TCONS_00022491 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022491
Unique NameTCONS_00022491
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length872

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022491 ID=TCONS_00022491|Name=TCONS_00022491|organism=Clytia hemisphaerica|type=transcript|length=872bp
NCCCCCCCCCCCTCCTCTGGGCAGTGTAGTGTctgctgaaaaagaaaaaa
acaggaTATTATGAGCCCTGTGGGAGTCTTTATTGATGTGTAAATATCAT
TTTCGAGTTTAATGGAATGCACTCAttgtaaataaaaatctttattttct
aatttttgttaCTTATTAATTTTTCCGTTGGGCTAAAAAGTCTTTTGTTT
TTGCATCCTCGTTTAAAAAAGTGCCAAGCCTTTAACACATGAAGTGCTTA
ACTTTTATCGCACGACGAAAAAAATAAAGGCAGTTTTTATTGTAGCAACC
ATAATACTAAGTGGGCTAAAAGTGTGAAAATCTAAAAAGTCTAAAGCACG
TTCATAACAATTTAGGGGGATAAACTGGACTTTTTACAAGATAGACAAAT
GCTAAACTTTGCAGAACAGCATTAATATATTCTTTATTATTATAGcgttt
aaaatttaaaagttctATCTGAAAAAAAACCCGAGGTCCCAAGTACAAAG
TTTCAAGGGTCCCGAATTAAAATATATCCAAATTCTATCTAAAAAAATGT
TTCCCAAACCCGAAGTCCCGAGGTCTCGAattgaaatttatcaaattcCT
GAGAAAATTTATACAAACataaagtcccgaggtcccgaggtcccgaagtc
ctgaattgaaatttatcaaaattctattagaaaaacattttttacacaaa
cctaaagtcccgaggtcccgaagtcctgaattgaaatttatcaaaattct
attacaaaaacattttttacacaaacctaaagtcccgaggtcccgaagtc
ccgaattgaaattcatcaaaattctattagaaaaacattttttacacaaa
cctaaagtcccgaggtcccgaa
Run BLAST on NCBI

protein sequence of TCONS_00022491-protein

>TCONS_00022491-protein ID=TCONS_00022491-protein|Name=TCONS_00022491-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
RDLGTLGLCKKCFSNRILMNFNSGLRDLGTLGLCKKCFCNRILINFNSGL
RDLGTLGLCKKCFSNRILINFNSGLRDLGTSGLYVCINFLRNLINFNSRP
RDFGFGKHFFR
Run BLAST on NCBI

transcript from alignment at sc0000421:115334..116205

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022491 ID=TCONS_00022491|Name=TCONS_00022491|organism=Clytia hemisphaerica|type=transcript|length=872bp|location=Sequence derived from alignment at sc0000421:115334..116205 (Clytia hemisphaerica)
ttcgggacctcgggactttaggtttgtgtaaaaaatgtttttctaataga
attttgatgaatttcaattcgggacttcgggacctcgggactttaggttt
gtgtaaaaaatgtttttgtaatagaattttgataaatttcaattcaggac
ttcgggacctcgggactttaggtttgtgtaaaaaatgtttttctaataga
attttgataaatttcaattcaggacttcgggacctcgggacctcgggact
ttatGTTTGTATAAATTTTCTCAGgaatttgataaatttcaatTCGAGAC
CTCGGGACTTCGGGTTTGGGAAACATTTTTTTAGATAGAATTTGGATATA
TTTTAATTCGGGACCCTTGAAACTTTGTACTTGGGACCTCGGGTTTTTTT
TCAGATagaacttttaaattttaaacgCTATAATAATAAAGAATATATTA
ATGCTGTTCTGCAAAGTTTAGCATTTGTCTATCTTGTAAAAAGTCCAGTT
TATCCCCCTAAATTGTTATGAACGTGCTTTAGACTTTTTAGATTTTCACA
CTTTTAGCCCACTTAGTATTATGGTTGCTACAATAAAAACTGCCTTTATT
TTTTTCGTCGTGCGATAAAAGTTAAGCACTTCATGTGTTAAAGGCTTGGC
ACTTTTTTAAACGAGGATGCAAAAACAAAAGACTTTTTAGCCCAACGGAA
AAATTAATAAGtaacaaaaattagaaaataaagatttttatttacaaTGA
GTGCATTCCATTAAACTCGAAAATGATATTTACACATCAATAAAGACTCC
CACAGGGCTCATAATAtcctgtttttttctttttcagcagACACTACACT
GCCCAGAGGAGGGGGGGGGGGN

Coding sequence (CDS) from alignment at sc0000421:115334..116205

>TCONS_00022491 ID=TCONS_00022491|Name=TCONS_00022491|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at sc0000421:115334..116205 (Clytia hemisphaerica)
cgggacctcgggactttaggtttgtgtaaaaaatgtttttctaatagaat
tttgatgaatttcaattcgggacttcgggacctcgggactttaggtttgt
gtaaaaaatgtttttgtaatagaattttgataaatttcaattcaggactt
cgggacctcgggactttaggtttgtgtaaaaaatgtttttctaatagaat
tttgataaatttcaattcaggacttcgggacctcgggacctcgggacttt
atGTTTGTATAAATTTTCTCAGgaatttgataaatttcaatTCGAGACCT
CGGGACTTCGGGTTTGGGAAACATTTTTTTAGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012615XLOC_012615Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022491-proteinTCONS_00022491-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022491-exon-sc0000421-1491911889:115334..116205TCONS_00022491-exon-sc0000421-1491911889:115334..116205Clytia hemisphaericaexon
TCONS_00022491-exon-sc0000421-1510915933:115334..116205TCONS_00022491-exon-sc0000421-1510915933:115334..116205Clytia hemisphaericaexon
TCONS_00022491-exon-sc0000421-1575043694:115334..116205TCONS_00022491-exon-sc0000421-1575043694:115334..116205Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000421supercontigsc0000421:115334..116205 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0535109	0.0521816	0	0.177827	0.938112	0.627261	4.60938	5.21694	1.75861	1.8432	0.86742	1.60371	0.0355884	0	0.0607705	0.032608	0	0	0	0	0	0	0.0613546	0	0	0	0	0	0	0.060512
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022491 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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