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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022349 ID=TCONS_00022349|Name=TCONS_00022349|organism=Clytia hemisphaerica|type=transcript|length=1077bp
TATTTCCTTTTTCCTCCTAGGAATCCTTCTTTACAAGTCAAAGTGGCTTC
AAATTTGGAACAGTGGAATAAAGTGGCGAGTGTGTACTTCGGAGATTCGT
GCAGGACTTCTGCCTTAAATGTTTGTACTCGTCGAGTCTCGTCGTCTGGC
GGAACTGTGCAATTCCGTATGTCCGGGAATCTGTAGATACCAGTGGGCTT
GACTCTTGTGCAGTCATAAATTGGTCCTAATTGCATTGCCTCGCTCTTTG
TGACCCAGTTGAGAAGCATCAGCCAAATGATTGCGGTACCTCTGACGTTT
TGCATATGTCTCCTAGGCGTGGTAAGGTTTATATTATTCACGGAATACCG
CGTTTTGTCAGTGTAGGGTTGTACAAAGCTGCTATCAAGTTTATTTTTAG
GAACCCATGTGTTTTGTGTCATAGGTTTATTACGCCATTTTACCAAGTAC
TCCATTTTGCCTTTTTTCTTGCGGTGGTTTATAATGACTTCTGGACCAGT
CATGTCCACGATATAGGTGTCGGCTCTTTATCTGATTTGCGGCTCTGGTA
CTTTGGGTGGTCGTGGTAGGTCGTCCATAGCGTCGTTATTATAGGAATCA
ACGCTTTCCTGTTGCTCAACGTATTTTTTCATTCTGTTAACATGAATCGG
CGATTTGACAGGTTTGCCATTGGTTTCTGTTAGTTTGAATAATACATCGG
ACAGTTTTTCCTTCAGAATGTAGGGACCAACGAATTTTGGTCCGAGTTTT
GGGCTTAGGCCAATAGTTTTGTTCAATTTTGAAATGAGGACCTTGTCATC
GACTTCAAATTTGGGTGGAGCAGTTTTTCTGTTATAGAACTGATCCATTT
TGGATGCTTGTTTTTCTGCATGAGCGGCGGCTAGTTCGTGGGCTACTTTG
AGCGTTTCGACCAACTCTTCTTTAGACTGTTCGAAGGTAACTGCACGTTT
CTTTTGAGGCAGCAGTGCGACGTCTCCCGGAAGCCTTANTTCTGTAAGAC
ATccaagttttctggcaaatcaAAGTGACCACAAGGTTCAACCCCATCCT
CACGTCTGTACCATTGATCGAAGTACG Run BLAST on NCBI protein sequence of TCONS_00022349-protein >TCONS_00022349-protein ID=TCONS_00022349-protein|Name=TCONS_00022349-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
MTGPEVIINHRKKKGKMEYLVKWRNKPMTQNTWVPKNKLDSSFVQPYTDK
TRYSVNNINLTTPRRHMQNVRGTAIIWLMLLNWVTKSEAMQLGPIYDCTR
VKPTGIYRFPDIRNCTVPPDDETRRVQTFKAEVLHESPKYTLATLFHCSK
FEATLTCKEGFLGGKRK Run BLAST on NCBI transcript from alignment at sc0000411:78926..80002 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022349 ID=TCONS_00022349|Name=TCONS_00022349|organism=Clytia hemisphaerica|type=transcript|length=1077bp|location=Sequence derived from alignment at sc0000411:78926..80002 (Clytia hemisphaerica)
CGTACTTCGATCAATGGTACAGACGTGAGGATGGGGTTGAACCTTGTGGT
CACTTtgatttgccagaaaacttggATGTCTTACAGAANTAAGGCTTCCG
GGAGACGTCGCACTGCTGCCTCAAAAGAAACGTGCAGTTACCTTCGAACA
GTCTAAAGAAGAGTTGGTCGAAACGCTCAAAGTAGCCCACGAACTAGCCG
CCGCTCATGCAGAAAAACAAGCATCCAAAATGGATCAGTTCTATAACAGA
AAAACTGCTCCACCCAAATTTGAAGTCGATGACAAGGTCCTCATTTCAAA
ATTGAACAAAACTATTGGCCTAAGCCCAAAACTCGGACCAAAATTCGTTG
GTCCCTACATTCTGAAGGAAAAACTGTCCGATGTATTATTCAAACTAACA
GAAACCAATGGCAAACCTGTCAAATCGCCGATTCATGTTAACAGAATGAA
AAAATACGTTGAGCAACAGGAAAGCGTTGATTCCTATAATAACGACGCTA
TGGACGACCTACCACGACCACCCAAAGTACCAGAGCCGCAAATCAGATAA
AGAGCCGACACCTATATCGTGGACATGACTGGTCCAGAAGTCATTATAAA
CCACCGCAAGAAAAAAGGCAAAATGGAGTACTTGGTAAAATGGCGTAATA
AACCTATGACACAAAACACATGGGTTCCTAAAAATAAACTTGATAGCAGC
TTTGTACAACCCTACACTGACAAAACGCGGTATTCCGTGAATAATATAAA
CCTTACCACGCCTAGGAGACATATGCAAAACGTCAGAGGTACCGCAATCA
TTTGGCTGATGCTTCTCAACTGGGTCACAAAGAGCGAGGCAATGCAATTA
GGACCAATTTATGACTGCACAAGAGTCAAGCCCACTGGTATCTACAGATT
CCCGGACATACGGAATTGCACAGTTCCGCCAGACGACGAGACTCGACGAG
TACAAACATTTAAGGCAGAAGTCCTGCACGAATCTCCGAAGTACACACTC
GCCACTTTATTCCACTGTTCCAAATTTGAAGCCACTTTGACTTGTAAAGA
AGGATTCCTAGGAGGAAAAAGGAAATA Coding sequence (CDS) from alignment at sc0000411:78926..80002 >TCONS_00022349 ID=TCONS_00022349|Name=TCONS_00022349|organism=Clytia hemisphaerica|type=CDS|length=501bp|location=Sequence derived from alignment at sc0000411:78926..80002 (Clytia hemisphaerica)
ATGACTGGTCCAGAAGTCATTATAAACCACCGCAAGAAAAAAGGCAAAAT
GGAGTACTTGGTAAAATGGCGTAATAAACCTATGACACAAAACACATGGG
TTCCTAAAAATAAACTTGATAGCAGCTTTGTACAACCCTACACTGACAAA
ACGCGGTATTCCGTGAATAATATAAACCTTACCACGCCTAGGAGACATAT
GCAAAACGTCAGAGGTACCGCAATCATTTGGCTGATGCTTCTCAACTGGG
TCACAAAGAGCGAGGCAATGCAATTAGGACCAATTTATGACTGCACAAGA
GTCAAGCCCACTGGTATCTACAGATTCCCGGACATACGGAATTGCACAGT
TCCGCCAGACGACGAGACTCGACGAGTACAAACATTTAAGGCAGAAGTCC
TGCACGAATCTCCGAAGTACACACTCGCCACTTTATTCCACTGTTCCAAA
TTTGAAGCCACTTTGACTTGTAAAGAAGGATTCCTAGGAGGAAAAAGGAA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022349-exon-sc0000411-1491911889:78926..80002 | TCONS_00022349-exon-sc0000411-1491911889:78926..80002 | Clytia hemisphaerica | exon |
| TCONS_00022349-exon-sc0000411-1510915933:78926..80002 | TCONS_00022349-exon-sc0000411-1510915933:78926..80002 | Clytia hemisphaerica | exon |
| TCONS_00022349-exon-sc0000411-1575043694:78926..80002 | TCONS_00022349-exon-sc0000411-1575043694:78926..80002 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000411 | supercontig | sc0000411:78926..80002 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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