TCONS_00022427 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022427
Unique NameTCONS_00022427
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2427

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022427 ID=TCONS_00022427|Name=TCONS_00022427|organism=Clytia hemisphaerica|type=transcript|length=2427bp
ATTGAGATTTATAATACGAATTTTACTTTTGATGTTTTGGACTATAATat
aattaaaattaataaaatttaaaatatacaTGGAGCTTTAATGCATTGAC
GCAGTATTTACGAATAAAATTAAAGTATTCTACGATGCCATACACatgtt
gcaaaattatatcaatgcagtccaaacatgtgattactcggaaaagttca
cgtgattttattcccatgttacttgctttacaatttacagctgataactt
tattagtgtcaatcaattcgaaccaatcagaagtaaatgtcatgtaacaa
gcacataaaaatttcgagtaaaagcgtgatttgtcttcagactttaattt
gcAACATGTGTATTGATAACGAGAGTAGCAcgacaggaaaaaaataatct
aaagTCTTCCTTAACCAATCTTCTGATATTATAAAGAAGAAGTCAAGCTA
ATTACCAATGAGATATTGGGCTGGCTAGAGTTTGTGAGAACGTTTGTACA
CGCCTGTTTGGTTTGAAGGTTTGATAAACTATTACGCAATTCGATCTTTG
ACTGGCTAGAATTAGCATATAGATAGAATTTAAATCATACTAGATGTTTT
TTTCAGGAAACcttatcaaaaaaattgttataatatTATAATATTGGGAT
AAATTTACTAAAAATGTGTCATATTTTTCTATGTAAGATAAAAATGTTCa
catttttctaattcattTCTTCAAAGTATAGCAAAGTCAATTCATATTTT
TGCAGCGTTATAAATATCGCTTTAAATCCCCATATTCAAGTTTTTTCTGT
CTAAGTATAAGATGCTCAATTGCACATCTACAAGGGACTGTCCAACATAA
CTTTGGTTTAGCTCAATAGTTAACAGTTaatactttaatttttaaacacc
attTTATTCTCCGCTATTGAAAATAAGGGATCGAGTTGAACTCTTCATTG
TCTGTAGCCCTCTTCTGGTCTTGGAAGAAGGGGATGGTAACCGTCTCCCT
CTTGGAGGCATCTGATGATTCCTGGAGGTTAGCATCCATGAAGTAGGTAG
CATCATCATCATTAAGGGTGCTCTGGAAGAATGGGATATCTTTTTTGCTC
GAAAAGTAGGGAATAGAGGCTGATGTGGATCTCTTGCTTGCAAAATATGG
GATATTTTCTTCCGATGTAGATTTTTTCTTTGCGAAATATGGAATCGAAT
TCTTTTTGGAGAAATAGGGAATTTCTGACTTTTTGTTCGCAAAATACGGG
ATACTGTCCTTTTTATTTGCAAAGTAAGGGATAGAATCTTCTTTAGTTGC
TCGTCTTGCCAAATGGAATGGGAGCTCCTTCCTACTGTAGTATGGGATGG
TAGCACTGCGTTGAAAGTAAGGTATGGTCTCCCGCTTATGGTAGAATGGG
ATGGTGTCTCGTTTGGCGTAATACGGGATGGACCGGCGTTGGAAATACGG
GATAGCTGCATTTCTTACGTAATATGGGATATCACGTTTGCTGAAATACG
GAATGTCCTTTTTGGAAGCAAAATATGGAATTTTATCACGTCTTGAAGCA
AAATATGGAATTTCTTCGatacttctttgaaaatatgggatagtgttttt
cttggaaaaatacGGCATCGCTGCGCTGCGTTGGAAGTAAGGAATGGTGC
TCTTCTTGGAAAAATATGGAATGCTTCTTCGTTTATGAAAGAAAGGGATA
TCAGCAGCCTCACGACTATGGAAATATGGAACATCGGATTTCTTGTGGAG
TAACGGCATGGATTTTTTTGAGGAGAAAAATGGGATCCTGGAAGATACTT
CTTTGCGTGCTTCCTTGATCAGGGCGGTTGCCAGACGTCGTTTAGCTTCA
TCTAGGGTGATGCCTGCTCCTTCCGCACTATTGCTAGAAGCCTTCTCATC
TTTTGCAGCAGCAGCCTCCTTTTTGGTAGCTTCCacttcgattgattttt
tttctttgctgcCTTCGGCGTCAACTGACTTCTTTTCTTTTGCTAGAGtg
atcaaacttttcaaacttcTCTTGATCTCACTTTCAATGTCCTTTTTGTT
CAACTCTTCCAGAGCTTTTGCATCACTTGTGGTATCGACTGAATATACAA
CGCATGCGCATATCaccaataaaaataacaatttgaCTGTGATAAGCGAT
ACCATAATGCTCTAATACGATGCCTTTCAAGNTTAACTGTGATAAACGAT
ACCATAATGCTCTACGCACGACGATGCTACCAAACCACAAGAAAAGTTTT
AAACCCAATGTCTATCGAAGTCTTTTTTTCCACGTCGGGCCCAATTTACA
GTTTTGGTCCCAGAGCTTTTACTTCAGAACGCGACTTGACCAAATTAATT
TTGGCTCAAGATTAATTACTTTTATCCCCTTCAAATGCTCTTTTTATTga
acttcaaagaaaaaaatgattcttCAG
Run BLAST on NCBI

transcript from alignment at sc0000417:88265..91195-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022427 ID=TCONS_00022427|Name=TCONS_00022427|organism=Clytia hemisphaerica|type=transcript|length=2931bp|location=Sequence derived from alignment at sc0000417:88265..91195- (Clytia hemisphaerica)
ATTGAGATTTATAATACGAATTTTACTTTTGATGTTTTGGACTATAATAT
AATTAAAATTAATAAAATTTAAAATATACATGGAGCTTTAATGCATTGAC
GCAGTATTTACGAATAAAATTAAAGTATTCTACGATGCCATACACATGTT
GCAAAATTATATCAATGCAGTCCAAACATGTGATTACTCGGAAAAGTTCA
CGTGATTTTATTCCCATGTTACTTGCTTTACAATTTACAGCTGATAACTT
TATTAGTGTCAATCAATTCGAACCAATCAGAAGTAAATGTCATGTAACAA
GCACATAAAAATTTCGAGTAAAAGCGTGATTTGTCTTCAGACTTTAATTT
GCAACATGTGTATTGATAACGAGAGTAGCACGACAGGAAAAAAATAATCT
AAAGTCTTCCTTAACCAATCTTCTGATATTATAAAGAAGAAGTCAAGCTA
ATTACCAATGAGATATTGGGCTGGCTAGAGTTTGTGAGAACGTTTGTACA
CGCCTGTTTGGTTTGAAGGTTTGATAAACTATTACGCAATTCGATCTTTG
ACTGGCTAGAATTAGCATATAGATAGAATTTAAATCATACTAGATGTTTT
TTTCAGGAAACCTTATCAAAAAAATTGTTATAATATTATAATATTGGGAT
AAATTTACTAAAAATGTGTCATATTTTTCTATGTAAGATAAAAATGTTCA
CATTTTTCTAATTCATTTCTTCAAAGTATAGCAAAGTCAATTCATATTTT
TGCAGCGTTATAAATATCGCTTTAAATCCCCATATTCAAGTTTTTTCTGT
CTAAGTATAAGATGCTCAATTGCACATCTACAAGGGACTGTCCAACATAA
CTTTGGTTTAGCTCAATAGTTAACAGTTAATACTTTAATTTTTAAACACC
ATTTTATTCTCCGCTATTGAAAATAAGGGATCGAGTTGAACTCTTCATTG
TCTGTAGCCCTCTTCTGGTCTTGGAAGAAGGGGATGGTAACCGTCTCCCT
CTTGGAGGCATCTGATGATTCCTGGAGGTTAGCATCCATGAAGTAGGTAG
CATCATCATCATTAAGGGTGCTCTGGAAGAATGGGATATCTTTTTTGCTC
GAAAAGTAGGGAATAGAGGCTGATGTGGATCTCTTGCTTGCAAAATATGG
GATATTTTCTTCCGATGTAGATTTTTTCTTTGCGAAATATGGTATCTCCT
CTGCGCTTTTCTTGCTTGCAAAATAAGGAATCGAATCCTTTTTGTTAGCA
AAATATGGAATCAGATTCTTTTTGGAGAAATAGGGAATTTCCTCTGATGC
CGTTCTTTTGCTGGCGAAGTAAGGAATTGCAGCATCCCTCCGATTTGCAA
AGTAAGGTATGCTGTCTTTTTTATTTGCAAAGTACGGAATCTCGGCTGAT
CTTCGGTTGGCGAAGTATGGAATTTCGGCGGATTTTTTACTCGCGAAATA
TGGAATTTCAGCGACATTTTTCTTGCTAGCAAAGTAGGGAATAGCGTTTT
TTTTGTTTGCAAAATAAGGAATCGCAGCAGATTTCTTGTTGGCAAAGTAC
GGTATTTCTTCGTCGCTGGCGGATTTTTTATTTGCGAAAAACGGTATCTC
CTCTGCGCTTTTCTTGCTTGTAAAATAAGGGATGGAATCTTTTTTGGAGA
AGTAGGGAATTTCCTCTGATGTCGTTCTTTTGCTGGCGAAGTAAGGAATC
GAATTCTTTTTGGAGAAATAGGGAATTTCTGACTTTTTGTTCGCAAAATA
CGGGATACTGTCCTTTTTATTTGCAAAGTAAGGGATAGAATCTTCTTTAG
TTGCTCGTCTTGCCAAATGGAATGGGAGCTCCTTCCTACTGTAGTATGGG
ATGGTAGCACTGCGTTGAAAGTAAGGTATGGTCTCCCGCTTATGGTAGAA
TGGGATGGTGTCTCGTTTGGCGTAATACGGGATGGACCGGCGTTGGAAAT
ACGGGATAGCTGCATTTCTTACGTAATATGGGATATCACGTTTGCTGAAA
TACGGAATGTCCTTTTTGGAAGCAAAATATGGAATTTTATCACGTCTTGA
AGCAAAATATGGAATTTCTTCGATACTTCTTTGAAAATATGGGATAGTGT
TTTTCTTGGAAAAATACGGCATCGCTGCGCTGCGTTGGAAGTAAGGAATG
GTGCTCTTCTTGGAAAAATATGGAATGCTTCTTCGTTTATGAAAGAAAGG
GATATCAGCAGCCTCACGACTATGGAAATATGGAACATCGGATTTCTTGT
GGAGTAACGGCATGGATTTTTTTGAGGAGAAAAATGGGATCCTGGAAGAT
ACTTCTTTGCGTGCTTCCTTGATCAGGGCGGTTGCCAGACGTCGTTTAGC
TTCATCTAGGGTGATGCCTGCTCCTTCCGCACTATTGCTAGAAGCCTTCT
CATCTTTTGCAGCAGCAGCCTCCTTTTTGGTAGCTTCCACTTCGATTGAT
TTTTTTTCTTTGCTGCCTTCGGCGTCAACTGACTTCTTTTCTTTTGCTAG
AGTGATCAAACTTTTCAAACTTCTCTTGATCTCACTTTCAATGTCCTTTT
TGTTCAACTCTTCCAGAGCTTTTGCATCACTTGTGGTATCGACTGAATAT
ACAACGCATGCGCATATCACCAATAAAAATAACAATTTGACTGTGATAAG
CGATACCATAATGCTCTAATACGATGCCTTTCAAGNTTAACTGTGATAAA
CGATACCATAATGCTCTACGCACGACGATGCTACCAAACCACAAGAAAAG
TTTTAAACCCAATGTCTATCGAAGTCTTTTTTTCCACGTCGGGCCCAATT
TACAGTTTTGGTCCCAGAGCTTTTACTTCAGAACGCGACTTGACCAAATT
AATTTTGGCTCAAGATTAATTACTTTTATCCCCTTCAAATGCTCTTTTTA
TTGAACTTCAAAGAAAAAAATGATTCTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012580XLOC_012580Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022427-exon-sc0000417-1575043694:90005..91195TCONS_00022427-exon-sc0000417-1575043694:90005..91195Clytia hemisphaericaexon
TCONS_00022427-exon-sc0000417-1575043694:88265..89500TCONS_00022427-exon-sc0000417-1575043694:88265..89500Clytia hemisphaericaexon
TCONS_00022427-exon-sc0000417-1510915933:90005..91195TCONS_00022427-exon-sc0000417-1510915933:90005..91195Clytia hemisphaericaexon
TCONS_00022427-exon-sc0000417-1510915933:88265..89500TCONS_00022427-exon-sc0000417-1510915933:88265..89500Clytia hemisphaericaexon
TCONS_00022427-exon-sc0000417-1491911889:90005..91195TCONS_00022427-exon-sc0000417-1491911889:90005..91195Clytia hemisphaericaexon
TCONS_00022427-exon-sc0000417-1491911889:88265..89500TCONS_00022427-exon-sc0000417-1491911889:88265..89500Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000417supercontigsc0000417:88265..91195 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0352957	0.0501839	0.11583	0.123196	0.157297	0	6.83045	6.25584	11.0039	15.2743	7.34959	11.6482	1.33658	1.05324	0.0567787	0	0.395696	0.379036	3.79862	4.0175	2.51952	1.98465	1.66236	1.82001	3.53678	2.28699	0	0.0739051	0.303063	0.210163
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022427 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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