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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022463 ID=TCONS_00022463|Name=TCONS_00022463|organism=Clytia hemisphaerica|type=transcript|length=1448bp
aaataacaaattttgaaactggatAAAAGTACACCAAAACGAAAATTTGA
CTTATATCCTGAACAGCAAGTCAGTATTCCAATGCAATTGACAATCGGAC
AAGAATATTATATGGAAGCACTACATAAAGCCGGGACGGGTGTTGATCAC
TTAAGTGTTGGAGTGACGTTACCAAGTGGACGGAATGAATGGCCCATACC
AAAGAAATATATACGATTCCGACCACATAAAGATCTGTTATCGACCCGCT
TGAACGTGCCCTGTAATTATGAATACGAGCATCCCGCAACTTCAACCAGC
GGAAATACTGCAACAAAGTCAACATTAACTTCAAGTGAAAGAGTCGTAGG
CGATATCGAAGCACTTATGGGAGATGATGAAGACTTGAACATCCAGCCTG
TAGAACACAAAAACCTGAATAACGGagttcaaaacaaacttttcaatttc
aacgaAAATGAAGAGCGAGGCGAAAAGAATTTCGAACCAAAGGATGCGTC
TTCGTTTCAAGGggaacaaaatcaaaattcgTACAATAATGGTGTTGAAA
GCTTCGGTGGTAGCCAGGCTCAAGAACGTCAATACAGTGTAGAGCCTTTG
CACGAAGATCGACAGCCGCAATTACGACAGAAAGTAGAATATTACGTCAC
TCGAAAGTTGCCCGATCAAGTGAATGAAAAAGCTGTAGCAAAAGTCAAAA
TTACGCACTTAGAATTACCGTTTGGTCGCGCGGACGGAAAAATCGCTGAT
GACGCCTTGACTATTTTGGGACGCatggataaaaaacaaagaagtaaaat
caaaattgtaaGAAGTAAAACCGGAGGTTTTACCTTAAGCGGATTACCGT
CGGCTCTCTCGGAGAAAGAAGTTAGCCAAGTTGCCAAAGGACTTGCCTCA
GTAATGGAGGAGAAAGAGAGTaagggaaaaaaagaaaaggcgAAAAATct
gaagaatgaaaaaaataagggaTTTGCAGATCTGGAAAAGGAAGATTCGC
AAAAACAACACGGAGCTGATGAGACGCCTGAtgtcaataaaaatgaaaaa
gaaaaacaaagttcTGACGATTCACCCAAAGAAGATGGAAAGAAtaacga
aaaagaagaaaaatctgaAGAATATCAAACATCAACTGAATTAGAAACAG
CTATTGAAAAGTTGAAGGAATCCGGTAAAGAGGAACACCCAGGGGAAACT
GAGAAAGAGGAGCATCCAGTGGAAACTGGGAAACAGGACCATCCAACTGA
TGGAGGGGTACAAGAGCCAGAACCAAATGGCGGACATGGAGAATATTTCA
ACCCAGCCTTGATTGCCATCAAAGAAAAGGAGGAACAAGTAAAAATGCAG
GCAGCTGGAGGGGTACCCCTACCACCCATCACCGAGCACATCAATCCACT
CCCTGAAGGACCACCACCAGATGCAGAACCTATAGACACTACCTCTCC Run BLAST on NCBI transcript from alignment at sc0000421:79911..87106- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022463 ID=TCONS_00022463|Name=TCONS_00022463|organism=Clytia hemisphaerica|type=transcript|length=7196bp|location=Sequence derived from alignment at sc0000421:79911..87106- (Clytia hemisphaerica)
AAATAACAAATTTTGAAACTGGATAAAAGTACACCAAAACGAAAATTTGA
CTTGTAAGTACAGTTAACCCTCGCTCAACTAAATCTCTCTGTAATTCGAA
CAAATAAGATTCCCCGTTCCAGTTGGAATTAGGGAGAGTCTGTATAATAA
CGATCTAATGTTATCCACTGTACCACAAATCTTGAAAATGAACATCTAAC
TTGTGTAGGTTTTCTCAACCTGGCTTATTACCTTAAGGGAACTAACGAGT
AGGCCTTTTTGTACCTTCACTTTTTGCTAAAACTTTGACTGTTAAGTATT
TGAATTGGGGAAGGTTCCACGGTTGACAGAGGAGTGGAAATTTCTGGAAT
TTTTCACGGAAACTTTAAATCTCAAAGAAATTTTTGTCGGAATAGACCAT
ATCGGAGTTTTTAATTTTTTTTTAAAAAGCGATGCATTGTGGGATTGTTT
CGAGTGTATCACAATAGAAATCTCTTAGGAATTCCTCGAGGGAATTCTTT
CGTAATACACTCGAAACGATCCCACGATGAATCGCTTTTTTAGAAAAATC
ACAAACTCCGATAAGGTCTATTCTCAAATGTTTTACAATAATGTTTTCTA
GATATCCTGAACAGCAAGTCAGTATTCCAATGCAATTGACAATCGGACAA
GAATATTATATGGAAGCACTACATAAAGCCGGGACGGGTGTTGATCACTT
AAGTGTTGGAGTGACGTTACCAAGTGGACGGAATGAATGGCCCATACCAA
AGAAATATATACGATTCCGACCACATAAAGGTGAGATTATGAATTTTTGT
AAAGACAAGTATCTTGGTTTAAAGAAGGGTAGATTTAATCAAGTTTCTCG
AAGACTTTTGTTTATTTTAAGGCAAAAATGGAAAGATTTTATCAAAATTT
TAGCTCGAAAAACCTTTTACAACATTGCAGTACACTTTTTCTCATTACGA
CCTTTACGTTGCACTTTCATCAGCTTAAAAGACGTGCCCTTTCAAGTCCT
TTCACTAGTCGATGCTCCCTCACAAGTACCTTTCTTATAATCCATCTCTG
GCAAAATATCACGAGTAGCCAGTACGCGCTGGAAGCCTTCGGTTATAAAA
CCTTAAGGTGTTTGATACTGGTTTGTATATACCCCTCGAGATACAGTGCC
ATATTGTGTTGTTACAATAAAAAATTGATCTCGAAAGTCGTGTCAAATAT
AAGTGAATAGGTCACCGTGCAGCCATATGTATATTCGGAAATTATCAATT
TAAGCCTTTAGGGCTAACTTTCCAGTTCAGCTGGTTTATTATGTGTCAAC
TAGCCTGTAGAGGTCCAAATTTTTGAGCCACTTGGCGGGAATATTTTATT
CAATGATTGCAGTATCCAAATTATTGTATTTCATTTTCTAAATCTCAATA
TTAGACTATTATACTGCGTATATATCAGTATAATTTCGAAAGAAAAAAAT
CTATAAATATTTGCGTATCTTTTTGAGAATTTCATTTGAAAATGTTTGTC
GACTATAACAATGGAATCGCTGTGAAAAAAAACTGGCCTTGATAATTTGT
AAAATTTGTAAAAGTTTTTTCGTCGGATATAATAATCTTTGAATAAGGGG
AAAACTGTGAAATCAAGAGAAATAGGCCGAAAAAGCTGACTTAAACTTAC
ACGCTTTTTTTATAAGAATACACTTTATAAGAATGTCCATGATGAAAATG
GCCAAAAAATTAAAAATATGCTAAGAAAATCACCATCATGGAATTTGCTA
CTCAAGCTAAGAATGGCATTTTTAGATTATTTTTGATTATACATTGTCAA
TTACCCCCCAAGTAAGGTTCGCTCCTTTCACAAAAATGCCATTTATGCTC
GAGACGTATTTACTAAATGTTTTAATCTAGTCTGAATAAGGATCTGATAA
GGACCTAAGAATGCTGTAAGAATATTTTAGGATGATTTTCCCTAAAAAGT
TAAGAATATCCATGATGAAATGGATTTACACCATTCTTACAAAAAAAACG
TGTATTTTTATCGCTTCCTTGTTATTATTCAAGAAGCATGTATAACACTA
TAACCTGCTGAATTAAAAGAAAAGCTATTGTTATTTTTATAAGGAAAGGT
ACCGAGATCCTTTAAATTCTTTTACTCTGGAGGTGCAAAGAAATATGATA
TTAATTGAAAAATATAATTTTTTTTGAAAATATTTTTCGACTATATCAAA
AGAATTGCTGTGAAAAAACTGGCCTTAATAATTCATGTCTTAATTTTCAG
AATAATGCGAATCTATTTCCAACACCTTATTGAAAAGAATATATCTACTA
TTTTCATTTGACTGAAAAAAGCATAATTATTAGAAAGTCATCAAAATTGA
AAAACGAAGAATTTGTCTCGCTGTTAATAACTGATTTCACATACAATAAT
AATTTCTTGGAGCCCTTCTATTGTGGGAATTGTTATTGAAATTTAAAGAT
ACCCCGTCGCGTAGTATCCTATACAAAACGAACGAAGAAGTTATCCGAAA
TGACAATTTCTTGATGAAAACTTATTTTTGAAAATTGCGGACGTTTAAGG
ATTTGTTTTCAAACAAGTCGATATTGTTTGCTTAAACTGCAAGCTTTTTT
TATATTGAAAGGACGCGGTTGTGGAAAAATCTTACAGAGAAAGGAAAAGG
AAAAAAATTTTTTAATCACAGCATTCAATTGAGCGCAATATAACAAATGA
CCTGATATAAAACATGTCCCTTTCAAATATTTATATATGAAAAAAAGGGA
TATTTGTGAAAAACTTTAAAAAACCTTTAAGAGTTATTGTTGCAGCGGAT
AAGTTGCTTTTTTGAAGAATGGATGTTTGGGCACACACCTTCTTATTGTC
ACTATTTTTCTCATTTGTGGTAGGAGACAAGTCACGTGGTATTTTTCAAT
TAGAGAAAGAGAATTACGCCATTGTACCTTCAGTTACGCCAAAATTAAGA
ATGGTTACGAGTAGCCAATTAAAGTGCTTCACATATTGCTTACGATCGTT
TACAAAATGTACAGTTGTGGTCGAAACATTGAGCATCAACAACAAGTACT
CCTGTCAAATTTACGACTCGACTGATTTTGGAGACGAACATTTTGTTGAA
AAAGAGAACTCAAAGATCTATGTTTCCTTTTCTGAACCATTAATTGTTGG
AAACATTGAAGACAACGTTGAACCTGATGGTCAAGCATCTCCATTAGAGA
GTTGTGAAATTGCCAAAGACAAAGATTTTAAAAGTGGTGTTTATCTCATC
AAACATAGCAATGGAGAGTCGAGACATGAGTATTGTGATACCTCAGATAC
TGCGGATCAGTGGATTAACATTCAACATCGTTTATCGTCAAGTGGAGATG
GAGCCTTCAATAAATATATGTATTGGCATAAAGCAGGACATAACGATGGC
GGGAAATGGCTTGGATTGACCAAACTCTTCACTCAAACAAACGGGAAATC
AAACACTCTGGTTCGATTGGAGGTTCGCTTAAACGACGATCGATTCTTGT
ATGTGATTTTCAAAGGGTTTTATGTTGAAAACGAAACGAATAAATTTCGG
TTGCATACTGGGAATTATTTGGAGGGGGATGCATGGCTTGGTGAATTATG
GAAGTACCATGATGGGATGAAGTACTCAGTGCGCGACCAAGACTTCGATA
CTAAATCCGGTTCTTGTAGTCAAAGTTTTGGTAATTTTGGATGGTGGTAT
AAAGCGTGTATAGGAATCGATTTCAACAGTTTAAAATTCAAAAACGGTAC
CATGATTCAGTCGTTCAATGAAGGTGTAATGTTTATGAAGATTACTGACA
TAGCAACTTTGGACTGATGCAAGTTTGGGTGTCATATTTTGACCACGTGA
TCGTAGTTAAGAGACTTTGAACTGATTAAAGTACGGTGACTATGGAAAAT
TCTCCTTAAAAATTTATTTTTACAAATTATGTCAGCAATTCGAAATCGCG
TTTTATGAGACAAAATCTGGAAAAACAGCCCAGAAATTCCCGTACTACAG
AATTTCGGCGAAATTTACCATACACATCCAAACTAATACGTAGACAATCC
AGTTAAAAAGCAAACTAGATAAGAATAAACTTTGTTAGCATTTACGTTTT
TTAATAAGAACATCCAAAATTTTGGATGCCTTCGGATGTTCTTAACTTTT
TGAGTTTCAAGGTTAAAAATGTTCTTAAAATGTTCTTATTTTCACCATTT
TGAGGGTATTCTCGTCTATTTTCTTAATAAATCGGGTCTTTCAGGGTCCT
CAAAGCCTTAAAATGTTCTTAAATTGTTCTTAGTATTTTGGCCATGGAAG
CCTTATGTTTTTATATAGTTTGTTCGTATATAAAAATAATGTTTATATTA
AAACCCTTAAACTGAAGATTGTTTGAATAAAGACATGTAACTGTCAGTAG
TGAAGAATGACATCACTGCTTCATCTATCATTATTAGCATATAAACAGAT
GTACATGTTTTCTTTTATATAAGCAATAACCTTTTTGAAGCATGGCTTGT
ATTATACTGCATTGTGTGTTAGAATAGAAAAAAAAGATAAATTGAAAAAT
ATTTCAGGCTAGCGTATAATATGCTTTATGCTTAGGACATCTGCAACGAG
CCTTCATATACTTTACAAGCGTAATGCTTATAAAAAAATATGTAGTCAAA
AGTAATACCGTGTTGGAAAGATGTGATTTTAAGTGGGTGATCTCAAGGCA
TAAAACAATTCATTCAATTCGAAAATGGACATTTTTGCTACAGGAAAGAA
GCTGAAACTTTGAGTATTGCTGTTTTCAAATTTTCACGTAGCGCGTTTGA
ATCATGCAATCAACTTTGTTTTAGTTTGTTCATTATGGACCTTCCCTCAT
CGAAAAATTGCAATTAACCAACTCTAATCCGATTTTAATAAACTTTTTAT
TGTAACTATTTTGCTCTTACTGATTTGAATTATTTTGATGGCAATTCATC
AAAATATCAGAAAACATCTTTGAAAACTCAACTTGACAAATTTTATCTAT
CATAGATCTGTTATCGACCCGCTTGAACGTGCCCTGTAATTATGAATACG
AGCATCCCGCAACTTCAACCAGCGGAAATACTGCAACAAAGTCAACATTA
ACTTCAAGTGAAAGAGTCGTAGGCGATATCGAAGCACTTATGGGTAAGTA
ATTTAATAAATAGACTGATTCAGCAAAATAAAGTTAGGGACTATCTTCAA
GCAAACCCCAAGCAGGCTGTATGTATTCTTAACTGACATAAATTTCGAAT
CAAAACAAACGAAACAAAAACAAACATAAAACTATGTGCAGGTCCAAACG
GGAAATATCTTAAGACTTTGGGCTATCAAGGTGTTTTTAAATCATCCTGT
ACATATTCTTTCTACCATTTCTGAATCGGTCTGCACCTTTCTCAATTGTA
CAAAAGTGCTAGAGTCTTTAGAATCGGCAAATAAAGTAGCTCCTGAAACC
CATTTTGCAGTCAATTCTTCGTAATTTGAACCTCAAAAATTCGAATTCCC
AATCAACTCGATTCTCCATAACCTGAACAGTTCTTAGTCTAACTTAGACT
ATTTTGTTTGCTTCGTTACTCGAATTTTCTTTTTGTTATTTTGTTTGCTT
CGTTACTCGAATTTTCTTTTTGTACCTTGGGAGAATCATATGTTGAATTG
AACTCTCTTCATAACTCGAGCTATCCAGACTCGAGCGATTAATTGTTCCA
AAAAAATAAATCTCAGGCCGGTCGGATCATTGAGTTCTAAAACCTGAATG
TCTAGAGATGAATCTTTGACTTTTCTCAAACAAGAAAAGTGCAGCCTTAA
GCTTTGCGCCGCTTTTAGAATTACGGACTGAACCTTGCACTTTTTGTTTT
CCCGTATCATATTTTTCGAAATCAAGCGATGGATTTTACTTTCAAACCAC
GCAAGTCACGTGTTTCAGATGGGAAATAAGTATCATTATGGTCCATTTAA
GAGTTCAAACTTTACGCTTAATAGGGCTCAACCTTTGGGTAATTGAGTTG
ACAGATNGAAGTGATGATCCATCTAAGAGTTCAAACTTTACGCTTAATAG
GGCTCAACCTTTGGGTAATTGAGTTGGCAGACTCAACCTAAGTATAATTA
TTTTTTTAATTTACTTAGGAGATGATGAAGACTTGAACATCCAGCCTGTA
GAACACAAAAACCTGAATAACGGAGTTCAAAACAAACTTTTCAATTTCAA
CGAAAATGAAGAGCGAGGCGAAAAGAATTTCGAACCAAAGGATGCGTCTT
CGTTTCAAGGGGAACAAAATCAAAATTCGTACAATAATGGTGTTGAAAGC
TTCGGTGGTAGCCAGGCTCAAGAACGTCAATACAGTGTAGAGCCTTTGCA
CGAAGATCGACAGCCGCAATTACGACAGAAAGTAGAATATTACGTCACTC
GAAAGTTGCCCGATCAAGTGAATGAAAAAGCTGTAGCAAAAGTCAAAATT
ACGCACTTAGAATTACCGTTTGGTCGCGCGGACGGAAAAATCGCTGATGA
CGCCTTGACTATTTTGGGACGCATGGATAAAAAACAAAGAAGTAAAATCA
AAATTGTAAGAAGTAAAACCGGAGGTTTTACCTTAAGCGGATTACCGTCG
GCTCTCTCGGAGAAAGAAGTTAGCCAAGTTGCCAAAGGACTTGCCTCAGT
AATGGAGGAGAAAGAGAGTAAGGGAAAAAAAGAAAAGGCGAAAAATCTGA
AGAATGAAAAAAATAAGGGATTTGCAGATCTGGAAAAGGAAGATTCGCAA
AAACAACACGGAGCTGATGAGACGCCTGATGTCAATAAAAATGAAAAAGA
AAAACAAAGTTCTGACGATTCACCCAAAGAAGATGGAAAGAATAACGAAA
AAGAAGAAAAATCTGAAGAATATCAAACATCAACTGAATTAGAAACAGCT
ATTGAAAAGTTGAAGGAATCCGGTAAAGAGGAACACCCAGGGGAAACTGA
GAAAGAGGAGCATCCAGTGGAAACTGGGAAACAGGACCATCCAACTGATG
GAGGGGTACAAGAGCCAGAACCAAATGGCGGACATGGAGAATATTTCAAC
CCAGCCTTGATTGCCATCAAAGAAAAGGAGGAACAAGTAAAAATGCAGGC
AGCTGGAGGGGTACCCCTACCACCCATCACCGAGCACATCAATCCACTCC
CTGAAGGACCACCACCAGATGCAGAACCTATAGACACTACCTCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022463-exon-sc0000421-1575043694:87054..87106 | TCONS_00022463-exon-sc0000421-1575043694:87054..87106 | Clytia hemisphaerica | exon |
| TCONS_00022463-exon-sc0000421-1575043694:86327..86505 | TCONS_00022463-exon-sc0000421-1575043694:86327..86505 | Clytia hemisphaerica | exon |
| TCONS_00022463-exon-sc0000421-1575043694:81964..82101 | TCONS_00022463-exon-sc0000421-1575043694:81964..82101 | Clytia hemisphaerica | exon |
| TCONS_00022463-exon-sc0000421-1575043694:79911..80988 | TCONS_00022463-exon-sc0000421-1575043694:79911..80988 | Clytia hemisphaerica | exon |
| TCONS_00022463-exon-sc0000421-1510915933:87054..87106 | TCONS_00022463-exon-sc0000421-1510915933:87054..87106 | Clytia hemisphaerica | exon |
| TCONS_00022463-exon-sc0000421-1510915933:86327..86505 | TCONS_00022463-exon-sc0000421-1510915933:86327..86505 | Clytia hemisphaerica | exon |
| TCONS_00022463-exon-sc0000421-1510915933:81964..82101 | TCONS_00022463-exon-sc0000421-1510915933:81964..82101 | Clytia hemisphaerica | exon |
| TCONS_00022463-exon-sc0000421-1510915933:79911..80988 | TCONS_00022463-exon-sc0000421-1510915933:79911..80988 | Clytia hemisphaerica | exon |
| TCONS_00022463-exon-sc0000421-1491911889:87054..87106 | TCONS_00022463-exon-sc0000421-1491911889:87054..87106 | Clytia hemisphaerica | exon |
| TCONS_00022463-exon-sc0000421-1491911889:86327..86505 | TCONS_00022463-exon-sc0000421-1491911889:86327..86505 | Clytia hemisphaerica | exon |
| TCONS_00022463-exon-sc0000421-1491911889:81964..82101 | TCONS_00022463-exon-sc0000421-1491911889:81964..82101 | Clytia hemisphaerica | exon |
| TCONS_00022463-exon-sc0000421-1491911889:79911..80988 | TCONS_00022463-exon-sc0000421-1491911889:79911..80988 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000421 | supercontig | sc0000421:79911..87106 - |
Blast
The following BLAST results are available for this feature:
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