|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022507 ID=TCONS_00022507|Name=TCONS_00022507|organism=Clytia hemisphaerica|type=transcript|length=3892bpRun BLAST on NCBI transcript from alignment at sc0000424:124146..202596+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022507 ID=TCONS_00022507|Name=TCONS_00022507|organism=Clytia hemisphaerica|type=transcript|length=78451bp|location=Sequence derived from alignment at sc0000424:124146..202596+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00022507 vs. Swiss-Prot (Human)
Match: ZN420 (Zinc finger protein 420 OS=Homo sapiens GN=ZNF420 PE=1 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 9.386e-36 Identity = 85/267 (31.84%), Postives = 133/267 (49.81%), Query Frame = 3
Query: 2097 YECRICYRRYDTEQKLHFHQQVHARARPPSIGDYPPEVGPPPSSLGAPNVEY-----------CTECPESFVNDEEYRKHLLVHM----FKCRYCNIVLESETEYVVHMKTHSDTIPLYVCYICDKQLGSVQQLTRHILSHPDELNFYCKECNKSFTHRTQLNHHMAVHSS-RPYTCKECGKKFAHKTHLRRHEVVHSGLRPHKCRVCNQSFSRKSSLSRHYFIHTTEKPFVCPICEKGFNRKGRLKNHLNIHIREGYSQLKDYVIE 2849
Y+C+ C + ++ L HQ++H +P Y + S G+ ++ C EC +SF+ + +H +H ++C+ C + + H + H+ P YVC C K L +H H E + CKEC K+F +QL H +H+ +PY CKECGK F+H + L H+ +H+G +P++CR C ++F++ S LSRH IHT EKP+ C C K F R +L H IHI E + K+ I+
Sbjct: 419 YQCKECGKAFNRGSLLTRHQRIHTGEKP-----YECKECGKTFSRGSELTQHERIHTGEKPYECKECGKSFIRGSQLTQHQRIHTGEKPYECKECRMAFTQSSHLSQHQRLHTGEKP-YVCNECGKAFARGLLLIQHQRIHTGEKPYQCKECGKAFIRGSQLTQHQRIHTGEKPYECKECGKAFSHGSQLTLHQRIHTGEKPYECRECRKAFTQSSHLSRHQRIHTGEKPYQCKECGKAFTRGSQLTQHQRIHISEKSFEYKECGID 679 HSP 2 Score: 139.043 bits (349), Expect = 1.710e-33 Identity = 84/251 (33.47%), Postives = 127/251 (50.60%), Query Frame = 3
Query: 2079 TGSNLYYECRICYRRYDTEQKLHFHQQVHARARPPSIGDYPPEVGPPPSSLGAPNVEYCTECPESFVNDEEYRKHLLVHM----FKCRYCNIVLESETEYVVHMKTHSDTIPLYVCYICDKQLGSVQQLTRHILSHPDELNFYCKECNKSFTHRTQLNHHMAVHSS-RPYTCKECGKKFAHKTHLRRHEVVHSGLRPHKCRVCNQSFSRKSSLSRHYFIHTTEKPFVCPICEKGFNRKGRLKNHLNIHIRE 2816
TG LY EC+ C + + +L H+++H G+ P E C EC ++F+ + +H +H ++C+ C + + H + H+ P Y C C K QLT+H H +E + CKEC K F+H +QL H +H+ +PY CKECGK F + L RH+ +H+G +P++C+ C ++FSR S L++H IHT EKP+ C C K F R +L H IH E
Sbjct: 274 TGEKLY-ECKECRKVFTQLSQLILHKRIHT-------GEKPYE---------------CKECGKAFICGSQLSQHQKIHNGEKPYECKECGRAFIRGSLLMQHQRIHTGEKP-YKCEECGKAFIRGSQLTQHQRIHTNEKPYECKECGKMFSHGSQLTQHQRIHTGEKPYQCKECGKAFNRGSLLTRHQRIHTGEKPYECKECGKTFSRGSELTQHERIHTGEKPYECKECGKSFIRGSQLTQHQRIHTGE 500 HSP 3 Score: 136.732 bits (343), Expect = 9.365e-33 Identity = 78/258 (30.23%), Postives = 127/258 (49.22%), Query Frame = 3
Query: 2097 YECRICYRRYDTEQKLHFHQQVHARARPPSIGDYPPEVGPPPSSLGAPNVEY------CTECPESFVNDEEYRKHLLVHM----FKCRYCNIVLESETEYVVHMKTHSDTIPLYVCYICDKQLGSVQQLTRHILSHPDELNFYCKECNKSFTHRTQLNHHMAVHSS-RPYTCKECGKKFAHKTHLRRHEVVHSGLRPHKCRVCNQSFSRKSSLSRHYFIHTTEKPFVCPICEKGFNRKGRLKNHLNIHIREGYSQLKD 2837
YEC+ C + + + +L HQ++H +P + + + + C EC ++F+ + +H VH ++C+ C ++ +H + H+ LY C C K + QL H H E + CKEC K+F +QL+ H +H+ +PY CKECG+ F + L +H+ +H+G +P+KC C ++F R S L++H IHT EKP+ C C K F+ +L H IH E Q K+
Sbjct: 167 YECKQCGKAFSRDSQLSLHQRLHTGEKPYACKECGKAFTQSSQLILHHRIHTGEKPYKCEECGKAFIRSSQLTRHQKVHTGEKPYECKECGKAFTQNSQLTLHQRLHTGE-KLYECKECRKVFTQLSQLILHKRIHTGEKPYECKECGKAFICGSQLSQHQKIHNGEKPYECKECGRAFIRGSLLMQHQRIHTGEKPYKCEECGKAFIRGSQLTQHQRIHTNEKPYECKECGKMFSHGSQLTQHQRIHTGEKPYQCKE 423 HSP 4 Score: 131.339 bits (329), Expect = 4.615e-31 Identity = 83/266 (31.20%), Postives = 124/266 (46.62%), Query Frame = 3
Query: 2034 TQPIVGKPPHPLTSPTGSNLYYECRICYRRYDTEQKLHFHQQVHARARPPSIGDYPPEVGPPPSSLGAPNVEYCTECPESFVNDEEYRKHLLVHM----FKCRYCNIVLESETEYVVHMKTHSDTIPLYVCYICDKQLGSVQQLTRHILSHPDELNFYCKECNKSFTHRTQLNHHMAVHSS-RPYTCKECGKKFAHKTHLRRHEVVHSGLRPHKCRVCNQSFSRKSSLSRHYFIHTTEKPFVCPICEKGFNRKGRLKNHLNIHIRE 2816
+Q I+ K H P YEC+ C + + +L HQ++H G+ P E C EC +F+ +H +H +KC C ++ H + H++ P Y C C K QLT+H H E + CKEC K+F + L H +H+ +PY CKECGK F+ + L +HE +H+G +P++C+ C +SF R S L++H IHT EKP+ C C F + L H +H E
Sbjct: 292 SQLILHKRIHTGEKP------YECKECGKAFICGSQLSQHQKIHN-------GEKPYE---------------CKECGRAFIRGSLLMQHQRIHTGEKPYKCEECGKAFIRGSQLTQHQRIHTNEKP-YECKECGKMFSHGSQLTQHQRIHTGEKPYQCKECGKAFNRGSLLTRHQRIHTGEKPYECKECGKTFSRGSELTQHERIHTGEKPYECKECGKSFIRGSQLTQHQRIHTGEKPYECKECRMAFTQSSHLSQHQRLHTGE 528 HSP 5 Score: 127.487 bits (319), Expect = 7.126e-30 Identity = 82/273 (30.04%), Postives = 130/273 (47.62%), Query Frame = 3
Query: 2097 YECRICYRRYDTEQKLHFHQQVHARARPPSIGDYPPEVGPPPSSLGAPNVEYCTECPESFVNDEEYRKHLLVH----MFKCRYCNIVLESETEYVVHMKTHSDTIPLYVC------YICDKQLGSVQQ----------------------LTRHILSHPDELNFYCKECNKSFTHRTQLNHHMAVHSS-RPYTCKECGKKFAHKTHLRRHEVVHSGLRPHKCRVCNQSFSRKSSLSRHYFIHTTEKPFVCPICEKGFNRKGRLKNHLNIHIRE 2816
Y+C C + + +L HQ+VH G+ P E C EC ++F + + H +H +++C+ C V ++ ++H + H+ P Y C +IC QL Q+ L +H H E + C+EC K+F +QL H +H++ +PY CKECGK F+H + L +H+ +H+G +P++C+ C ++F+R S L+RH IHT EKP+ C C K F+R L H IH E
Sbjct: 223 YKCEECGKAFIRSSQLTRHQKVHT-------GEKPYE---------------CKECGKAFTQNSQLTLHQRLHTGEKLYECKECRKVFTQLSQLILHKRIHTGEKP-YECKECGKAFICGSQLSQHQKIHNGEKPYECKECGRAFIRGSLLMQHQRIHTGEKPYKCEECGKAFIRGSQLTQHQRIHTNEKPYECKECGKMFSHGSQLTQHQRIHTGEKPYQCKECGKAFNRGSLLTRHQRIHTGEKPYECKECGKTFSRGSELTQHERIHTGE 472 HSP 6 Score: 125.561 bits (314), Expect = 3.543e-29 Identity = 81/255 (31.76%), Postives = 117/255 (45.88%), Query Frame = 3
Query: 2097 YECRICYRRYDTEQKLHFHQQVHARARPPSIGDYPPEVGPPPSSLGAPNVE----------YCTECPESFVNDEEYRKHLLVHM----FKCRYCNIVLESETEYVVHMKTHSDTIPLYVCYICDKQLGSVQQLTRHILSHPDELNFYCKECNKSFTHRTQLNHHMAVHSS-RPYTCKECGKKFAHKTHLRRHEVVHSGLRPHKCRVCNQSFSRKSSLSRHYFIHTTEKPFVCPICEKGFNRKGRLKNHLNIHIRE 2816
Y+C+ C + + L HQ +H +P + G S ++ C EC ++F + H +H +KC C ++ H K H+ P Y C C K QLT H H E + CKEC K FT +QL H +H+ +PY CKECGK F + L +H+ +H+G +P++C+ C ++F R S L +H IHT EKP+ C C K F R +L H IH E
Sbjct: 139 YKCKECGKAFRRASHLTQHQSIHTGEKPYEC----KQCGKAFSRDSQLSLHQRLHTGEKPYACKECGKAFTQSSQLILHHRIHTGEKPYKCEECGKAFIRSSQLTRHQKVHTGEKP-YECKECGKAFTQNSQLTLHQRLHTGEKLYECKECRKVFTQLSQLILHKRIHTGEKPYECKECGKAFICGSQLSQHQKIHNGEKPYECKECGRAFIRGSLLMQHQRIHTGEKPYKCEECGKAFIRGSQLTQHQRIHTNE 388 HSP 7 Score: 99.3673 bits (246), Expect = 4.651e-21 Identity = 47/123 (38.21%), Postives = 73/123 (59.35%), Query Frame = 3
Query: 2451 LTRHILSHPDELNFYCKECNKSFTHRTQLNHHMAVHSS-RPYTCKECGKKFAHKTHLRRHEVVHSGLRPHKCRVCNQSFSRKSSLSRHYFIHTTEKPFVCPICEKGFNRKGRLKNHLNIHIRE 2816
L++H H E + CKEC K+F + L H ++H+ +PY CK+CGK F+ + L H+ +H+G +P+ C+ C ++F++ S L H+ IHT EKP+ C C K F R +L H +H E
Sbjct: 126 LSQHSRCHSTEKPYKCKECGKAFRRASHLTQHQSIHTGEKPYECKQCGKAFSRDSQLSLHQRLHTGEKPYACKECGKAFTQSSQLILHHRIHTGEKPYKCEECGKAFIRSSQLTRHQKVHTGE 248 HSP 8 Score: 90.5077 bits (223), Expect = 2.742e-18 Identity = 53/134 (39.55%), Postives = 75/134 (55.97%), Query Frame = 3
Query: 2517 FTHRTQLNHHMAVHSS-RPYTCKECGKKFAHKTHLRRHEVVHSGLRPHKCRVCNQSFSRKSSLSRHYFIHTTEKPFVCPICEKGFNRKGRLKNHLNIHIREGYSQLKDYVIERRPITREFIEQMNQVTSDDPVH 2915
F T L+ H HS+ +PY CKECGK F +HL +H+ +H+G +P++C+ C ++FSR S LS H +HT EKP+ C C K F + +L H IH E K Y E + FI + +Q+T VH
Sbjct: 120 FNQHTYLSQHSRCHSTEKPYKCKECGKAFRRASHLTQHQSIHTGEKPYECKQCGKAFSRDSQLSLHQRLHTGEKPYACKECGKAFTQSSQLILHHRIHTGE-----KPYKCE--ECGKAFI-RSSQLTRHQKVH 245 The following BLAST results are available for this feature:
BLAST of TCONS_00022507 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.