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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022339 ID=TCONS_00022339|Name=TCONS_00022339|organism=Clytia hemisphaerica|type=transcript|length=3235bp
GTtcgagatgccttggagtttttacaagatacttcactaattggtcattt
aaagtgatagagatgacgcgttctttagaaaaagtaataagattcttcta
ttacatcttaacgaccaaccaaatcaaataagagcttgtttCAAGAGATA
CCCTTTTTCCCAATCCAAGGGATTTGAGGAATTGCATAACTTGGGAGAGC
ACTCATATAATTGATGATTGTAATattatgtttcaaaaaaaagttatcaa
aactgGATGCTTTATGGATCCATAAATTTCTATAATAATTAAATTGATGA
ATATTATAATATCTGATGATAAACGAGTAAATATAAATAACAAATTGAAA
ATAAGGAGATACATATCAAAGTCACACAATAAAAAGGAAACTTTAATAGC
GAACGGCAGGATGTATGTAGAGTTCGAAACTAGTGATTGGGTTGATATTC
ACAGAATTAAGATAACAATTATGAAAAAATTGTTAAAGTGTAAATTTAAT
GTTAAAGCCGCCTAAAATTTCGTAGAAATGTaattttgaatgctaaaaac
cTCAAGGTATTCGTTGATACTTGTGTGACCGAGTGAAACAGATAATACAG
TTTGATTAAGAATACAGACACCATCGTTGAGTGGTTAAAAAAGAAGATAT
GATAGGTATGGTTAAAGACattcttaaaaaattgaaaatccaataaaata
aaacttaattAAAAAGTTAATGATGTGGTAAAACATCGCCAAACAAACAA
ACATAAATATATCGATAAAAATTGTTATTGTAACTGTTGTCTTTTTAAgg
acttaattttttttttcataaaacgaAAATTAGGCATTGAAATCGTTTGC
TTGTAGTTAATTTTTCTAGAAATAAATAATCTTTGTTATAtctatataaa
aatttaaaaaattctctttgtctctttttattaaaattcaTCTAAATTTA
GAACATCttattttggtaaaaaaatatttaaagatgCATTGGAGGTGCCT
GCTCTCCAAAGTGATATGGTACATATTGTGTGTAAGcaagttgaaaaaaa
ataagacaatttaaAAAACCTTCGTACGTGTGAATCGAAATTGCcatcaa
atttgtcgaaaacACATTCAAGTAAAAAATGCCATCCACTCTAAACTACA
ACATACATCATAGTAGAACTAGtcttgaaataataaaaaaatcttctaaT
TTATACCCTTTCTAAATAGAACCATTTAAAAGtttcttgagaaaaataaa
atgaatctaTAACATTTGGAGGCCAGGTCAGAAAACTTTACAGCTTTGCG
CTGTTTAGAAACGAACTACCTTTAGCTCCATTGGAAAAATTGCCattctg
aaattatttttttcttgctttgtTGAGCTTAAAAGTACAATCTGCTTTTA
AATCAGGGCAACAAACTTATCGCAGGTTTCTAAATATAGTGATTCACCCG
CTCAAAGACAAAGCCGTATATAATCTGCAACGAGAAATACCCCTAGAATT
CTGCAATACCAAACCATTCTCATGCAAACCAACGTGTAAAATTGCTCAGC
AGCATTTCTACAAACAGGGTGAATTTGATTATTCAAGATGGAGTAACTGC
ACTGAAACAGTAAGATGTCAAAAGATGACTTTCAATCATATCGACTTTCC
CACAAACCCACACTCCGTTCACTCAGAATCACTGTCAGCGGTAAAATCGg
agaagaatttttttgttttaatctcCTCCTCGGTGAGTTCAGTGGGCGGT
TTCTCGTCAATCGGCGGTTTATTGCTAGACACGTGCTTTATGGATTTTCG
CTTAAGATCTATGTGTTTCTGTGAGTCCTTCTTCTCTGAGTCCTTCTTCT
TCTGATTGTCTTGAATTTTACGCATCAGTGAGCTGGGTGCTAACAGAGCA
GGTGCAGCGAATTTATTCCTGCGCGCTTCCAATCGTTTACGCTGATCGAG
GGTGATGTCGATGGATTTGGCCGTTCCAGAAAACTCTTGATCTTTCTCAT
TGGCCACTTCTTGTTGAGAGACGGCTGCGAGACCTCGATCACGTGTGCCA
TTATTCAATCTGACAGGCGATAATTTCCGATCCTTCGATTTGTCAAACGA
ATCGCGATCTTCATCTTTCTTTCGGCCAGAACCGGAAGAGAGGCCACGAT
CTTTCAAGGAGGAGACTCCTCTTTCTCGAGCTTTCTTCCACGAGGAGGTC
TCATTTTCATCACGATGACGGTCTCTGGAGGAGGATGAGCCATAAGAATG
GCGGCTGCGTTTTGACGAAGAAGAGGAGCGATGGGAGGAGGAGCGGCGGT
GGTGGTGGTCATCGCTTTGGCGACGTCGCTTTTCCGATCGGCTGTGCGAA
TAATCGTTGTCATCAGAATCAACATCTCGCTTTCGTTTCTGTGACAACAA
GCGCTGGTATTGGTAGTTGGCATCATCTGAATCACTATCGTCATCCTCGT
CACTGGAGTATTCCACGCATCCATCTTTCTTCAATTTATCCAACATGTCG
ATGATAGAGGTGGCCAGTTTGATGTTCCCTTTCTCGATCAGATGCAAATG
GTCGGTGAAATAAAGCGATTCATCCAGCTGACCATCCTCCACGACCCAAT
CATCATCCTGCTTCATGTAATAAACTCCCTCAAAGTCTCTACGACACATC
TTTTTCACTATCTTGTTCACTTTCTTGATCTTATCACGTCGATAAGAGGA
CTGGTGTAAATCCCTTGGTAACAAACCAGTCACTACCACTTTCAGGTCCG
GAACTTTCTCTTGAAACGTGACGGCGATGGAGAGAATACCATTGGCGATG
CAGGTGGGCGTATCACGGTCGATGTTGTTGGTACCGCAATGCAAAACAAC
GAACTTGGTGTTGGGTGAGATGTCGAGGTTTTCAGCGCGCCACAACACGT
GCTGCGTTCGATCGCCTCCGATACCGAGGTTGAGGGCGTGCAACGGAGCG
AaaaactttctccaaatatcACTGTACCGAGAAAGACCAGCAACGATAGA
GTCTCCACATAAAATGTATTCTAGATTGGATCGTTTGGCCATGGATTCAT
GTTTCTCATGCATGTTATACCATCCAGCTTTGTTGTCTCTACCGACAGGT
CGTGTTGCAGGCGATGTGTTATAGCCTGAGAGGTCGAGTTTGGATGAGAA
GGAGCCATTGTTGCTGTCGTATGATCGGTTTGACGGTGATTTGATGGGCG
TTGAATACGAAGACATCTTTGATGAATAGACCGCC Run BLAST on NCBI transcript from alignment at sc0000411:195127..199391- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022339 ID=TCONS_00022339|Name=TCONS_00022339|organism=Clytia hemisphaerica|type=transcript|length=4265bp|location=Sequence derived from alignment at sc0000411:195127..199391- (Clytia hemisphaerica)
GTTCGAGATGCCTTGGAGTTTTTACAAGATACTTCACTAATTGGTCATTT
AAAGTGATAGAGATGACGCGTTCTTTAGAAAAAGTAATAAGATTCTTCTA
TTACATCTTAACGACCAACCAAATCAAATAAGAGCTTGTTTCAAGAGATA
CCCTTTTTCCCAATCCAAGGGATTTGAGGAATTGCATAACTTGGGAGAGC
ACTCATATAATTGATGATTGTAATATTATGTTTCAAAAAAAAGTTATCAA
AACTGGATGCTTTATGGATCCATAAATTTCTATAATAATTAAATTGATGA
ATATTATAATATCTGATGATAAACGAGTAAATATAAATAACAAATTGAAA
ATAAGGAGATACATATCAAAGTCACACAATAAAAAGGAAACTTTAATAGC
GAACGGCAGGATGTATGTAGAGTTCGAAACTAGTGATTGGGTTGATATTC
ACAGAATTAAGATAACAATTATGAAAAAATTGTTAAAGTGTAAATTTAAT
GTTAAAGCCGCCTAAAATTTCGTAGAAATGTAATTTTGAATGCTAAAAAC
CTCAAGGTATTCGTTGATACTTGTGTGACCGAGTGAAACAGATAATACAG
TTTGATTAAGAATACAGACACCATCGTTGAGTGGTTAAAAAAGAAGATAT
GATAGGTATGGTTAAAGACATTCTTAAAAAATTGAAAATCCAATAAAATA
AAACTTAATTAAAAAGTTAATGATGTGGTAAAACATCGCCAAACAAACAT
AAATATATCGATAAAAATTGTTATTGTAACTGTTGTCTTTTTAAGGACTT
AATTTTTTTTTTCATAAAACGAAAATTAGGCATTGAAATCGTTTGCTTGT
AGTTAATTTTTCTAGAAATAAATAATCTTTGTTATATCTATATAAAAATT
TAAAAAATTCTCTTTGTCTCTTTTTATTAAAATTCATCTAAATTTAGAAC
ATCTTATTTTGGTAAAAAAATATTTAAAGATGCATTGGAGGTGCCTGCTC
TCCAAAGTGATATGGTACATATTGTGTGTAAGCAAGTTGAAAAAAAATAA
GACAATTTAAAAAACCTTCGTACGTGTGAATCGAAATTGCCATCAAATTT
GTCGAAAACACATTCAAGTAAAAAATGCCATCCACTCTAAACTACAACAT
ACATCATAGTAGAACTAGTCTTAAAATAATAAAAAAATCTTCTAATTTAT
ACCCTTTCTAAATAGAACCATTTAAAAGGCTTCTTGAGAAAAATAAAATG
AATCTATAACATTTGGAGGCCAGGTCAGAAAACTTTACAGCTTTGCGCTG
TATAAACGAACTACCTTTAGCTCCATTGTAAAAATTGCCATTCTGAAATA
ATTTTTTTCTTGCTTTGTTGAGCTTAAAAGTACAATCTGCTTTTAAATCA
GGGCAACAAACTTATCGCAGGTTTCTAAATATAGTGATTCACNATAGCGA
ACGGCAGGATGTATGTAGAGTTCGAAACTAGTGCTTGGGTTGATATTCAC
AGAATTAAGATAGCAATTATGAAAAAATTGTTAAAGTGTAAGTTTAATAA
AATTTCGTAAAAATTTAATTTTGAATGCTAAAAACCTCAAGGTATTCGTT
GATACTTGTGTGACAGAGTGAAACAGATAATACAGTTTGATTAAGAATAC
AGACACCATCGTTGAGTGGTTAAAAAGAAGATATGATAGGTATGGTTAAA
GACATTCTTAAAAAATTGAAAATCCATTAAAATAAAACTTAATTAAAAAG
TTAATGATGTGGTAAAACATGGCCAAACAAACATAAATATATCGATAAAA
ATTGTTATTGTAACTGTTGTCTTTTTAAGGACTTAATTTTTTTTTTCATA
AAACGAAAATTAGGCATTGAAATCGTTTGCTTGTAGTTAATTTTTCTAGA
AATAAATAATCTTTGTTATATCTATATAAAAATTTAAAAAATTCTCTTTG
TCTCTTTTTATTAAAATTCATCTAAATTTAGAACATCTTATTTTGGTAAA
AAAATATTTAAAGATGCATTGGAGGTGCCTGCTCTCCAAAGTGATATGGT
ACATATTGTGTGTAAGCAAGTTGAAAAAAAATAAGACAATTTAAAAAACC
TTCGTACGTGTGAATCGAAATTGCCATCAAATTTGTCGAAAACACATTCA
AGTAAAAAATGCCATCCACTCTAAACTACAACATACATCATAGTAGAACT
AGTCTTGAAATAATAAAAAAATCTTCTAATTTATACCCTTTCTAAATAGA
ACCATTTAAAAGTTTCTTGAGAAAAATAAAATGAATCTATAACATTTGGA
GGCCAGGTCAGAAAACTTTACAGCTTTGCGCTGTTTAGAAACGAACTACC
TTTAGCTCCATTGGAAAAATTGCCATTCTGAAATTATTTTTTTCTTGCTT
TGTTGAGCTTAAAAGTACAATCTGCTTTTAAATCAGGGCAACAAACTTAT
CGCAGGTTTCTAAATATAGTGATTCACCCGCTCAAAGACAAAGCCGTATA
TAATCTGCAACGAGAAATACCCCTAGAATTCTGCAATACCAAACCATTCT
CATGCAAACCAACGTGTAAAATTGCTCAGCAGCATTTCTACAAACAGGGT
GAATTTGATTATTCAAGATGGAGTAACTGCACTGAAACAGTAAGATGTCA
AAAGATGACTTTCAATCATATCGACTTTCCCACAAACCCACACTCCGTTC
ACTCAGAATCACTGTCAGCGGTAAAATCGGAGAAGAATTTTTTTGTTTTA
ATCTCCTCCTCGGTGAGTTCAGTGGGCGGTTTCTCGTCAATCGGCGGTTT
ATTGCTAGACACGTGCTTTATGGATTTTCGCTTAAGATCTATGTGTTTCT
GTGAGTCCTTCTTCTCTGAGTCCTTCTTCTTCTGATTGTCTTGAATTTTA
CGCATCAGTGAGCTGGGTGCTAACAGAGCAGGTGCAGCGAATTTATTCCT
GCGCGCTTCCAATCGTTTACGCTGATCGAGGGTGATGTCGATGGATTTGG
CCGTTCCAGAAAACTCTTGATCTTTCTCATTGGCCACTTCTTGTTGAGAG
ACGGCTGCGAGACCTCGATCACGTGTGCCATTATTCAATCTGACAGGCGA
TAATTTCCGATCCTTCGATTTGTCAAACGAATCGCGATCTTCATCTTTCT
TTCGGCCAGAACCGGAAGAGAGGCCACGATCTTTCAAGGAGGAGACTCCT
CTTTCTCGAGCTTTCTTCCACGAGGAGGTCTCATTTTCATCACGATGACG
GTCTCTGGAGGAGGATGAGCCATAAGAATGGCGGCTGCGTTTTGACGAAG
AAGAGGAGCGATGGGAGGAGGAGCGGCGGTGGTGGTGGTCATCGCTTTGG
CGACGTCGCTTTTCCGATCGGCTGTGCGAATAATCGTTGTCATCAGAATC
AACATCTCGCTTTCGTTTCTGTGACAACAAGCGCTGGTATTGGTAGTTGG
CATCATCTGAATCACTATCGTCATCCTCGTCACTGGAGTATTCCACGCAT
CCATCTTTCTTCAATTTATCCAACATGTCGATGATAGAGGTGGCCAGTTT
GATGTTCCCTTTCTCGATCAGATGCAAATGGTCGGTGAAATAAAGCGATT
CATCCAGCTGACCATCCTCCACGACCCAATCATCATCCTGCTTCATGTAA
TAAACTCCCTCAAAGTCTCTACGACACATCTTTTTCACTATCTTGTTCAC
TTTCTTGATCTTATCACGTCGATAAGAGGACTGGTGTAAATCCCTTGGTA
ACAAACCAGTCACTACCACTTTCAGGTCCGGAACTTTCTCTTGAAACGTG
ACGGCGATGGAGAGAATACCATTGGCGATGCAGGTGGGCGTATCACGGTC
GATGTTGTTGGTACCGCAATGCAAAACAACGAACTTGGTGTTGGGTGAGA
TGTCGAGGTTTTCAGCGCGCCACAACACGTGCTGCGTTCGATCGCCTCCG
ATACCGAGGTTGAGGGCGTGCAACGGAGCGAAAAACTTTCTCCAAATATC
ACTGTACCGAGAAAGACCAGCAACGATAGAGTCTCCACATAAAATGTATT
CTAGATTGGATCGTTTGGCCATGGATTCATGTTTCTCATGCATGTTATAC
CATCCAGCTTTGTTGTCTCTACCGACAGGTCGTGTTGCAGGCGATGTGTT
ATAGCCTGAGAGGTCGAGTTTGGATGAGAAGGAGCCATTGTTGCTGTCGT
ATGATCGGTTTGACGGTGATTTGATGGGCGTTGAATACGAAGACATCTTT
GATGAATAGACCGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022339-exon-sc0000411-1575043694:198644..199391 | TCONS_00022339-exon-sc0000411-1575043694:198644..199391 | Clytia hemisphaerica | exon |
| TCONS_00022339-exon-sc0000411-1575043694:195127..197613 | TCONS_00022339-exon-sc0000411-1575043694:195127..197613 | Clytia hemisphaerica | exon |
| TCONS_00022339-exon-sc0000411-1510915933:198644..199391 | TCONS_00022339-exon-sc0000411-1510915933:198644..199391 | Clytia hemisphaerica | exon |
| TCONS_00022339-exon-sc0000411-1510915933:195127..197613 | TCONS_00022339-exon-sc0000411-1510915933:195127..197613 | Clytia hemisphaerica | exon |
| TCONS_00022339-exon-sc0000411-1491911889:198644..199391 | TCONS_00022339-exon-sc0000411-1491911889:198644..199391 | Clytia hemisphaerica | exon |
| TCONS_00022339-exon-sc0000411-1491911889:195127..197613 | TCONS_00022339-exon-sc0000411-1491911889:195127..197613 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000411 | supercontig | sc0000411:195127..199391 - |
Blast
BLAST of TCONS_00022339 vs. Swiss-Prot (Human)
Match: PA1B3 (Platelet-activating factor acetylhydrolase IB subunit gamma OS=Homo sapiens GN=PAFAH1B3 PE=1 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.812e-25 Identity = 72/199 (36.18%), Postives = 104/199 (52.26%), Query Frame = -2
Query: 2539 SPATRPVGRDNKAG---WYNMHEKHESMAKRSNLEYILCGDSIVAGLSRYSDIWRKFFAPLHALNLGIGGDRTQHVLWRAENLDISP-NTKFVVLHCGTNNIDRDTPTCIANGILSIAVTFQEKVPDLKVVVTGLLPRDLHQSSYRRDXXXXXXXXXXKMCRRDFEG---VYYMKQDDDWVVEDGQLDESLYFTDHLHL 3114
+PA++P + G W ++H + + +K E + GDS+V L +IWR+ F+PLHALN GIGGD TQHVLWR EN ++ K VV+ GTNN T + GI +I E+ P +VVV GLLPR H + R N+ V ++ R G +++ D +V DG + + D+LHL
Sbjct: 6 NPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQ-LMHQCEIWRELFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNN-HGHTAEQVTGGIKAIVQLVNERQPQARVVVLGLLPRGQHPNPLRE-----KNRQVNELVRAALAGHPRAHFLDADPGFVHSDGTISHHDMY-DYLHL 196
The following BLAST results are available for this feature:
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