exon-sc0000408-1491911889:223137..223248TCONS_00022240-exon-sc0000408-1491911889:223137..223248Clytia hemisphaericaexon
TCONS_00022240-exon-sc0000408-1491911889:222599..222764TCONS_00022240-exon-sc0000408-1491911889:222599..222764Clytia hemisphaericaexon
TCONS_00022240-exon-sc0000408-1491911889:222106..222223TCONS_00022240-exon-sc0000408-1491911889:222106..222223Clytia hemisphaericaexon
TCONS_00022240-exon-sc0000408-1491911889:221598..221731TCONS_00022240-exon-sc0000408-1491911889:221598..221731Clytia hemisphaericaexon
TCONS_00022240-exon-sc0000408-1491911889:219894..219972TCONS_00022240-exon-sc0000408-1491911889:219894..219972Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000408supercontigsc0000408:219894..232444 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.9232	15.6507	9.56422	9.04519	0	0	0	0	0.711819	2.939	3.19225	0.375047	4.68157	2.91712	1.91861	2.91687	10.9914	10.1826	2.0952	6.89064	10.0728	13.9427	13.5594	16.7301	0	0	16.6018	12.7733	3.43772	4.45772
Blast
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BLAST of TCONS_00022240 vs. Swiss-Prot (Human)
Match: SPD2A (SH3 and PX domain-containing protein 2A OS=Homo sapiens GN=SH3PXD2A PE=1 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.780e-73
Identity = 128/318 (40.25%), Postives = 189/318 (59.43%), Query Frame = 2 
Query:  143 VTDANITDIQKRKLPTKHYVYIINVLWNDGKKQVICRRYNAFFELQTSLIDSYPTEAGVHNPTARVIPFLPGKVLFGRSNVREVALKRKDALNEYLEKLVKLPAKISQCKLVLDFLHANEEDVKN--------------LLSGGXXXXXXXXTADSISDPVLLEQYIVLTNFKSKQRNQVSLAAGDTVEVIEKHENGWWFVCIEDEQGWAPSSYLEPLEG---------SSSGEVEE------------------IDVQ-GREGRHICTKPFKSSMPDELNLEVGDVVDILAKCSDGWWKVTLSNSKQGYVPLNHLKK 970
            V DA + D++KR+ P+KHYVYIINV W+D   Q I RRY+ FF+LQ  L+D +P E G  +P  R+IPFLPGK+LF RS++R+VA+KR   ++EY   LV+LP  ISQC  V  F  A  EDV                L S  E  +K    AD+ ++P++LEQY+V++N+K ++ +++SL AG+ V+VIEK+E+GWWFV   +EQGW P++YLE   G         S +GEV +                  ++ Q  RE +++  +P+ S   DE+  E G  V+++ K  +GWW +     K+G+ P ++LKK
Sbjct:    6 VQDATVVDVEKRRNPSKHYVYIINVTWSDSTSQTIYRRYSKFFDLQMQLLDKFPIEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLKPIDEYCRALVRLPPHISQCDEVFRFFEARPEDVNPPKEDYGSSKRKSVWLSSWAESPKKDVTGADATAEPMILEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNGTRDDSDINTSKTGEVSKRRKAHLRRLDRRWTLGGMVNRQHSREEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLG-KEGWAPASYLKK 322
The following BLAST results are available for this feature:
BLAST of TCONS_00022240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPD2A3.780e-7340.25SH3 and PX domain-containing protein 2A OS=Homo sa... [more]
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