|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022357 ID=TCONS_00022357|Name=TCONS_00022357|organism=Clytia hemisphaerica|type=transcript|length=877bp
TCTAGATAAAGTTTTGTTGAAAAGACAATTCGCTCGTCTTTTTAACTAAT
CTAGTACGTATTTTGAATATCAAAAGTATTGATATCGAGTTAAAAGTGAA
AATTGAACAAGGAAACAATGTGTAAACAAGAAGAaatgttttcttgtttt
gaaattgaggATTGTGTCCTCGTTTTTTGGAATCCTGGTCAAAGAATGAT
CAAGAATATTGAATTCAGTGAAGAAGAGAAATTTGTCTCGTTTCTGACAC
GAGATGTATTGAAGTTTATCGACCAACAAAATCAATCGAAAGAAAGTCAT
CAATTGAAGACAGAAGAATGTAAACCAAGCCAAGGAGAGAACTTCATGAC
TTGGTTGACTGATGATGTCTTTAAATTACTTGACCAAAAACGCAAACGCC
AAGTTTCAGGTGTGACGGTGACCCAAACTGCAACAAAATCAACACAGACT
GCACCTGTCAAGCCACCTCGTAATTTCCCAGCTCGCATCAAACAGCTGAA
CGACGAGATTACTTACAAAGACTGGAAAATTTCTGATATGCAATGGCAGC
TTGATGTGGAGAAAGTGAGATTGGGTAAAAAGTTGATCCACCAAGAGATG
TTGTTTTTGTTGGAGAAAAAACAGACGGAAGAAATGCTACGAACACGAAA
CGAAGAGATCTCAAAATTGAAAGAAGACCTGGAAGATGCCAACGAAGTTT
TGTACGAGAAAAACAAGTTGATTTTCGAACTAACAACCAAATCATCCAAA
AGCAAGATCAAGAAATCCTTCGTCGCTTTGCTTCAAGGCATTTCAACCCG
TCGTTTTAGATCTGCCGTCACCGGATTTTTCTCACATCGTCATTTCCGAC
TTCGCCGGCAATAAACATCATGccaac Run BLAST on NCBI protein sequence of TCONS_00022357-protein >TCONS_00022357-protein ID=TCONS_00022357-protein|Name=TCONS_00022357-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
MCKQEEMFSCFEIEDCVLVFWNPGQRMIKNIEFSEEEKFVSFLTRDVLKF
IDQQNQSKESHQLKTEECKPSQGENFMTWLTDDVFKLLDQKRKRQVSGVT
VTQTATKSTQTAPVKPPRNFPARIKQLNDEITYKDWKISDMQWQLDVEKV
RLGKKLIHQEMLFLLEKKQTEEMLRTRNEEISKLKEDLEDANEVLYEKNK
LIFELTTKSSKSKIKKSFVALLQGISTRRFRSAVTGFFSHRHFRLRRQ Run BLAST on NCBI transcript from alignment at sc0000411:200768..201644 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022357 ID=TCONS_00022357|Name=TCONS_00022357|organism=Clytia hemisphaerica|type=transcript|length=877bp|location=Sequence derived from alignment at sc0000411:200768..201644 (Clytia hemisphaerica)
gttggCATGATGTTTATTGCCGGCGAAGTCGGAAATGACGATGTGAGAAA
AATCCGGTGACGGCAGATCTAAAACGACGGGTTGAAATGCCTTGAAGCAA
AGCGACGAAGGATTTCTTGATCTTGCTTTTGGATGATTTGGTTGTTAGTT
CGAAAATCAACTTGTTTTTCTCGTACAAAACTTCGTTGGCATCTTCCAGG
TCTTCTTTCAATTTTGAGATCTCTTCGTTTCGTGTTCGTAGCATTTCTTC
CGTCTGTTTTTTCTCCAACAAAAACAACATCTCTTGGTGGATCAACTTTT
TACCCAATCTCACTTTCTCCACATCAAGCTGCCATTGCATATCAGAAATT
TTCCAGTCTTTGTAAGTAATCTCGTCGTTCAGCTGTTTGATGCGAGCTGG
GAAATTACGAGGTGGCTTGACAGGTGCAGTCTGTGTTGATTTTGTTGCAG
TTTGGGTCACCGTCACACCTGAAACTTGGCGTTTGCGTTTTTGGTCAAGT
AATTTAAAGACATCATCAGTCAACCAAGTCATGAAGTTCTCTCCTTGGCT
TGGTTTACATTCTTCTGTCTTCAATTGATGACTTTCTTTCGATTGATTTT
GTTGGTCGATAAACTTCAATACATCTCGTGTCAGAAACGAGACAAATTTC
TCTTCTTCACTGAATTCAATATTCTTGATCATTCTTTGACCAGGATTCCA
AAAAACGAGGACACAATcctcaatttcaaaacaagaaaacattTCTTCTT
GTTTACACATTGTTTCCTTGTTCAATTTTCACTTTTAACTCGATATCAAT
ACTTTTGATATTCAAAATACGTACTAGATTAGTTAAAAAGACGAGCGAAT
TGTCTTTTCAACAAAACTTTATCTAGA Coding sequence (CDS) from alignment at sc0000411:200768..201644 >TCONS_00022357 ID=TCONS_00022357|Name=TCONS_00022357|organism=Clytia hemisphaerica|type=CDS|length=747bp|location=Sequence derived from alignment at sc0000411:200768..201644 (Clytia hemisphaerica)
TTATTGCCGGCGAAGTCGGAAATGACGATGTGAGAAAAATCCGGTGACGG
CAGATCTAAAACGACGGGTTGAAATGCCTTGAAGCAAAGCGACGAAGGAT
TTCTTGATCTTGCTTTTGGATGATTTGGTTGTTAGTTCGAAAATCAACTT
GTTTTTCTCGTACAAAACTTCGTTGGCATCTTCCAGGTCTTCTTTCAATT
TTGAGATCTCTTCGTTTCGTGTTCGTAGCATTTCTTCCGTCTGTTTTTTC
TCCAACAAAAACAACATCTCTTGGTGGATCAACTTTTTACCCAATCTCAC
TTTCTCCACATCAAGCTGCCATTGCATATCAGAAATTTTCCAGTCTTTGT
AAGTAATCTCGTCGTTCAGCTGTTTGATGCGAGCTGGGAAATTACGAGGT
GGCTTGACAGGTGCAGTCTGTGTTGATTTTGTTGCAGTTTGGGTCACCGT
CACACCTGAAACTTGGCGTTTGCGTTTTTGGTCAAGTAATTTAAAGACAT
CATCAGTCAACCAAGTCATGAAGTTCTCTCCTTGGCTTGGTTTACATTCT
TCTGTCTTCAATTGATGACTTTCTTTCGATTGATTTTGTTGGTCGATAAA
CTTCAATACATCTCGTGTCAGAAACGAGACAAATTTCTCTTCTTCACTGA
ATTCAATATTCTTGATCATTCTTTGACCAGGATTCCAAAAAACGAGGACA
CAATcctcaatttcaaaacaagaaaacattTCTTCTTGTTTACACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022357-exon-sc0000411-1491911889:200768..201644 | TCONS_00022357-exon-sc0000411-1491911889:200768..201644 | Clytia hemisphaerica | exon |
| TCONS_00022357-exon-sc0000411-1510915933:200768..201644 | TCONS_00022357-exon-sc0000411-1510915933:200768..201644 | Clytia hemisphaerica | exon |
| TCONS_00022357-exon-sc0000411-1575043694:200768..201644 | TCONS_00022357-exon-sc0000411-1575043694:200768..201644 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000411 | supercontig | sc0000411:200768..201644 . |
Blast
The following BLAST results are available for this feature:
|
