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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022461 ID=TCONS_00022461|Name=TCONS_00022461|organism=Clytia hemisphaerica|type=transcript|length=1888bp
acaagaaGATGGGGTACCacgaaaaagttttatttttgggCTTCATATAC
CAAATAATAATTTGTGTTGAATGTAGAATTCAATCTTTTGGCACATACAA
ACACTATGAAATGGGCTTTGCTAACGTTGAGCTTTTCGAGCATTCTAAAC
TGGAAATTCAGCCATTTTTTGTAACAGAAGTTGAAAGTGCTATGGAATGT
GCTGATGAATGTTTGATGGCTGATCCAAAGATAAATATGTGTCAAGGCTT
CAATTTGTACACACGTGACCACCAAGCGACCAATAAGAGTAGTTGTGAAT
TATTGGCGAGACATCGATTTACATTACCGAGTACTTTGTTTGTCAGAAAA
GCTGATTGGATGCATTATCAACCCGTGACTGTATGTGCAAATCCAGCACC
GTGTGTGATCCAATTTAAAGAAAACGTGAGGTGTGTACCGAGAGTGGAAA
GTGATTCGGTAGATTGTATCTGTCAACCATATTGGAGAGGAGACCACTGc
aacgaagaagaaaaagAAGCTAAACATTACACTATCCAAAGTGGTGATGT
GGAACTTGGTAGAAACGTTATTCGTCCACAAGANAggatcaatttttttg
ttctgTAGAAGCTAAACATTACACTATCCAAAGTGGTGATGTGGAACTTG
GTAGAAACGTTATTCGTCCACAAGAATACATCTCCATCTCAATGTGGGTG
AAACTGGCGCAAGTTCAAACACCGAACATCGTATTGATAGACATCAAAGC
TGCCAATTGGAGATTCATTGCCGAATGTATGGAAGATTCTTATGGAGGAC
aacaaatcatttttcaattaaCGAATCTTGACAGTGACCAGATACACGAT
caaacttatgttGCAGGAGGTTTGAAGGAGAGTGAATGGTCGTTGTTGGC
TTGTTCCCTTGATTTCCGTCTTGATAGAGGGAACGTGACATGTTTCTTTA
ACCAAGATGTATTATACCACTCAACCTTCCACGCCAATCAAACCTTCGCT
GATCTTTACNGTATTATACCACTCAACCTTCCACGCCAATCAAACCTTCG
CTGATCTTTACCTCAATGTTAACACAGTACCAATGACCACAAGCGTTCCA
GATTCATCTTTAAAAATTCATATGAAGAATATCTGGTGGTGGCCCAAAAC
ATTTTTCATCCCAGAAGAAATCCCTTCAATGTTTTCTCAAACTTGGTTCC
CAAAAGGACGAGCTTATTACCACGTAGGAAATAGTATTCCAAGTGTATCG
GGAGATATCAAACATTAGTGACGAGTTGACTAAATAATCTAAATGTAATT
AAATCTCTCCCCCAAAGCCGAATGGGAGTTAAATAACCGCAGCGGCGAAG
CAAAATTACATATGGAAAAAGATCCATACCAGACGTCAGTCAATAATTGT
TGGCTAACCCAAAGGCGGATCGTAATTGCAGACGGCGGAAATGAATCATA
ACaaactcaagaaaatgttttgtcTCTTTagatataaaaacaaacttcga
AGAGGCAAAAAAAAAaacaaagacaattttAATAACTTGATACCTTATGC
AACATTgaattgagaaaatgttttAGTTATGGCTTAGAATCTAAAACTTA
TTTGAAGGCTTCCATaagtttcattaaaaaatacCATGTACGTTTAGTAT
TTGGtatttaaatttaaaacttttttaaaattttacgatttttcaatttt
tttacaagcTATAGGAACACGCATCACTGTGACAATTATCAGAAAGATAA
AGCAAtgtaaatagttttttttatcgTCAACTCTTTCAGTTCCGTACCAA
TCTTCGAAATGTACGATAGAGCGGTGGAAGTTTCAAATTCCCGccacatt
ttcaggatttttctcctttttctctCAGGCACACcggc Run BLAST on NCBI transcript from alignment at sc0000421:52779..59061- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022461 ID=TCONS_00022461|Name=TCONS_00022461|organism=Clytia hemisphaerica|type=transcript|length=6283bp|location=Sequence derived from alignment at sc0000421:52779..59061- (Clytia hemisphaerica)
ACAAGAAGATGGGGTACCACGAAAAAGTTTTATTTTTGGGCTTCATATAC
CAAATAATAATTTGTGTTGAATGTAGAATTCAATCTTTTGGCACATACAA
ACACTATGAAATGGGCTTTGCTAACGTTGAGCTTTTCGAGCATTCTAAAC
TGGAAATTCAGCCATTTTTTGTAACAGAAGTTGAAAGTGCTATGGAATGT
GCTGATGAATGTTTGATGGCTGATCCAAAGATAAATATGTGTCAAGGCTT
CAATTTGTACACACGTGACCACCAAGCGACCAATAAGAGTAGTTGTGAAT
TATTGGCGAGACATCGATTTACATTACCGAGTACTTTGTTTGTCAGAAAA
GCTGATTGGATGCATTATCAACCCGTGGTATGCTTTTCTTTTCTCTTGTT
TTTTCTTTTCTTTTCTTTTCCTTTCTTTTTATTTCTAGTACTCACACANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTACCAAAAA
TCAAAAGATTCCTATGATTCAATCCTGAGAAAAGTTGGTAACAGACGAAC
GAACGAACGAACGAACGAACGAACGGACGAACGAACGAACGAACGAACGA
ACACAGGTTAATTTATAGGACCTCCACCCTACCGGCTGAGCCGAGTCCAA
TATCTTTTCTCGTAGCCCAATATTTTTCATATTGGATGAGACTGCGTCCA
ATNTGCATTTAACACATATATAATTGATATCTACGTGAGCGTGACCATTA
AACAATCATTCAGAACACAAATAGTGACGATCTATTAAAATTAGTTGTTT
GTTTCTTAATAAAAAAACGTTTTATAGAAACCAAAATTTCATGCTCTTGA
ATTAAAAAAGTTAATGATACAATTTTTTCAAGTCCAAAAAACCCGANGCT
CTATTATAAAAAGGAATTTTCTTTCCGTAAACAATCTTCCTATTATTGTT
GGAAAATTGCAAATCAAGCTGACAATATATTGCGGACACCTTTTCAATAT
ATTGCCGGCACTCATATATTTTCAATATATTGGCTGACGATACATTGTGT
AGTGTATGTAGCCCTTAGGATTAAGACAATTTCGATGTCAATCGTACTCT
ACACGGAGACGAGGTTATACAATTCTTCAAGTTTAGTTTAAATATGTTCT
TTTCTATTATCGTTTTTAGACTGTATGTGCAAATCCAGCACCGTGTGTGA
TCCAATTTAAAGAAAACGTGAGGTGTGTACCGAGAGTGGAAAGTGATTCG
GTAGATTGTATCTGTCAACCATATTGGAGAGGAGACCACTGCAACGAAGA
AGAAAAAGGTTAGATTTGGTCTACCGCTTATTGTTATTTTACAATGGTTG
CTATCTTTTCGCCCTATTAGAGTTTTATAATGTTGATTCTTTAAAAAGTC
CAATATTAAATACTCTTCTCCAAAGAAACACTGAAATATATCATTTAACA
TTCTTTAAAATTCGTTTAAAAAACTGAAATCATCAGCCTAATGTACTTTT
GTAAAACCTTGTGTCAACAAGTAGATTGGCCTCCTCAACATGAGCCCTAC
GACATTCTAAAAAAGCTAATTGAGGATCAATTTTTTTGTTCTGTAGAAGC
TAAACATTACACTATCCAAAGTGGTGATGTGGAACTTGGTAGAAACGTTA
TTCGTCCACAAGANAGGATCAATTTTTTTGTTCTGTAGAAGCTAAACATT
ACACTATCCAAAGTGGTGATGTGGAACTTGGTAGAAACGTTATTCGTCCA
CAAGAATACATCTCCATCTCAATGTGGGTGAAACTGGCGCAAGTTCAAAC
ACCGAACATCGTATTGATAGACATCAAAGCTGCCAATTGGAGATTCATTG
CCGAATGTATGGAAGATTCTTATGGAGGACAACAAATCATTTTTCAATTA
ACGAATCTTGACAGTGACCAGATACACGATCAAACTTATGTTGTAAGTTT
ATATTTAATAAATTTCTTTGATTTATTCAGACTGACTCCTTTCCTACCAC
ACTTTTCTTCCTTAACCTGTTCTGATGTATAAGACCTTTAAATTTGGTAT
CTTTCAGTGAAGAGTAAAAAATCATTTTTAACAGTGGACTGACTTTCCAC
ACCAATACGCTTTTCTTATAATTTGTTAAAAACGCGTACTGTATGTATTT
TATTTCTAATACTACTTGCCCTTTCAAGGGTCTGGTGTAAAAATACAGGC
TTTTTTAAGATTTCTTAAGAAATTGCCAAAATTGAGGGTGAAATATTCTT
AGCATATTCCAACTTTTTTTAGACTTGATCTTTATACAAACACGACAAAT
TATAATTTGAGATTTTTGAGTGCACATTAGGAGCTAAAATTATATTTCTG
CTTCACAGTTTCAATTTAGTCAAACAAAAAACCCAGTTTTTTCTGTTAAC
CAAAATACAAGATTACTGTATTCTTATCAAATCTGTGAAACTCACCCTAG
AAGGTATTCTTAAGATATTCTTACGATTTGGCCAATTTTCGCCCTGATAT
TCTTATGGAAGTTATTCTTATTAAGCGTGTATAGACTATGCTTGTGTACC
AAAAGTTTAAGGTACCCTGTCTCCCTGAAACGTAATTAAGGTTTGAATAT
GGGACTTACTATCGTAAACATTTATTTCTTCATGCTAACTAGTTAGTCGG
AATAAGATTAACCTAGACAGCCATTTTGAAATAAATTAGTTTTTGCTAAT
ATATTTGAAAACTCAAAGGGTTTCAAAATAAAGCAGGAATTTATTCAGCG
AAACCAAGGAAACTAAATCAAAATGTATTCAAAGAATACTCAATAATTCT
ATATGTGCATTTGGGTTTGAATTGCATGAATTTTCAGGGCAGGATTCCAA
ATTTCCCATCAGTAAAATATTTTCAAGTATGAATCATTCATTATGTATAT
CCGCTAATGAGAAAGCTTGAAATACCCAAAAATCTCAATATATTTCGACT
TTGATAAAAATCGTCTGTAAAAAATATTCATCGGCAATAATTTTTCATCG
GTAAAAAGAAAAAACACTGGAAACAATTCATCGGCATAAAACTTCATCGA
TGATTTGAAACCAAGCGATCACCTTTTAAACGACGAATTTCCTACTGTAC
GAAATAAAACAAGTGATACTTTTATGGACCTACCTGTTCATAAAACGAAT
AATAAAAGTTTAATGAAGGCAATGTAGCAACAAAAACTGAATAAAATNAA
ACAAGTGATACTTTTATGGACCTACCTGTTCATAAAACGAATAATAAAAG
TTTAATGAAGGCAATGTAGCAACAAAAACTGAATAAAATATTGCAAATTG
GTGCCAAAAGTTTTCTTGTCTTTGTACAAAAACTAAGGTCCAAAAAACCC
TATTTTTGGGCATTTTTCGGCGCAAAGATTTTTTTATCATAAAATGAGCT
TTTTCATATTCAGCATACTCCAGGAAACACACTCAAAGCACACTCCTTTA
GACCTCCCGGTAGGTCCAAAGAAGAAATTTAATAAAGAAAATACATTTTT
CTTTTAGGCAGGAGGTTTGAAGGAGAGTGAATGGTCGTTGTTGGCTTGTT
CCCTTGATTTCCGTCTTGATAGAGGGAACGTGACATGTTTCTTTAACCAA
GATGTATTATACCACTCAACCTTCCACGCCAATCAAACCTTCGCTGATCT
TTACNGTATTATACCACTCAACCTTCCACGCCAATCAAACCTTCGCTGAT
CTTTACCTCAATGTTAACACAGTACCAATGACCACAAGCGTTCCAGATTC
ATCTTTAAAAATTCATATGAAGAATATCTGGTGGTGGCCCAAAACATTTT
TCATCCCAGAAGAAATCCCTTCAATGTTTTCTCAAACTTGGTTCCCAAAA
GGACGAGCTTATTACCACGTAGGAAATAGTATTCCAAGTGTATCGGGAGA
TATCAAACATTAGTGACGAGTTGACTAAATAATCTAAATGTAATTAAATC
TCTCCCCCAAAGCCGAATGGGAGTTAAATAACCGCAGCGGCGAAGCAAAA
TTACATATGGAAAAAGATCCATACCAGACGTCAGTCAATAATTGTTGGCT
AACCCAAAGGCGGATCGTAATTGCAGACGGCGGAAATGAATCATAACAAA
CTCAAGAAAATGTTTTGTCTCTTTAGATATAAAAACAAACTTCGAAGAGG
CAAAAAAAAAAACAAAGACAATTTTAATAACTTGATACCTTATGCAACAT
TGAATTGAGAAAATGTTTTAGTTATGGCTTAGAATCTAAAACTTATTTGA
AGGCTTCCATAAGTTTCATTAAAAAATACCATGTACGTTTAGTATTTGGT
ATTTAAATTTAAAACTTTTTTAAAATTTTACGATTTTTCAATTTTTTTAC
AAGCTATAGGAACACGCATCACTGTGACAATTATCAGAAAGATAAAGCAA
TGTAAATAGTTTTTTTTATCGTCAACTCTTTCAGTTCCGTACCAATCTTC
GAAATGTACGATAGAGCGGTGGAAGTTTCAAATTCCCGCCACATTTTCAG
GATTTTTCTCCTTTTTCTCTCAGGCACACCGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022461-exon-sc0000421-1575043694:58685..59061 | TCONS_00022461-exon-sc0000421-1575043694:58685..59061 | Clytia hemisphaerica | exon |
| TCONS_00022461-exon-sc0000421-1575043694:56004..56142 | TCONS_00022461-exon-sc0000421-1575043694:56004..56142 | Clytia hemisphaerica | exon |
| TCONS_00022461-exon-sc0000421-1575043694:55370..55715 | TCONS_00022461-exon-sc0000421-1575043694:55370..55715 | Clytia hemisphaerica | exon |
| TCONS_00022461-exon-sc0000421-1575043694:52779..53804 | TCONS_00022461-exon-sc0000421-1575043694:52779..53804 | Clytia hemisphaerica | exon |
| TCONS_00022461-exon-sc0000421-1510915933:58685..59061 | TCONS_00022461-exon-sc0000421-1510915933:58685..59061 | Clytia hemisphaerica | exon |
| TCONS_00022461-exon-sc0000421-1510915933:56004..56142 | TCONS_00022461-exon-sc0000421-1510915933:56004..56142 | Clytia hemisphaerica | exon |
| TCONS_00022461-exon-sc0000421-1510915933:55370..55715 | TCONS_00022461-exon-sc0000421-1510915933:55370..55715 | Clytia hemisphaerica | exon |
| TCONS_00022461-exon-sc0000421-1510915933:52779..53804 | TCONS_00022461-exon-sc0000421-1510915933:52779..53804 | Clytia hemisphaerica | exon |
| TCONS_00022461-exon-sc0000421-1491911889:58685..59061 | TCONS_00022461-exon-sc0000421-1491911889:58685..59061 | Clytia hemisphaerica | exon |
| TCONS_00022461-exon-sc0000421-1491911889:56004..56142 | TCONS_00022461-exon-sc0000421-1491911889:56004..56142 | Clytia hemisphaerica | exon |
| TCONS_00022461-exon-sc0000421-1491911889:55370..55715 | TCONS_00022461-exon-sc0000421-1491911889:55370..55715 | Clytia hemisphaerica | exon |
| TCONS_00022461-exon-sc0000421-1491911889:52779..53804 | TCONS_00022461-exon-sc0000421-1491911889:52779..53804 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000421 | supercontig | sc0000421:52779..59061 - |
Blast
The following BLAST results are available for this feature:
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