TCONS_00022348 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022348
Unique NameTCONS_00022348
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length948

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022348 ID=TCONS_00022348|Name=TCONS_00022348|organism=Clytia hemisphaerica|type=transcript|length=948bp
tttcatttttcaaattattgtaAAGTTTATATTGCTCGTTTTGGACATAA
ATGTGCAATTTAAGCTCCttcattttctctttgaatGTGGACTGAACGGA
ATCAAAAGGCAAGGTCGCCTGAACTTTGGAAGCTTTGCCATTGACAGTCG
CCCATTGATGATACTTTAACTCGTCGTCATGATTCTCTGCATCTGTTCCA
CTTGAATCTCCAGAATTGGTGTCAGATTCGGAGGATTGTTGGACGTCTAT
AAAACAATCCTCAGCAGCTTCCCAGGTTTGGATTTCATACACTTCACATT
TTCGAGGTCACAAGAAAATTCTTTGACATTAGTCGGCAACCGTTTATCTA
TCTTTTTAAGATTTCGATTGATTGACATGACGAAAAGATGAACATTTTCG
CAGATCTCGCATGTGCAAGACTCATGAGGCGTGTCCCTTTGAAATTTGTA
CTCTTTGTGAACCTTAATAAAGTTATAGAGCATTCTGAAGGTTACAACTT
TGCTGTTGAACCTTGCAGGAAAAGACTCTTCAACAGTCTGCTGGACTTGA
CTGGAACCATTAACGATATCCAAAATTTCCCGAAGAGTCCATTGCAAATA
TCGTTTTTGCTTGTATTGTCTCTCGCCATTCACCTTACCGATATAGACAG
TGTCTTTGCGTCCTGGTGTCTGGCGAGATATATCAGGGCGGTCAAGGAAA
TCCTGAAGCCATTGCTCCTCTTCAGTTTCCAGCTCCTTTTTCGGACGGCC
TCTACTATCGTAGAACTTGATTCGGGGAAGGGATTTCGAAGCCAACATTT
TAACGATCTCAGTCCTCTTACCAGGAGGGCtttttggtagattttttccG
CTTTTCTCAAACTTCTACTTCTTGAAGCCGAATATCGGAATGCACCCGAA
CCAACGGTTTCTTGATCCGGCGTCGACGGCATGGCATTTTCGAAGGAt
Run BLAST on NCBI

protein sequence of TCONS_00022348-protein

>TCONS_00022348-protein ID=TCONS_00022348-protein|Name=TCONS_00022348-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
MLASKSLPRIKFYDSRGRPKKELETEEEQWLQDFLDRPDISRQTPGRKDT
VYIGKVNGERQYKQKRYLQWTLREILDIVNGSSQVQQTVEESFPARFNSK
VVTFRMLYNFIKVHKEYKFQRDTPHESCTCEICENVHLFVMSINRNLKKI
DKRLPTNVKEFSCDLENVKCMKSKPGKLLRIVL
Run BLAST on NCBI

transcript from alignment at sc0000411:77270..78217

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022348 ID=TCONS_00022348|Name=TCONS_00022348|organism=Clytia hemisphaerica|type=transcript|length=948bp|location=Sequence derived from alignment at sc0000411:77270..78217 (Clytia hemisphaerica)
aTCCTTCGAAAATGCCATGCCGTCGACGCCGGATCAAGAAACCGTTGGTT
CGGGTGCATTCCGATATTCGGCTTCAAGAAGTAGAAGTTTGAGAAAAGCg
gaaaaaatctaccaaaaaGCCCTCCTGGTAAGAGGACTGAGATCGTTAAA
ATGTTGGCTTCGAAATCCCTTCCCCGAATCAAGTTCTACGATAGTAGAGG
CCGTCCGAAAAAGGAGCTGGAAACTGAAGAGGAGCAATGGCTTCAGGATT
TCCTTGACCGCCCTGATATATCTCGCCAGACACCAGGACGCAAAGACACT
GTCTATATCGGTAAGGTGAATGGCGAGAGACAATACAAGCAAAAACGATA
TTTGCAATGGACTCTTCGGGAAATTTTGGATATCGTTAATGGTTCCAGTC
AAGTCCAGCAGACTGTTGAAGAGTCTTTTCCTGCAAGGTTCAACAGCAAA
GTTGTAACCTTCAGAATGCTCTATAACTTTATTAAGGTTCACAAAGAGTA
CAAATTTCAAAGGGACACGCCTCATGAGTCTTGCACATGCGAGATCTGCG
AAAATGTTCATCTTTTCGTCATGTCAATCAATCGAAATCTTAAAAAGATA
GATAAACGGTTGCCGACTAATGTCAAAGAATTTTCTTGTGACCTCGAAAA
TGTGAAGTGTATGAAATCCAAACCTGGGAAGCTGCTGAGGATTGTTTTAT
AGACGTCCAACAATCCTCCGAATCTGACACCAATTCTGGAGATTCAAGTG
GAACAGATGCAGAGAATCATGACGACGAGTTAAAGTATCATCAATGGGCG
ACTGTCAATGGCAAAGCTTCCAAAGTTCAGGCGACCTTGCCTTTTGATTC
CGTTCAGTCCACattcaaagagaaaatgaaGGAGCTTAAATTGCACATTT
ATGTCCAAAACGAGCAATATAAACTTtacaataatttgaaaaatgaaa

Coding sequence (CDS) from alignment at sc0000411:77270..78217

>TCONS_00022348 ID=TCONS_00022348|Name=TCONS_00022348|organism=Clytia hemisphaerica|type=CDS|length=552bp|location=Sequence derived from alignment at sc0000411:77270..78217 (Clytia hemisphaerica)
ATGTTGGCTTCGAAATCCCTTCCCCGAATCAAGTTCTACGATAGTAGAGG
CCGTCCGAAAAAGGAGCTGGAAACTGAAGAGGAGCAATGGCTTCAGGATT
TCCTTGACCGCCCTGATATATCTCGCCAGACACCAGGACGCAAAGACACT
GTCTATATCGGTAAGGTGAATGGCGAGAGACAATACAAGCAAAAACGATA
TTTGCAATGGACTCTTCGGGAAATTTTGGATATCGTTAATGGTTCCAGTC
AAGTCCAGCAGACTGTTGAAGAGTCTTTTCCTGCAAGGTTCAACAGCAAA
GTTGTAACCTTCAGAATGCTCTATAACTTTATTAAGGTTCACAAAGAGTA
CAAATTTCAAAGGGACACGCCTCATGAGTCTTGCACATGCGAGATCTGCG
AAAATGTTCATCTTTTCGTCATGTCAATCAATCGAAATCTTAAAAAGATA
GATAAACGGTTGCCGACTAATGTCAAAGAATTTTCTTGTGACCTCGAAAA
TGTGAAGTGTATGAAATCCAAACCTGGGAAGCTGCTGAGGATTGTTTTAT
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012533XLOC_012533Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022348-proteinTCONS_00022348-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022348-exon-sc0000411-1491911889:77270..78217TCONS_00022348-exon-sc0000411-1491911889:77270..78217Clytia hemisphaericaexon
TCONS_00022348-exon-sc0000411-1510915933:77270..78217TCONS_00022348-exon-sc0000411-1510915933:77270..78217Clytia hemisphaericaexon
TCONS_00022348-exon-sc0000411-1575043694:77270..78217TCONS_00022348-exon-sc0000411-1575043694:77270..78217Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000411supercontigsc0000411:77270..78217 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0480078	0.0936303	0.217427	0.0531797	0.58267	0.460434	0.370329	0.693396	0.242731	0.501103	0.145915	0.255783	0.191571	0.762634	0.0272604	0	0	0.110817	0.4593	0.267013	0.0464166	0.0679212	0	0.150131	0.927789	1.10404	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022348 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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