TCONS_00022340 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022340
Unique NameTCONS_00022340
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1083

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022340 ID=TCONS_00022340|Name=TCONS_00022340|organism=Clytia hemisphaerica|type=transcript|length=1083bp
NNATGAAATAACTTCTTCTTTAGAACGAGCGTACAGAGCGAGACTTGATG
AAATAACTTCTTCTTTAGAACGAGCGTACAGAGCGAGACTTGATGAAGCA
AGAACAGGACGCTGCATACCACGAGTCACTAGCCGCTGATCGTGCGAAGG
TTCAAGCAGAAAAAGAACGACATAGCGAAGAAATGGAGAAAATGAGACAA
GAACAAGAAGTCCAAGATATGAGAGAAGCCGAAAGGGCGTCTTGTGAGGA
ACAATTACCAGATGAACCACCCAGCAGCGCGAAAAACACCACCAATATTC
GATTCCGCTTTCCCAACGGTGAAACAGAACAACGAAGATTTTATGAGCAC
CAAAAACTAAATGTTATCTTCATGTACGTCACTTCGAAAGGGTTCAGTAT
GAACTCCAACGAACACCGAATCGTCACCAACTTCCCACGTAGACAGCTCT
CGGAAGATTCATTGCAAAGGACGCTGAAAGAATTGAAGCTGTGCCCGCGA
GAGAATCTTTTTGTCGAAGAAATCTAATAAAACTTCATGCAGTTAGATTG
TTGTAAAAATTCACAATGAAAATTCTTATTTATGTTTTTGCGGATTCGTg
gagtcagaaaaaaacaacacaaaaaactttttagataaaaaagattctgt
ttaaaaatagtttgatagtttaattttttattaggATTTTTTACGAAAGG
TGCCCAATTTAtgtattattatttttgaagATGACTTTTCAGTTTCGTTT
TGTTTTATAAAAGGTGGAAGTTTTCTTCGTGTTTCAATGACTTGCGAAAT
ACCTGATAAGTTGCAAATTGCTCATGTTTTCTCTCCAATCGCAGATAAGA
CATTTTTTAGATACTCTTCCATAGCGAACTTAAAGAacataaaattttct
ttccattcTTGGAGTTACCTCGGACTTTAGAGAGCGGATTAAGGTTAGTG
AAGTCATTCTTCTTCATTCCGATTTGTATTAATAGTAGTGAAGTTTAGAA
CCCTTATAAATATGGATatgtttttataatttataCATACTTTACTTTGT
AGTTTAaccaacaaaaacatttttagaacaATA
Run BLAST on NCBI

protein sequence of TCONS_00022340-protein

>TCONS_00022340-protein ID=TCONS_00022340-protein|Name=TCONS_00022340-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
MKQEQDAAYHESLAADRAKVQAEKERHSEEMEKMRQEQEVQDMREAERAS
CEEQLPDEPPSSAKNTTNIRFRFPNGETEQRRFYEHQKLNVIFMYVTSKG
FSMNSNEHRIVTNFPRRQLSEDSLQRTLKELKLCPRENLFVEEI
Run BLAST on NCBI

transcript from alignment at sc0000411:209627..212795-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022340 ID=TCONS_00022340|Name=TCONS_00022340|organism=Clytia hemisphaerica|type=transcript|length=3169bp|location=Sequence derived from alignment at sc0000411:209627..212795- (Clytia hemisphaerica)
NNATGAAATAACTTCTTCTTTAGAACGAGCGTACAGAGCGAGACTTGATG
AAATAACTTCTTCTTTAGAACGAGCGTACAGAGCGAGACTTGATGAAGCA
AGAACAGGACGCTGCATACCACGAGTCACTAGCCGCTGATCGTGCGAAGG
TTCAAGCAGAAAAAGAACGACATAGCGAAGAAATGGAGAAAATGAGACAA
GAACAAGAAGTCCAAGATATGAGAGAAGTAAGTTCTGTTCATCAATGTTT
TTCTAGTTTTTCTGTTTCTCTTTGTTTTTTAGAACTGTCACGTCCCATTT
TGGCAGATTGCGGTTATTTTGTTTTTTATACCGTTTTATATCCGTGATTT
AAGTGATTGCTGCCAATGTATTGAAAACCTTCTCCGTTAAAGAATCTCGA
ACGAATGCAACCCAAAAACCAAAAGAAGCCTTCTTCGATCACGATATTTG
ATTGATAATCGTTAACTGTTGAAGTAATTGTCTGAAATNCCCGATGTATT
GAAAACCTTCTCCGTTAAAGAATTTCGAACGAATGCAACCCAAAAACCAA
AAGAAGCCTTCTTCGATCACGATATTTGATTGATAATCGTTAACTGTTGA
AGTAATTGTCTGAAATTCGTTTTCACTACAGGCCGAAAGGGCGTCTTGTG
AGGAACAATTACCAGATGAACCACCCAGCAGCGCGAAAAACACCACCAAT
ATTCGATTCCGCTTTCCCAACGGTGAAACAGAACAACGAAGATTTTATGA
GCACCAAAAACTAAATGTAAGTCCAGTCACATCCAAGTATCTTACTAGAA
AATATAACGAACGCGTTTGAGAAGAAAACGTTGATGTACTTTGTAATAAC
CAACTTAGAACTTATCGAAGTATAGCCGAAAGGGATAAAGGTGAATCTTT
AACCTTTCCCACGCAAGAGAAGTTATTTCTGAAAGATGTGTGCCGCGTTT
TGAACGACAGATTGGATTCAGAGCTTTCCCTGGTTACGGATATTCATTTT
TTAAGATATTTTGCCGTAAATGTTACTTCCAATCTAGCTGATGTATGAAA
AACACGTAAGTAGCTTAAAAGGTAGCCCGGGGTCCACTCAAAGCTTTTTT
ATAGACTGGATGGCGCGATTAAGTAGCCCGGTGGTATATGTAATATGCTT
TCGTTTAGGCGAACTGTTAAACAGTCCACCAGATTTTAGTTGTTTTTGGA
AGGTAAAAACAGCATGAAGCAATGATTTTATTTGAGAATAAGGGATCTGT
TATTGATGTTTTTTTCTCATTTTTGATTATATTTTTCAACTTCAAGTAGT
TTTACTGTTATTTGGATTTTAAACGATTTTCGTATAACCTACACATTTTA
TATAAGCAACTCAAATTTTCGGGTTGCTTAACATTCTAGCTCATTTTCTA
AAAACTTGCTTCGACCATATTTATGCTTATTGAATCAAGAGCTATCGTTT
GTCGTCATTCTTTAATGGGATAAACTTTCGCGGGGATTAAATTTCGCGGA
TTTCGCGGATTTGGGTGTCATCCGCGAAGATCCTCGAAATTAAGTCCCAT
CGGAAATTTGGAAGGGCCTCATCCGCGAAATATTTCTAAACAATACTCAA
AATATGTCAAATAAATACTATTTGAATGGTTACTTGCATCAAAGAAGCTC
AAATAATGTGTATTTCAACAACCAAAATGCATGAAAAGAAATTTTTGAAT
CTCGTGGATAGGCTCAACCGTGAAATTTAATCCCCGCGAAAGTTTATCTC
ATTAAAGTAGTTAGATAATCACCCCAAAATCACTTAGAATTGACCCCTCC
ATTTTATGGAATTTCTCCCAGAGTACCACCTCCTGCTTATTCCACCCCCT
CCCTACAATTAAGCACAAAAGAGTAATAGGGAAGTATCAAATTTTGACGA
TCTTTTTTCTTTATTGAATTTGTAGGTTATCTTCATGTACGTCACTTCGA
AAGGGTTCAGTATGAACTCCAACGAACACCGAATCGTCACCAACTTCCCA
CGTAGACAGGTATGTACTCATCAGGGGTTACAATCGAGATGTGTTCGCCA
ACAACCTATGAACTAATGAATAATCTCCTTTAAAAATTCTTTCACGTTCG
TGGATTGTATTTTTAGCATTTCAGTTCTCTTTGGAATCGTTTCAATAGCT
TGAAATTTACAAATAATTGGTAAATGTAATGTCCGAACAGATTCTGATAC
TCCGCACATGGCACGTACTCGCTATAAAGGCTATGGCTCCGTAAGAAAAT
CTGCCAGGTTGGCACACCGCTTTGAAGTTTTTTCACCCAGATTTGAGATG
AAAATTCAATGAGTTTTCTATCATATACGTAAACAATACATAAACATTAA
AACCCAGACGCTTTCGCTTTCAAGCAAAAGGCAAAGCGGTTTCTGCTGAA
CAATAAGGTCAAATTGTCATACCCCTTTAGGACAGAGCGTGGTATAGGCA
GCATGGATATTAATATTTTCGTTTGGGTTGTAAATTGTATTTGCTGCTCC
ACAACTTATAGTTACATTTGACCTTGTTTTAGCTCTCGGAAGATTCATTG
CAAAGGACGCTGAAAGAATTGAAGCTGTGCCCGCGAGAGAATCTTTTTGT
CGAAGAAATCTAATAAAACTTCATGCAGTTAGATTGTTGTAAAAATTCAC
AATGAAAATTCTTATTTATGTTTTTGCGGATTCGTGGAGTCAGAAAAAAA
CAACACAAAAAACTTTTTAGATAAAAAAGATTCTGTTTAAAAATAGTTTG
ATAGTTTAATTTTTTATTAGGATTTTTTACGAAAGGTGCCCAATTTATGT
ATTATTATTTTTGAAGATGACTTTTCAGTTTCGTTTTGTTTTATAAAAGG
TGGAAGTTTTCTTCGTGTTTCAATGACTTGCGAAATACCTGATAAGTTGC
AAATTGCTCATGTTTTCTCTCCAATCGCAGATAAGACATTTTTTAGATAC
TCTTCCATAGCGAACTTAAAGAACATAAAATTTTCTTTCCATTCTTGGAG
TTACCTCGGACTTTAGAGAGCGGATTAAGGTTAGTGAAGTCATTCTTCTT
CATTCCGATTTGTATTAATAGTAGTGAAGTTTAGAACCCTTATAAATATG
GATATGTTTTTATAATTTATACATACTTTACTTTGTAGTTTAACCAACAA
AAACATTTTTAGAACAATA

Coding sequence (CDS) from alignment at sc0000411:209627..212795-

>TCONS_00022340 ID=TCONS_00022340|Name=TCONS_00022340|organism=Clytia hemisphaerica|type=CDS|length=1740bp|location=Sequence derived from alignment at sc0000411:209627..212795- (Clytia hemisphaerica)
CTCTCGGAAGATTCATTGCAAAGGACGCTGAAAGAATTGAAGCTGTGCCC
GCGAGAGAATCTTTTTGTCGAAGAAATCTAAGTTATCTTCATGTACGTCA
CTTCGAAAGGGTTCAGTATGAACTCCAACGAACACCGAATCGTCACCAAC
TTCCCACGTAGACAGGCCGAAAGGGCGTCTTGTGAGGAACAATTACCAGA
TGAACCACCCAGCAGCGCGAAAAACACCACCAATATTCGATTCCGCTTTC
CCAACGGTGAAACAGAACAACGAAGATTTTATGAGCACCAAAAACTAAAT
ATGAAGCAAGAACAGGACGCTGCATACCACGAGTCACTAGCCGCTGATCG
TGCGAAGGTTCAAGCAGAAAAAGAACGACATAGCGAAGAAATGGAGAAAA
TGAGACAAGAACAAGAAGTCCAAGATATGAGAGAACTCTCGGAAGATTCA
TTGCAAAGGACGCTGAAAGAATTGAAGCTGTGCCCGCGAGAGAATCTTTT
TGTCGAAGAAATCTAAGTTATCTTCATGTACGTCACTTCGAAAGGGTTCA
GTATGAACTCCAACGAACACCGAATCGTCACCAACTTCCCACGTAGACAG
GCCGAAAGGGCGTCTTGTGAGGAACAATTACCAGATGAACCACCCAGCAG
CGCGAAAAACACCACCAATATTCGATTCCGCTTTCCCAACGGTGAAACAG
AACAACGAAGATTTTATGAGCACCAAAAACTAAATATGAAGCAAGAACAG
GACGCTGCATACCACGAGTCACTAGCCGCTGATCGTGCGAAGGTTCAAGC
AGAAAAAGAACGACATAGCGAAGAAATGGAGAAAATGAGACAAGAACAAG
AAGTCCAAGATATGAGAGAACTCTCGGAAGATTCATTGCAAAGGACGCTG
AAAGAATTGAAGCTGTGCCCGCGAGAGAATCTTTTTGTCGAAGAAATCTA
AGTTATCTTCATGTACGTCACTTCGAAAGGGTTCAGTATGAACTCCAACG
AACACCGAATCGTCACCAACTTCCCACGTAGACAGGCCGAAAGGGCGTCT
TGTGAGGAACAATTACCAGATGAACCACCCAGCAGCGCGAAAAACACCAC
CAATATTCGATTCCGCTTTCCCAACGGTGAAACAGAACAACGAAGATTTT
ATGAGCACCAAAAACTAAATATGAAGCAAGAACAGGACGCTGCATACCAC
GAGTCACTAGCCGCTGATCGTGCGAAGGTTCAAGCAGAAAAAGAACGACA
TAGCGAAGAAATGGAGAAAATGAGACAAGAACAAGAAGTCCAAGATATGA
GAGAACTCTCGGAAGATTCATTGCAAAGGACGCTGAAAGAATTGAAGCTG
TGCCCGCGAGAGAATCTTTTTGTCGAAGAAATCTAAGTTATCTTCATGTA
CGTCACTTCGAAAGGGTTCAGTATGAACTCCAACGAACACCGAATCGTCA
CCAACTTCCCACGTAGACAGGCCGAAAGGGCGTCTTGTGAGGAACAATTA
CCAGATGAACCACCCAGCAGCGCGAAAAACACCACCAATATTCGATTCCG
CTTTCCCAACGGTGAAACAGAACAACGAAGATTTTATGAGCACCAAAAAC
TAAATATGAAGCAAGAACAGGACGCTGCATACCACGAGTCACTAGCCGCT
GATCGTGCGAAGGTTCAAGCAGAAAAAGAACGACATAGCGAAGAAATGGA
GAAAATGAGACAAGAACAAGAAGTCCAAGATATGAGAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012526XLOC_012526Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022340-exon-sc0000411-1575043694:212569..212795TCONS_00022340-exon-sc0000411-1575043694:212569..212795Clytia hemisphaericaexon
TCONS_00022340-exon-sc0000411-1575043694:212030..212164TCONS_00022340-exon-sc0000411-1575043694:212030..212164Clytia hemisphaericaexon
TCONS_00022340-exon-sc0000411-1575043694:210787..210870TCONS_00022340-exon-sc0000411-1575043694:210787..210870Clytia hemisphaericaexon
TCONS_00022340-exon-sc0000411-1575043694:209627..210263TCONS_00022340-exon-sc0000411-1575043694:209627..210263Clytia hemisphaericaexon
TCONS_00022340-exon-sc0000411-1510915933:212569..212795TCONS_00022340-exon-sc0000411-1510915933:212569..212795Clytia hemisphaericaexon
TCONS_00022340-exon-sc0000411-1510915933:212030..212164TCONS_00022340-exon-sc0000411-1510915933:212030..212164Clytia hemisphaericaexon
TCONS_00022340-exon-sc0000411-1510915933:210787..210870TCONS_00022340-exon-sc0000411-1510915933:210787..210870Clytia hemisphaericaexon
TCONS_00022340-exon-sc0000411-1510915933:209627..210263TCONS_00022340-exon-sc0000411-1510915933:209627..210263Clytia hemisphaericaexon
TCONS_00022340-exon-sc0000411-1491911889:212569..212795TCONS_00022340-exon-sc0000411-1491911889:212569..212795Clytia hemisphaericaexon
TCONS_00022340-exon-sc0000411-1491911889:212030..212164TCONS_00022340-exon-sc0000411-1491911889:212030..212164Clytia hemisphaericaexon
TCONS_00022340-exon-sc0000411-1491911889:210787..210870TCONS_00022340-exon-sc0000411-1491911889:210787..210870Clytia hemisphaericaexon
TCONS_00022340-exon-sc0000411-1491911889:209627..210263TCONS_00022340-exon-sc0000411-1491911889:209627..210263Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022340-proteinTCONS_00022340-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000411supercontigsc0000411:209627..212795 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
53.9473	48.4508	136.504	145.553	38.3735	29.4149	34.8615	37.2296	26.3389	33.4301	26.2381	16.7613	15.2801	14.2144	16.3192	17.983	26.5416	21.5823	10.7877	19.7323	15.5811	14.9318	21.1303	23.1457	41.9261	39.8685	40.7989	45.7396	36.2688	31.1683
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001012UBX_dom
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00022340 vs. Swiss-Prot (Human)
Match: FAF1 (FAS-associated factor 1 OS=Homo sapiens GN=FAF1 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 2.434e-24
Identity = 64/153 (41.83%), Postives = 101/153 (66.01%), Query Frame = 3 
Query:   69 NERTERDLMKQEQDAAYHESLAADRAKVQAEKERHSEE--MEKMRQEQEVQDMREAERASCEEQLPDEPP-SSAKNTTNIRFRFPNGETEQRRFYEHQKLNVIFMYVTSKGFSMNSNEHRIVTNFPRRQLSEDSLQRTLKELKLCPRENLFVE 518
            +ER  R+ +K+EQD AY  SL ADRAK +A +   +E+  +E++R+EQE +  REA R S E+ LP EP   +A+  + +R R P+GE  +RRF    KL ++F +V SKGF    +E+++++ FPRR +++    ++L E+KL P+E LF+E
Sbjct:  499 DEREARENVKREQDEAYRLSLEADRAKREAHEREMAEQFRLEQIRKEQEEE--REAIRLSLEQALPPEPKEENAEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASKGFPW--DEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 647
The following BLAST results are available for this feature:
BLAST of TCONS_00022340 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FAF12.434e-2441.83FAS-associated factor 1 OS=Homo sapiens GN=FAF1 PE... [more]
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