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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022563 ID=TCONS_00022563|Name=TCONS_00022563|organism=Clytia hemisphaerica|type=transcript|length=1672bp
TACAGATGTACATGATATAATCCCGAGCGCTATCAGTATAAAAAGTGAAC
AAAGGGTCTGGGTTTGAGTTTGGAAATTTAACTTCATCATAATTAGATCG
CCTTGAATAACCATGTACTTTTATTTTAAGCGGATTCCTGCTACTTCTCA
TTTTGTCAAACCgttaaatatatataaaaatacaatttcattttaatcac
TAACAGAATTCATCAAACCACATAATTCTATTTTCTAGCTGTTTCTTTCT
CATCATTTTGGCATTTTATCAAGatataaatttataaaaattcaatCACT
GTCAGAATTTGTCAACAGTCCAGTCAAAATTGTGTGTGtctattatattt
gaaaaaatatttgcaaTTGTTGAGTTTATTAACAACATCTGGACCATTTC
TTTGAAAAGGCAAAATGGCTGGTTTCTTTGAAGACATTGGGAAAGGATTA
CAACAAGCAGCTGACGAGGCAAATAAAATTACCAGCGGTGTAGTCAAAAC
TGTTGTCAAGGGGACAGAAGATGCAGCAGGGGCAGTATTCCATGAAGCTG
GAAAAGCCTTAAATTTAAGCTATACCAAAGATTTGCATGATACGGAGTTA
CTGAAGCTGTTAGTACAATGTGCAAGTAATTGTTATTCTTTTAACGAAAA
TGACCTCAAAGCTCTTCCCTTGAAGTTAACATATAAGCAGGAGCAAAATG
AAACAAGTGAAAACATCAATAATCTGTTACAGTATGGTGTATACGAAATC
ACAAGTGGAAAACATAAAGGGAAAAGGGTATTAGCATACCGAGGTACTGC
TTCCCTGATGGGAATACTCCAAGATGCTTCTCTCATTAACCCCGCTATGT
CACCCTTTGGTTCCCTCATTCATACAACAAACCAGCATGCTGTCCAGCGG
GCTAATGACCACAAACCCGACTTTATCACAGGTCACAGTCTAGGTGCATT
TATTGCTGAATGTGTATGTGCAGCTACGGGTATTCCTGGGGCGGCATTTA
ACGCTCCTGGACCGTGGGCGGCTAATCCGTTAAATAACTGTGCGGTGGGT
GATAAGTACAGGGGAGTCCCGTTTGAAATACATCTTGTCAACACTGATTT
AGTGTCACACTACGGGAGCGTGGCTGGACCCAATTCATCGCATATCGGAA
CGCCAAAATGGCATGACGTACCAGGGAGAGATGACCCACTAACAAGTCAT
GCGATCAGTACAATGGTCACAATAATCCACAGCCTGTAAGGACTTCACTA
ACACTAAGGCTAGTGACAATAACAGCATAGCCTGTACCAACCCGAACACC
GTGCGGCtagtgattttttgcacattgaTGGACAGATATGTAAAATCTGC
ACAGCACTTTAAGcaaaatgttttaaatatttgaatatttgcaTAAGGAT
ATAATCTATATATTATCTTATGTTATTTTTTCAACTATCAGCAATTTagt
tcatcttttcaatttatttgtgtggggaaatattaaaaaagaagcaaaat
gGAGTCTTTTTGAAAACCCCCAAAGTCGTTGTAAATTCTCCAAAGAATTT
TAACATCATTGATGACAACATCGCCACCTTGATgtcatcattctttcaaa
ataccGAAAATACATCTAGCttttttcactttaatttttttgctcaaatt
ttgtgaaGACATGTATTTTTGA Run BLAST on NCBI protein sequence of TCONS_00022563-protein >TCONS_00022563-protein ID=TCONS_00022563-protein|Name=TCONS_00022563-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
MAGFFEDIGKGLQQAADEANKITSGVVKTVVKGTEDAAGAVFHEAGKALN
LSYTKDLHDTELLKLLVQCASNCYSFNENDLKALPLKLTYKQEQNETSEN
INNLLQYGVYEITSGKHKGKRVLAYRGTASLMGILQDASLINPAMSPFGS
LIHTTNQHAVQRANDHKPDFITGHSLGAFIAECVCAATGIPGAAFNAPGP
WAANPLNNCAVGDKYRGVPFEIHLVNTDLVSHYGSVAGPNSSHIGTPKWH
DVPGRDDPLTSHAISTMVTIIHSL Run BLAST on NCBI transcript from alignment at sc0000427:101681..103691+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022563 ID=TCONS_00022563|Name=TCONS_00022563|organism=Clytia hemisphaerica|type=transcript|length=2011bp|location=Sequence derived from alignment at sc0000427:101681..103691+ (Clytia hemisphaerica)
TACAGATGTACATGATATAATCCCGAGCGCTATCAGTATAAAAAGTGAAC
AAAGGGTCTGGGTTTGAGTTTGGAAATTTAACTTCATCATAATTAGATCG
CCTTGAATAACCATGTACTTTTATTTTAAGCGGATTCCTGCTACTTCTCA
TTTTGTCAAACCgttaaatatatataaaaatacaatttcattttaatcac
TAACAGAATTCATCAAACCACATAATTCTATTTTCTAGCTGTTTCTTTCT
CATCATTTTGGCATTTTATCAAGatataaatttataaaaattcaatCACT
GTCAGAATTTGTCAACAGTCCAGTCAAAATTGTGTGTGtctattatattt
gaaaaaatatttgcaaTTGTTGAGTTTATTAACAACATCTGGACCATTTC
TTTGAAAAGGTATGATCATTGCATTTAAGTTCGATTATATGAATAGTTTA
AAAAGGAGACTAGCCCTATGGGCACGCAACGTCTTATgtacattagacgt
ccaaaagacgtttgtgcCCATTGGGAGGTACTACAACCATGTTCgaaata
ttgagaattttgtgtattttaacttttccgaaatttcaagttcgggcgag
aattgtaATTAATTAGTACTTCCActttattgggggggggggatttaTTT
CGGGGTTCAGTAGATTCAGGCTCTATTCCCATtaatttgaacaattttga
gcGTTTGAAGTAGTAGTAATCAATAATCTTATACAAATATCATTTTAGGC
AAAATGGCTGGTTTCTTTGAAGACATTGGGAAAGGATTACAACAAGCAGC
TGACGAGGCAAATAAAATTACCAGCGGTGTAGTCAAAACTGTTGTCAAGG
GGACAGAAGATGCAGCAGGGGCAGTATTCCATGAAGCTGGAAAAGCCTTA
AATTTAAGCTATACCAAAGATTTGCATGATACGGAGTTACTGAAGCTGTT
AGTACAATGTGCAAGTAATTGTTATTCTTTTAACGAAAATGACCTCAAAG
CTCTTCCCTTGAAGTTAACATATAAGCAGGAGCAAAATGAAACAAGTGAA
AACATCAATAATCTGTTACAGTATGGTGTATACGAAATCACAAGTGGAAA
ACATAAAGGGAAAAGGGTATTAGCATACCGAGGTACTGCTTCCCTGATGG
GAATACTCCAAGATGCTTCTCTCATTAACCCCGCTATGTCACCCTTTGGT
TCCCTCATTCATACAACAAACCAGCATGCTGTCCAGCGGGCTAATGACCA
CAAACCCGACTTTATCACAGGTCACAGTCTAGGTGCATTTATTGCTGAAT
GTGTATGTGCAGCTACGGGTATTCCTGGGGCGGCATTTAACGCTCCTGGA
CCGTGGGCGGCTAATCCGTTAAATAACTGTGCGGTGGGTGATAAGTACAG
GGGAGTCCCGTTTGAAATACATCTTGTCAACACTGATTTAGTGTCACACT
ACGGGAGCGTGGCTGGACCCAATTCATCGCATATCGGAACGCCAAAATGG
CATGACGTACCAGGGAGAGATGACCCACTAACAAGTCATGCGATCAGTAC
AATGGTCACAATAATCCACAGCCTGTAAGGACTTCACTAACACTAAGGCT
AGTGACAATAACAGCATAGCCTGTACCAACCCGAACACCGTGCGGCtagt
gattttttgcacattgaTGGACAGATATGTAAAATCTGCACAGCACTTTA
AGcaaaatgttttaaatatttgaatatttgcaTAAGGATATAATCTATAT
ATTATCTTATGTTATTTTTTCAACTATCAGCAATTTagttcatcttttca
atttatttgtgtggggaaatattaaaaaagaagcaaaatgGAGTCTTTTT
GAAAACCCCCAAAGTCGTTGTAAATTCTCCAAAGAATTTTAACATCATTG
ATGACAACATCGCCACCTTGATgtcatcattctttcaaaataccGAAAAT
ACATCTAGCttttttcactttaatttttttgctcaaattttgtgaaGACA
TGTATTTTTGA Coding sequence (CDS) from alignment at sc0000427:101681..103691+ >TCONS_00022563 ID=TCONS_00022563|Name=TCONS_00022563|organism=Clytia hemisphaerica|type=CDS|length=825bp|location=Sequence derived from alignment at sc0000427:101681..103691+ (Clytia hemisphaerica)
ATGGCTGGTTTCTTTGAAGACATTGGGAAAGGATTACAACAAGCAGCTGA
CGAGGCAAATAAAATTACCAGCGGTGTAGTCAAAACTGTTGTCAAGGGGA
CAGAAGATGCAGCAGGGGCAGTATTCCATGAAGCTGGAAAAGCCTTAAAT
TTAAGCTATACCAAAGATTTGCATGATACGGAGTTACTGAAGCTGTTAGT
ACAATGTGCAAGTAATTGTTATTCTTTTAACGAAAATGACCTCAAAGCTC
TTCCCTTGAAGTTAACATATAAGCAGGAGCAAAATGAAACAAGTGAAAAC
ATCAATAATCTGTTACAGTATGGTGTATACGAAATCACAAGTGGAAAACA
TAAAGGGAAAAGGGTATTAGCATACCGAGGTACTGCTTCCCTGATGGGAA
TACTCCAAGATGCTTCTCTCATTAACCCCGCTATGTCACCCTTTGGTTCC
CTCATTCATACAACAAACCAGCATGCTGTCCAGCGGGCTAATGACCACAA
ACCCGACTTTATCACAGGTCACAGTCTAGGTGCATTTATTGCTGAATGTG
TATGTGCAGCTACGGGTATTCCTGGGGCGGCATTTAACGCTCCTGGACCG
TGGGCGGCTAATCCGTTAAATAACTGTGCGGTGGGTGATAAGTACAGGGG
AGTCCCGTTTGAAATACATCTTGTCAACACTGATTTAGTGTCACACTACG
GGAGCGTGGCTGGACCCAATTCATCGCATATCGGAACGCCAAAATGGCAT
GACGTACCAGGGAGAGATGACCCACTAACAAGTCATGCGATCAGTACAAT
GGTCACAATAATCCACAGCCTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022563-exon-sc0000427-1491911889:101681..102089 | TCONS_00022563-exon-sc0000427-1491911889:101681..102089 | Clytia hemisphaerica | exon |
| TCONS_00022563-exon-sc0000427-1510915933:101681..102089 | TCONS_00022563-exon-sc0000427-1510915933:101681..102089 | Clytia hemisphaerica | exon |
| TCONS_00022563-exon-sc0000427-1575043694:101681..102089 | TCONS_00022563-exon-sc0000427-1575043694:101681..102089 | Clytia hemisphaerica | exon |
| TCONS_00022563-exon-sc0000427-1491911889:102429..103691 | TCONS_00022563-exon-sc0000427-1491911889:102429..103691 | Clytia hemisphaerica | exon |
| TCONS_00022563-exon-sc0000427-1510915933:102429..103691 | TCONS_00022563-exon-sc0000427-1510915933:102429..103691 | Clytia hemisphaerica | exon |
| TCONS_00022563-exon-sc0000427-1575043694:102429..103691 | TCONS_00022563-exon-sc0000427-1575043694:102429..103691 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000427 | supercontig | sc0000427:101681..103691 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029058 | AB_hydrolase |
Blast
The following BLAST results are available for this feature:
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