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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022373 ID=TCONS_00022373|Name=TCONS_00022373|organism=Clytia hemisphaerica|type=transcript|length=5763bpRun BLAST on NCBI protein sequence of TCONS_00022373-protein >TCONS_00022373-protein ID=TCONS_00022373-protein|Name=TCONS_00022373-protein|organism=Clytia hemisphaerica|type=polypeptide|length=967bp MASSWKHRKPPDDRIASQLMLCIMPQPCVFKESCPNAHSQDELNEWKRRLRun BLAST on NCBI transcript from alignment at sc0000414:124131..154953+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022373 ID=TCONS_00022373|Name=TCONS_00022373|organism=Clytia hemisphaerica|type=transcript|length=30823bp|location=Sequence derived from alignment at sc0000414:124131..154953+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000414:124131..154953+ >TCONS_00022373 ID=TCONS_00022373|Name=TCONS_00022373|organism=Clytia hemisphaerica|type=CDS|length=31944bp|location=Sequence derived from alignment at sc0000414:124131..154953+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00022373 vs. Swiss-Prot (Human)
Match: HELZ (Probable helicase with zinc finger domain OS=Homo sapiens GN=HELZ PE=1 SV=2) HSP 1 Score: 335.109 bits (858), Expect = 1.508e-92 Identity = 240/738 (32.52%), Postives = 382/738 (51.76%), Query Frame = 1
Query: 856 KVLVQFKAEKVGNYGQELIFDFGGYPKVVKRIGVQVENEESLTQFMKFDPKKEENNELGWRKNYK----IKPFNS--LQKDCDQGEIKYPLPTNIENLVLYDAFKHLDIRLTKSNYRQRLHTLLHIEEYQRRADLQCMTFHVEDFVVC---LSEVKSRRMDCKTAAIELNDVVLELLTKLVGKSGKALLRING-YATPV-------RVFSEPIVYEVIVQNIVNGKLILEMNDQCFSIVKKSP-IPVDIDVCFCLIDV-FQSMHSAVENV-NLDLLFPNMTLSKSLPES--RKSLNMKDEELSVDQKHAIDVIMRPVV--RAPVILLGPFGAGKTMTIACCIDRILSQADTRNKILLCTHSNSAADHYIEEYFHPKHQTSKSPYANQRNVPLRINWEHRYTSSVSDKVLTYCLQDLNTGLFASPKKEDLDKANIVICTLVTSESMYKLNLPKNYFTHIFIDEAAQAMEVEALVPLLMASPHTKIVLAGDHLQMGESLSSLTAKNLGLEKSLLERLFEYYPFDLEYKLKLLENFRSYKEIVDLSSHLFYEDSLICN-KQRSDDVPFPVEFHGTEGEE-NLSNETPSYENMDEAFKILELIQQISTEENKDYKVELSSICVVAFYPAQVRRIRKVLRKNQLYPVRVESVNNIQGLEFDILLISTVRTYCNSTFNDESLSK------------DMGFFTNPKLLNTAITRARYRVFFVGDARALCTIGECKPCWKFIMRYC 2955
KV + F E G + Q ++FDFG P +++R+ + + E L +++ ++ W + K +P + L+K I+Y +P + + L LD LTKSNY+ RLH LL+IEE + ++ V+ ++ L+ V + + + E L++ + ++N Y PV ++ VYE ++ + L ++ +C + P +++ F L + MH A++ + + +LFP+++++ ++P S R+ D L+ QK A+ I P+ PV+++GP+G GKT T+A + IL Q +TR IL+CTHSNSAAD YI++Y HP + N + PLR+ + +R+ +V V YCL F P+KED+ K +V+ TL TS+ + +L+L +FTHI +DEAAQAME E ++PL +A+ +T+IVLAGDH+Q+ + S A+ L SLL+RL+E+YP + ++ L EN+RS++ I++ +S LFYE L+ + KQ + +P+ F GE+ N T Y N + + + + K++ SI VV Y QV RIR LRK +L V VE V N+QG +F +L +STVRT + K D GF +N KLLNTAITRA+ V VGD ALC+IG C+ W+ + C
Sbjct: 348 KVGIAFNTEIFGTFRQTIVFDFGLEPVLMQRVMIDAASTEDL-EYLMHAKQQLVTTAKRWDSSSKTIIDFEPNETTDLEKSL---LIRYQIPLSADQLFTQSV---LDKSLTKSNYQSRLHDLLYIEEIAQYKEISKFNLKVQLQILASFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNAVYLLPVPKQKLVQTQGTKEKVYEATIEEKTKEYIFLRLSRECCEELNLRPDCDTQVELQFQLNRLPLCEMHYALDRIKDNGVLFPDISMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITTPLAIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQETR--ILICTHSNSAADLYIKDYLHPYVEA-----GNPQARPLRVYFRNRWVKTVHPVVHQYCLISSAHSTFQMPQKEDILKHRVVVVTLNTSQYLCQLDLEPGFFTHILLDEAAQAMECETIMPLALATQNTRIVLAGDHMQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDFYPLTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALC 1071 HSP 2 Score: 90.1225 bits (222), Expect = 1.004e-17 Identity = 52/118 (44.07%), Postives = 65/118 (55.08%), Query Frame = 2
Query: 3173 TFFFHQVRRIRKVLRKNQLYPVRVESVNNIQGLEFDILLISTVRTY--CN----------STFNDESLSKDMGFFTNPKLLNTAITRARYRVFFVGDARALCTIGECKPCWKFIMRYC 3490
T + QV RIR LRK +L V VE V N+QG +F +L +STVRT C D + D GF +N KLLNTAITRA+ V VGD ALC+IG C+ W+ + C
Sbjct: 954 TPYADQVFRIRAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALC 1071 The following BLAST results are available for this feature:
BLAST of TCONS_00022373 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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