TCONS_00022347 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022347
Unique NameTCONS_00022347
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length462

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022347 ID=TCONS_00022347|Name=TCONS_00022347|organism=Clytia hemisphaerica|type=transcript|length=462bp
CTTTTTCACTGTCCGTTGCTGAGATTATGATCCAAAGGACAAAAGGAAGa
ctaggaaaagaaaaattacgtGACTGACTAAGAATCCCCCTTCACATTAA
TCAcgataaaataataaaatatggCTTTCAGCTAGTTTcttttttaagcg
ttgtaatcTTTTTCCTTCAGCTTGCTTTTTCAAGCGTTTTTTCTCCATCT
CAGGATCAGCTCTCGATCGCAAAcgtgttaatttttttcgaagATTATCG
GATGCCCGGTATTCAGCTTTATGTGTTTCTCTATACTTTTTGCAACGTTC
GGCGACGGAgagtttattttctttccttggTCTTCCCATGATGATGTTCA
CAGAACGAGATTCGAAGATTGAATGTTTAGCTCGAGAAGTTTTCGCGCCT
AAAAGCACTGCTACGAATTGACGTCACAATACTGGTCCGCGTGCGCATTA
GAAGGTTCCTTC
Run BLAST on NCBI

transcript from alignment at sc0000411:76234..76695

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022347 ID=TCONS_00022347|Name=TCONS_00022347|organism=Clytia hemisphaerica|type=transcript|length=462bp|location=Sequence derived from alignment at sc0000411:76234..76695 (Clytia hemisphaerica)
GAAGGAACCTTCTAATGCGCACGCGGACCAGTATTGTGACGTCAATTCGT
AGCAGTGCTTTTAGGCGCGAAAACTTCTCGAGCTAAACATTCAATCTTCG
AATCTCGTTCTGTGAACATCATCATGGGAAGAccaaggaaagaaaataaa
ctcTCCGTCGCCGAACGTTGCAAAAAGTATAGAGAAACACATAAAGCTGA
ATACCGGGCATCCGATAATcttcgaaaaaaattaacacgTTTGCGATCGA
GAGCTGATCCTGAGATGGAGAAAAAACGCTTGAAAAAGCAAGCTGAAGGA
AAAAgattacaacgcttaaaaaagAAACTAGCTGAAAGccatattttatt
attttatcgTGATTAATGTGAAGGGGGATTCTTAGTCAGTCacgtaattt
ttcttttcctagtCTTCCTTTTGTCCTTTGGATCATAATCTCAGCAACGG
ACAGTGAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012532XLOC_012532Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022347-exon-sc0000411-1491911889:76234..76695TCONS_00022347-exon-sc0000411-1491911889:76234..76695Clytia hemisphaericaexon
TCONS_00022347-exon-sc0000411-1510915933:76234..76695TCONS_00022347-exon-sc0000411-1510915933:76234..76695Clytia hemisphaericaexon
TCONS_00022347-exon-sc0000411-1575043694:76234..76695TCONS_00022347-exon-sc0000411-1575043694:76234..76695Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000411supercontigsc0000411:76234..76695 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.140228	0	0	0	1.32374	0.747169	0.180286	0.843906	0.236335	0	0.28414	0.0933912	0.186523	0.387411	0	0	0	0	0	0	0	0.396789	0	0	0.602227	1.07495	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022347 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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