TCONS_00022368 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022368
Unique NameTCONS_00022368
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length431

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022368 ID=TCONS_00022368|Name=TCONS_00022368|organism=Clytia hemisphaerica|type=transcript|length=431bp
ataaattttacaaatacTAAAAATAATAACTTAAAAGGTGCATAAAAGGC
GCATAAAGGGTATGTGAACATCCAAATTGACCGTTAATTGACtgcttttt
tctgaaaaaaagtttcaaaaaaacaacatgCAATCAAACAAATCtacaaa
aacttaaaatcagTGCAGAGTGCAATATGGTCAGAGGGATGATCTAGGGA
TGGGTATCGTGTTTTTGGTACAAAAAAGCTACCCCATGATGCACCGCTGT
TTCTTTACGCACCATAAAATCACCGACATATCCAACACTGGATAATTTGT
TTTCCATTAGTGTAAAATGATCTACTTCTTGTAAACAAATCACATCCGGG
TCATACAGCTCTATGTATCGTAAAATGAGATTCAAGCGATAAATCCAATC
CAAGCAATGTGGTGGAACAACGCAAAAATTC
Run BLAST on NCBI

transcript from alignment at sc0000414:58721..59629+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022368 ID=TCONS_00022368|Name=TCONS_00022368|organism=Clytia hemisphaerica|type=transcript|length=909bp|location=Sequence derived from alignment at sc0000414:58721..59629+ (Clytia hemisphaerica)
ataaattttacaaatacTAAAAATAATAACTTAAAAGGTGCATAAAAGGC
GCATAAAGGGTATGTGAACATCCAAATTGACCGTTAATTGACtgcttttt
tctgaaaaaaagtttcaaaaaaacaacatgCAATCAAACAAATCtacaaa
aacttaaaatcagTGCAGAGTGCAATATGGTCAGAGGGATGATCTAGGGA
TGGGTATCGTGTTTTTGGTACGTCAGTCTCCTCCATTGGTAAAAGAATAT
CTGAGACATTCAACTTTTCTTTTGTATACCAAATATAGTCAATTGTGTGT
TTCTCTTCATAAGTGGGTCTTATCTTCCACGTGGTAAACTCTGGTTCACT
ACCAAGAACTTCTTCATAGCTACTTTTGAATCCAATTGAAGAATCAGTGA
TTTCTTTATGAAACATCTCAGTCGTTTCTCCATTGAAATCGCCAGCCCAA
ACCATTGGTGTATCattatattttaataaaacCTTCTCATATATTTTAAG
CGCACTCTTTGTTTGAGCCCATCTTCTTTCATGGAACGGTCGTTTAGCTT
TTTGATGAACATTACCCACAATGACTTGCTTTCCCGACGTTTTCTCTTTC
AAGAGTTTCACAAGAAGGCCTTGGTTCCCAACTTTCCCATCCTCTTCATG
CAGATAATCATTGAATGTCTCcaacaaatcaaattttgatGTCTTGTAGA
AAAAAGCTACCCCATGATGCACCGCTGTTTCTTTACGCACCATAAAATCA
CCGACATATCCAACACTGGATAATTTGTTTTCCATTAGTGTAAAATGATC
TACTTCTTGTAAACAAATCACATCCGGGTCATACAGCTCTATGTATCGTA
AAATGAGATTCAAGCGATAAATCCAATCCAAGCAATGTGGTGGAACAACG
CAAAAATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012549XLOC_012549Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022368-exon-sc0000414-1491911889:58721..58941TCONS_00022368-exon-sc0000414-1491911889:58721..58941Clytia hemisphaericaexon
TCONS_00022368-exon-sc0000414-1510915933:58721..58941TCONS_00022368-exon-sc0000414-1510915933:58721..58941Clytia hemisphaericaexon
TCONS_00022368-exon-sc0000414-1575043694:58721..58941TCONS_00022368-exon-sc0000414-1575043694:58721..58941Clytia hemisphaericaexon
TCONS_00022368-exon-sc0000414-1491911889:59420..59629TCONS_00022368-exon-sc0000414-1491911889:59420..59629Clytia hemisphaericaexon
TCONS_00022368-exon-sc0000414-1510915933:59420..59629TCONS_00022368-exon-sc0000414-1510915933:59420..59629Clytia hemisphaericaexon
TCONS_00022368-exon-sc0000414-1575043694:59420..59629TCONS_00022368-exon-sc0000414-1575043694:59420..59629Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000414supercontigsc0000414:58721..59629 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.916	24.2514	1.18574	0.870465	0	0	0	0	1.72493	0	0	1.07605	0	0	0	0	0	0	0	0	0	0	6.67584	1.09672	0	0	1.58084	0.318826	2.98114	2.2108
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022368 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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