TCONS_00022575 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022575
Unique NameTCONS_00022575
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1359

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022575 ID=TCONS_00022575|Name=TCONS_00022575|organism=Clytia hemisphaerica|type=transcript|length=1359bp
TTTTAAGATgtcatgaaaatgaaattaaaaaatagtAGAATGGACACAAA
TCATACCTGTGGTATATTACTGCTGTTGTTTTTCTTGGCATGTTTCAACA
TAGATCAGGGCGTGAAAGCTGTAAAATGCAATGGTGCAACTTGTCCCATT
TACAGTTATTGTGACATGCAAACAAAGAATTGTACGTGCATCGACGTGGT
GACGCCCCAACGCCCGCAGTGTGGTAGTGACGGACAGACGTATTCCAGTT
TGCAAGCGTTACAGAAACATGCTTGTGAAATGAATAAGACCATCACGCCA
AGTAAAGAAGGACCTTGTTACAATTGCACTGACACAAGATGTCATCCATA
CACGACCTGTGACGCTAAAACAAATGTCTGCGTCTGCAAACCAGTACTGG
AATTATATGCCCCTGTCTGTGGGAGTGATGGGCAGTCCTTGCAAACTTAT
GATAGTATATACCACCTCAATCACACAGCTTGTATGGAAGAACGAAATAT
TGTGAAATTATACGATGGATTCTGTAAAGggcCTGGTACATGCGGTCATT
CATCATGTCCGATTTATAGTGAGTGTGACCGCGTCACGAATAAATGTGAA
TGTCGAAAGACGGTGAATTTGACCATAGCTGAGGTTTGTGGGTCAGATAA
TGTGACGTACCAGAATGAAGATGCACTGAAAGGCACTGCATgtcatcaaa
atgaaacaataacagTCCAACACCGTGGTGCATGCTCTGTAGTTTTCACA
AATTGTGCCGGTGAAACGTGTTTACAGTACCAACAATGTGACATCACAAC
CGACACGTGCAAGTGTGTCCAAGGGAATAACGTGACGGCAGAGGTGTGCG
GAGATGACGGCGTGACGTATAAGAATGAAGACCATTTGATATACGCTATG
TGTAAAGGCGAAACTCACGGTACCGGGAAGAAACACGACGGGAAGTGTAA
ACAAGGTGGCGATAGATTGATGATATATATCTTGGTAGGCGTTGGGGCGT
TCGTGTTGATCATGGTGATTGTGCTGACCATCATTTGTTGTGTGCGAAGG
CGGAGAGATAGGGCGCCATCAAAATCAACATACAGCGCAAATGATTACGA
AGTCCCACTTATGTAGCTTGGTAGAATTTTAGTATATATTCCTAATTTTA
GAAtttcttaatttgttttgaCACAGTTTGTGTACAACCCTAGCTTTACA
ACCCTAGCTTACAACACATAGCTTTTTGTCGtcttgattttgtttgtttg
taacGTGTATTAAACTAACATGTAGCATCTAACAATGTGTTGTTGTCTTT
TTACGTTACAATGGGTAGtctttgttttataagaacgtcctcaacttttc
agttttaag
Run BLAST on NCBI

transcript from alignment at sc0000427:108121..119763-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022575 ID=TCONS_00022575|Name=TCONS_00022575|organism=Clytia hemisphaerica|type=transcript|length=11643bp|location=Sequence derived from alignment at sc0000427:108121..119763- (Clytia hemisphaerica)
TTTTAAGATGTCATGAAAATGAAATTAAAAAATAGTAGAATGGACACAAA
TCATACCTGTGGTATATTACTGCTGTTGTTTTTCTTGGCATGTTTCAACA
TAGATCAGGGTAAGTAACATTTCAAATATACACATTATTACCTTTTTTGA
GTCCCTTTTCGACTCAATCTAGCTTAGTTTCTGAACTTCAAGCGGGAATC
CCTTCGCGGGGAGTTTCCCGCTCTAGCCTAGTTTCGCAGCATCGGGCAAT
CAAGCCTACTCACTGCTAGACTAGGCTCCTATTTTTTTATAAGTACTCTT
TAACATTTAAAAAGAAAAATAGTATTATATAATATTTTTAACTGTAAATA
TCAAAAAGACGCTTTGGATTTATATACCATTTTTATTGGTGATAAAAGAG
ATGTCATTAAGAAAAAATCTTTTCTCTAAGAATGATTCTATAAAGATTTT
CGAAAATGAAGCTCAATAGCCCTGTTCACGGTCGAAAGGAACTATGGGTA
ATCAGGGCTACTGCTCTCTCTCATGACAACTTTCTGTTGGTCTAAATTAT
TTTGTCTTCTTTCCCGCTTTTTCTCATCTATATCTCATCCCTTGCATTGA
AATATGACATAACCTATTTGGATTTTTTCACATAGCTTGCTGGGTTCGAT
ATTTATCTTGGTCGCAAAAAGATCTTTTCCCTTTGTACTCCGACAGCATA
ACATTTTGCGAAAGTACGTGGATTTTCATCGAAATTTCCCACCATCACTG
GAGAAAAATATATATTTTCCGAGGCTAGAAACAAATTTAAATTTAATTTT
AAAAAAAATTTTCTGGAATGGCCCATTCCTTGATAAATTATATAAATTTC
ATTTCATTACATAGGCGTGAAAGCTGTAAAATGCAATGGTGCAACTTGTC
CCATTTACAGTTATTGTGACATGCAAACAAAGAATTGTACGTGCATCGAC
GTGGTGACGCCCCAACGCCCGCAGTGTGGTAGTGACGGACAGACGTATTC
CAGTTTGCAAGCGTTACAGAAACATGCTTGTGAAATGAATAAGACCATCA
CGCCAAGTAAAGAAGGACCTTGTTACAGTAAGTATGTGGTTTTCTACCGA
ATTCGGGCCCTGGTTAAAAGAGGGTTGAGTTTAGTAAATTAATAACCCTT
TAACTGCCGATCCTTTTTTTCCACACCTCGACCTAATTGTCGAGGCATAT
GCCGACATGGGCAAAAGGTAGCGATTTTGACTTCATTTTCTGAGTAAGAT
AGGAAGTATCAGCTAAAGGACTATAATTTTGAGTTGAACATTGTAGAATA
GTTATTTTTCAACATCAAAAAGTTTGTAACTATTCATTTTTTTACATTTC
AAACCATTTAATGCAAAATCTTTGTAGAAAATGATACGATAAAGTTCTAG
CAAATATGTCAGCGAGATTTCGCATGTCGGAATATGGCGACATCGGCAAA
GAAATCGAAAATGCTCAATGTATATACCGACATTGGCACGGAAAGGGATA
ATTTACCATCTTGAATTTACATCGATTTAAAGTGAACGCTTCCATGTGAC
AGAATATGCCCTACCCAAGGCAGCTATCTTAAAATCTATCTTCAAAGGAC
TTGCTAGACTCTAACATTCTTCCATTTTTTCTGAATTCGGGCAGCCCCAG
TTGAAGGAGGTTTGGGTTCAAGCTTACCTCTTTATCATCTAAAATTTACA
GTTTGAACTGTTTTCTACCTATAATATCAAAATAGTGTAAAAATACAAAA
ACATTTTAACCCTTGCCTTGAAAAAAATTATTTTAAAAGATTCATTTTTG
TGTTTCATCGATTTTAAATTGATTTTGAGCGAAATCATCATTATAACAGA
ATATGTCCTACCCAAGACAACTATCTTTAAACCTTAAAACCTTTCTTAAA
AAAGAAAGCGCCAGACTCTGCCATTCTTTTACTCGAGGCACTTACAGGTG
AAGGGACCTCAGAATGCTAGGTGTTTTTTGAGATCCCATCAAAGTTGATA
AATTTAGCCAGACACTTGGTTTTCACTTTAAAGTGTTTGGAAAATATACC
TGCTTGAATGCCAAAAAGGTTGAAAACTTTTTCGATACAGTTTTCATACA
TTTTGAATTAATGTTCTAATATATACTTTTTTCTTTAGGGACCTCAAAAC
GCTAGGTCACATATTAGTCAATAATGTTGCCAATTTTGCTTAGATAATGA
CAATTTTTTGCATAACACCTTTTTTTTCAATGTTGAGTATATTTTAAATG
TTTGGTTCTTTTATGCCTAAAATTTTCTCTATTTCACCACAAAATGCTAG
GTCAAGGAACCTCAGAATGCTAGGTAAATAAAACTAAATATACATTTTTT
TATAAGAATATCTTTTTTTCAATTTCTTTTTCACATAATGACATGGATAT
TCTTGTCACAATTCAACTATCAATTTCCCTCTTTCAATTTATTTCAGCCT
TTTTAATAGGCTGTTTAATTCAGGTGTTTATGAATTATTTCTTCTATATT
TTGTTTTATGGGTTATGTTTGCCCAACTTTGGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAC
TGATTTTTTTCAAGAAAACTACCTAGCATTCTGCAGTCCCTTTTTAAATG
TATTGTTAAAATTTCAAAAATGTTCATATTCTTTATTCATTTATAGTTCT
TTATTCATTATATAGTTATTTAGAGTTATTTGTTACAATTTCAAAGGAGA
TTCAAGAGAAGATTTTGCGTTTTTGTTTTGTACCTCAAAACGCTAGGTTT
GGCACCTCAAAACGCTAGGTGGTTTTGGAGTCTATTTAAATGAAATTGTA
ATAACTTTGAGAAACCATCTTTTTTACCATGTTTCTAGAGTCCTAAAAGA
ACATTTTTCATAACGCTTTACAAACTTATTTTTAGAAGGAGTTGCAGAAT
TCAAAATTAATTCCAAAAATTTTGTTGAAGTCTTTGAAACTTTTTTGACT
TTTTATTCATTTAGGATGCTCCTTTAGGGTAGCAAGTAATACAATTTGTT
TTTACTATGTAATATTATACCCTTTATTCATATTGTTTGTCATTTTTAGT
TTAAATAGAAAAGTTTGAGTTCCATTCAACTTAATTCAAAACCTGACATC
CTGAGGTCCCACTGCATTTTGAGGTCCCTTTACCTGTACAGTAGATCTGA
ACTTTAAGTAAGAGAGGGCATGCTTCGTCGAGGAAAAATTTCATGCTAAT
GATAGAGGGGGTGCCCGGTGCACGAACGGCAAACTTTTTTTTCACTTTTT
TCGCTTACTTTTAGTTTTTACATAAATCCTCTTTGACCATCTTGTAGACA
AGGTTGAAGTCCTTCTTTCAATTTGTTATCACCTTTTTTGAAAGTGTCTT
CTTGGAATAATAAGCCGTAGAAGTGAGCGTTATTCGGACCCAGTCCACGA
ACGAGGAACCAGTCTGCGAACGATCTTTTGAAAGAAAAAATTAGAGCTCC
GCTCGCAGGTAAACTTGAATATATCGGCTGAAGTAGTACTCCACTCTGTT
ATCTTTGAAAACAAACGGCTTTTTGCTTTTTCTACCAATCATATATTTGA
ATTTGAAAACTTTACTCATTTTGGGGATTATTAGAACTTGTAACCTTATC
CTTTTGGCTATAAAAAATTGTTCTCACTCCTAATTCCCGGCCCCCTCTTA
AAAAACCTTATCTACTTTCGAAATACACATTCGGTTGTGTCCCACGAAAG
AAGCTGGATTACAATGTTTCAAAAACTTTCTGTTCACATCCTTTGACGAA
AAGTCTCAAAATTCTTTCTGCATCCCACGAAAGATGTTATAGAACCTATG
GGTTGTCCCCTTGTTTTTTCTACGACGCAGACAGTAAGCTTCTATTTTGT
CTACATCCTTACTGACTGAGAACGTCGGTAAATCAACAATTTTATTGTCC
TCAATTTTGTGGGTCAGAACTGCGGGTTTTTCCAAATCGCTTCAGAAACT
CCGTTGTCCTCAAAAGTGAAAAAACATAAACTCGCTAATGATTCTCATTT
TATTTTGTTCAAGATTGCACTGACACAAGATGTCATCCATACACGACCTG
TGACGCTAAAACAAATGTCTGCGTCTGCAAACCAGTACTGGAATTATATG
CCCCTGTCTGTGGGAGTGATGGGCAGTCCTTGCAAACTTATGATAGTATA
TACCACCTCAATCACACAGCTTGTATGGAAGAACGAAATATTGTGAAATT
ATACGATGGATTCTGTAAAGGTATGCACTCGTGTCTTTGCTTAAACTGTT
AAAGGTTTTATTTTTACATAAGTGATTCCGTTTCATATCAGACACATATT
TCATATCAGGACAGTGTCTTACTATATAAGATATGATATAAGATATATAA
TCTATGCTGATATAATCAAAAAATATGTTTTTCTTTTTCTCTTTTTGACC
AATCTTGCTCCACATCCGTGTCAATCCATTGTGAAAAAGCTTGTGAATTA
AAATCGATGAGTAAGCAAACGATATCAATCTTATTTAAAAACAAAACCTT
TAAAGGAATCCGATTGCTTTTGAGATAGCCACCATTAAAAGGCTCATGTG
TCAATCGCTGAGCTTTATATAAACACTAGAAGCATTCTCTCAATCACAAT
TCAAATGGCGATGTTGAGGAGTTAAAAGTCAAATATATTCGCAAATTTTA
TGTGTTTTATCAAACCCTAACCGTTTTATACCCCGACAAGGAGGTTTAGC
GACCCGAAACTGCCACAAATCCTCAAATCAGACCCCATAACATTCATATT
TAAGCGCTTAGCAACGCTAATGTATCAACTAAAAAAAACATTAATATATT
TTATTTTTTTAGGGCCTGGTACATGCGGTCATTCATCATGTCCGATTTAT
AGTGAGTGTGACCGCGTCACGAATAAATGTGAATGTCGAAAGACGGTGAA
TTTGACCATAGCTGAGGTTTGTGGGTCAGATAATGTGACGTACCAGAATG
AAGATGCACTGAAAGGCACTGCATGTCATCAAAATGAAACAATAACAGTC
CAACACCGTGGTGCATGCTCTGTAGGTGAGTCCTTTTACGTTGCATTTTT
CAGCGTTGTATAACGTTAGATATATCTTATATCGATCTTATTCATGATAT
GTACCACTGGAGGGTCTTCTGAGAACTTTTAAAAATTTTCACCCAATACG
TCACTTAAACAATAATAGAAAAAGTGACGTATTGGGTGGAACAAAAACAG
AAAATTTGCATAATTCCGTGAAGTCGTTGCAGTGGTGTATATCGATCTTA
CTTCATGTACTACGACTGTACCATTTTCAAGTCTGTTGGTATGACCCAGT
CAGGGGTTGAACCCATAATTTTGTGCACCATAGCCAAATGCAATACCTCT
GCACTGCGTACCGAGTCTGACCAAAATAGTAGAGACACTTGTTTTACACA
GAAAAAGTTAATATCGAACACGTGTTTTTTTTATAAAAACAAACCATATA
AGTTAAGGCTAAAATATTTAGAACAAGTTAAGAACATTTCAAGGCTTTAT
GGACTCTAATACACCCAACGTCTTAGGGAAATGGACAACAATACTCACAG
AATGGTAAAATCAAGAACATTTTTAGGCGTAAAACTCAGAAAAGATGAGA
ACATCTGAAGGCTCGTAAAATTTAAGATGCTCTTATAAAAAACGTGTAAC
ATTATTTTATATCTTTCAGTTTTCACAAATTGTGCCGGTGAAACGTGTTT
ACAGTACCAACAATGTGACATCACAACCGACACGTGCAAGTGTGTCCAAG
GGAATAACGTGACGGCAGAGGTGTGCGGAGATGACGGCGTGACGTATAAG
AATGAAGACCATTTGATATACGCTATGTGTAAAGGCGAAACTCACGGTAC
CGGGAAGAAACACGACGGGAAGTGTAAACAAGGTATTAATTGTTATAATT
TATGGCACCGTTTACACGTTACGGTTTCGAATTATGCCGAAACAAAATTA
AACTATCGAATTTTAGTAACAACCTAAATCATGATATAATAAGTATAACC
GTAAAATTTATCAAAGATACCGGTCGATTCGAGGGTCCGTTGTTTTGATT
GTTCACAATGCTCATTTAGTTTGTTTTTTGTTTAATTTTGCCTAAGTTTT
CTATCTATTGTTCTTTTTTCTTTCTCGCTTTTCTTTTTATAAGGTTCCTC
TCTCCTGGCGGTATAATCTAGCGGTTTTTTGCGGGAGGGCTGGAACCTTT
TAGTGTTTGTATTCTATGTTCGTGTCATTACTTANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGTATTGTTGGAAAAAGACCGACATTCCTAACGGGTAAAACG
GCTCGTAGAGAACCGTAATATATATAAACGTAGTCTTAAAAAGGGCCGTT
TTACGTTGAATACAAGGCCAGCATATTATATATTTTTATTGGATTCCTGG
CCAAGTCATGTACCAAGTTTCTAGTCTACAATCGGCGCCGAAATATTTGG
TAAAAAAGGGGAATTCCCTCAAAACTTTAAAACCGCAAGTGATTTTTAAG
TGCTTTGAAGTACAGTTCGGAAGTACAGTTTTAACTCTGAGTTTTAACAT
TAAACTTAAGACTTAGGGCCTTAGGATCTCAGGATCTAAAAGCTCAAAAA
TGTTCCAATAAGGCAGAGAATATAGCCTGGAAGCCACTTAACCCCTCCTA
AATCGAAAAATCCGATTAAGCAAAGTGGAAATACTGAAACTGCAATTCGC
GAAAATTTGACCTTTAAATTCTGAAAAACGTTAAATTCCCCAAAATTGTC
AATATATTTCGGTGCTGATTGTAGTTCAATCAATTCTTATATTCTTTTTT
CTCGAATGGACAAGTGGCATAGATAGAATGTAAACATAAGTTAGTTCAAA
CAGAACAAAATGGACTTTCCCAAATTTGAAAAAGGACAACGTAGTGGCAA
ACAATGTTTACTCTTCTCATAAACTCTTTTATTTGAACAACATCATTTAT
AGCATTTATTGAACGATATGGGCTTTTCATTATGAAAGATAAGTCTCTTT
ATAAGAAACGCAGCCAAAAGAACATCCTCCGAAATTGAATCTTGATTGCA
TTTTTTTGTGCCATTTTATAAGCTAATTTTTTAAAAGATTCCTTTTGGAG
ACTTGTCACTCGGTGATTGGTTAAATTTGTGAAAATGTCAAATGCTTCTA
TACTGCCATAATTTCTAGCGCAAACTTAATGATTCTTATAAAACATGTGA
TAGTCTTCTAAACGACAATCTTTTTTGGGTCAATATACTTTTGTTAGAGC
GATTAGACTAGTCAACCCAATGTTTTCTTTTAAGTCATAAAAGCAAAACA
AAAAAACAAAACTAGGTTGGAAATAAAACTGATTGCACCCAGTACATTCT
ATCTAATTTGGATGATTTGTAAAGTTGTATTTATCTTGGAAAATTAAGAG
TTGTCTTACAGTATTTGTTTTCTGGGAAAACTAAACTGACTTCCAGGGAC
TTGATTCACATATGTAAACTGTTGATATATTGCTTTGTAACCATGCAGGA
TAATCAAAAGAACTTTGTCATTGCACCTCTCTCTCCATTAAAAAAGTACC
TCTTTGTGCTGTAGAATGTTCAAAAACAAGTGCAGTTTCGAAAGCATTCA
GCTGGTACACAAAGCTCTTACAACGTTCGTTTGACGTTCGTCATGGGTGT
TAGATAAACGTTGACTTTGTCTGCCGGCAGGAATTATAAGTACTGACAAT
GCTTCAATTTTCCTATGAATATTGTGTAGGGTAATGTTGTTTTTTGGTTT
TAAAAACCTTATGCATTCAGATATATTGTATAATTTCTAACACATTGAAA
CAGGTGGCGATAGATTGATGATATATATCTTGGTAGGCGTTGGGGCGTTC
GTGTTGATCATGGTGATTGTGCTGACCATCATTTGTTGTGTGCGAAGGCG
GAGAGATGTAAGTGTCATCCATTATCAGGGCCAATGCTATGGGGGGGGGG
GGGCAAGAGGCCTCACTGTCTTACTTTTTTCCATTTTTTCAATAAAAAGT
GATTTTAAAATTACACGATTCTTACTTTCAATAGCTTCTTTTCGCAACAA
AAACTTTTCTGAAATAGGGCCATTTTGAGGCGCATTAGGTTATCAAAATC
GATATTTCCACCTGTTGGTGTAAACCATGAGTGTACCTCCTTAGTCGCTA
TATTTTTTACCATTCCATTTTCCAGATCACGACGTGAGCCTTAAATAGTT
AACTTATTTATTTTGATCTCCTTGGTAACAAAGCTTGGGTCACTTTAGTC
TATAGTCTCAAAATTGATGGAAAGAGAGCTTGCTACGGCTTTCCAAATTT
AATCCCTCCAGAAAGTTAAACTTATTTTTGCTGAGCCTTGACATATCCTC
ACTCAGGGTTCAGACAGACCCTGGAAAACCTGGAAATATGATAAATTTTC
AGAAAAATCAGGGAAACTCAGGGAAACCCAGGGAAAATTTTTTTCCCAGT
CTGCTCAGGGAAACTCAGGGAATTTTATTTTTTGAAGAATGAATGGAAAA
AAACAGATTTAAAAGATTTTTTAGTTTTAAAGTGTTTATTCATATGCAGT
ATTTGTAGCTTATAATTTTTTACCTTAGGTTTACCATTTGATTTGTGTGC
CTTTTGTTTAAAGATACATCTCTTTTGACTCTGCTTAGTTTTTATGGTTT
GCTTGATACTCAGGGANNNNNNNNNNNNNNNNNNNNNNNNNGAAAAATAG
CTAAAATGAGGAATTTCTCAGGGAAAAAACCTTTGAAAATTGATTAAAAT
TCAGGGAAACTCAGGGAATTTTATTTTCGAAGGTCTGTCTGAACCCTGTC
ACTTAGTGAACGTTTATTTGGGAAGGCTCTCTCTCTCTTGGATGATATTG
CACAAATACTCCCTTTATATATTTGTAGATACCAAGACCCTTGTTATTAG
TTAGCAGTACATGTTATTTGTTTTGTGTTAAAGATTACTGACATAGAATT
TAGAGTCCCTTTATGTGCCTCTCACACTTTCTGTGCTAGACACAGCACAT
TCCAGCTCAGTTACTCTTCAATGTTTATTTCTTTTTATAGAAGAGGGCGC
CATCAAAATCAACATACAGCGCAAATGATTACGAAGTCCCACTTATGTAG
CTTGGTAGAATTTTAGTATATATTCCTAATTTTAGAATTTCTTAATTTGT
TTTGACACAGTTTGTGTACAACCCTAGCTTTACAACCCTAGCTTACAACA
CATAGCTTTTTGTCGTCTTGATTTTGTTTGTTTGTAACGTGTATTAAACT
AACATGTAGCATCTAACAATGTGTTGTTGTCTTTTTACGTTACAATGGGT
AGTCTTTGTTTTATAAGAACGTCCTCAACTTTTCAGTTTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012661XLOC_012661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022575-exon-sc0000427-1575043694:119655..119763TCONS_00022575-exon-sc0000427-1575043694:119655..119763Clytia hemisphaericaexon
TCONS_00022575-exon-sc0000427-1575043694:118687..118899TCONS_00022575-exon-sc0000427-1575043694:118687..118899Clytia hemisphaericaexon
TCONS_00022575-exon-sc0000427-1575043694:113344..113550TCONS_00022575-exon-sc0000427-1575043694:113344..113550Clytia hemisphaericaexon
TCONS_00022575-exon-sc0000427-1575043694:112539..112751TCONS_00022575-exon-sc0000427-1575043694:112539..112751Clytia hemisphaericaexon
TCONS_00022575-exon-sc0000427-1575043694:111682..111894TCONS_00022575-exon-sc0000427-1575043694:111682..111894Clytia hemisphaericaexon
TCONS_00022575-exon-sc0000427-1575043694:109557..109660TCONS_00022575-exon-sc0000427-1575043694:109557..109660Clytia hemisphaericaexon
TCONS_00022575-exon-sc0000427-1575043694:108121..108420TCONS_00022575-exon-sc0000427-1575043694:108121..108420Clytia hemisphaericaexon
TCONS_00022575-exon-sc0000427-1510915933:119655..119763TCONS_00022575-exon-sc0000427-1510915933:119655..119763Clytia hemisphaericaexon
TCONS_00022575-exon-sc0000427-1510915933:118687..118899TCONS_00022575-exon-sc0000427-1510915933:118687..118899Clytia hemisphaericaexon
TCONS_00022575-exon-sc0000427-1510915933:113344..113550TCONS_00022575-exon-sc0000427-1510915933:113344..113550Clytia hemisphaericaexon
TCONS_00022575-exon-sc0000427-1510915933:112539..112751TCONS_00022575-exon-sc0000427-1510915933:112539..112751Clytia hemisphaericaexon
TCONS_00022575-exon-sc0000427-1510915933:111682..111894TCONS_00022575-exon-sc0000427-1510915933:111682..111894Clytia hemisphaericaexon
TCONS_00022575-exon-sc0000427-1510915933:109557..109660TCONS_00022575-exon-sc0000427-1510915933:109557..109660Clytia hemisphaericaexon
TCONS_00022575-exon-sc0000427-1510915933:108121..108420TCONS_00022575-exon-sc0000427-1510915933:108121..108420Clytia hemisphaericaexon
TCONS_00022575-exon-sc0000427-1491911889:119655..119763TCONS_00022575-exon-sc0000427-1491911889:119655..119763Clytia hemisphaericaexon
TCONS_00022575-exon-sc0000427-1491911889:118687..118899TCONS_00022575-exon-sc0000427-1491911889:118687..118899Clytia hemisphaericaexon
TCONS_00022575-exon-sc0000427-1491911889:113344..113550TCONS_00022575-exon-sc0000427-1491911889:113344..113550Clytia hemisphaericaexon
TCONS_00022575-exon-sc0000427-1491911889:112539..112751TCONS_00022575-exon-sc0000427-1491911889:112539..112751Clytia hemisphaericaexon
TCONS_00022575-exon-sc0000427-1491911889:111682..111894TCONS_00022575-exon-sc0000427-1491911889:111682..111894Clytia hemisphaericaexon
TCONS_00022575-exon-sc0000427-1491911889:109557..109660TCONS_00022575-exon-sc0000427-1491911889:109557..109660Clytia hemisphaericaexon
TCONS_00022575-exon-sc0000427-1491911889:108121..108420TCONS_00022575-exon-sc0000427-1491911889:108121..108420Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000427supercontigsc0000427:108121..119763 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.00549565	0.00403359	2.94563	1.05628	0.906565	3.13823	0.862926	1.526	0.606299	0	0.588904	1.27329	0	0	1.51069	1.25544	0	0	2.35036	2.26685	0.981507	1.11204	0	0.563271	0	0	0.695296	0.728789
Blast
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BLAST of TCONS_00022575 vs. Swiss-Prot (Human)
Match: AGRIN (Agrin OS=Homo sapiens GN=AGRN PE=1 SV=5)

HSP 1 Score: 97.0561 bits (240), Expect = 3.787e-21
Identity = 89/289 (30.80%), Postives = 122/289 (42.21%), Query Frame = 1 
Query:  127 CNGATCPIYSYCDMQTKN--CTCIDVVTP-QRPQCGSDGQTYSSLQALQKHACEMNKTITPSKEGPCYNCTDTRCHPYTTCDAKTNVCVC-KPVLELYAPVCGSDGQSLQTYDSIYHLNHTACMEERNIVKLYDGFCKGPGTCGHSSCPIYSECDRVTNKCECRKTVNLTIAEVCGSDNVTYQNEDALKGTACHQNETITVQHRGACSVVFT-----------NCAGETCLQYQQ------------CDITTDTCKCVQGNNVTAEVCGDDGVTYKNEDHLIYAMCKGE 912
            C G  C   + C ++     C C+   +    P CGSDG TY S   L+  AC + + I  +++GPC  C   +C     C+A+T  CVC    + L  PVCGSDG    TY S   L+  AC  + ++     G C+   TCG + C   + C     +C C +  +     VCGSD VTY +   L+  AC Q   I     G C                +C  E C Q               CD    +C+ V G    + VCG DGVTY  E  L  A C+ +
Sbjct:  468 CLGVQCAFGATCAVKNGQAACECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARKGPCDRC--GQCRFGALCEAETGRCVCPSECVALAQPVCGSDG---HTYPSECMLHVHACTHQISLHVASAGPCE---TCGDAVCAFGAVCS--AGQCVCPRCEHPPPGPVCGSDGVTYGSACELREAACLQQTQIEEARAGPCEQAECGSGGSGSGEDGDCEQELCRQRGGIWDEDSEDGPCVCDF---SCQSVPG----SPVCGSDGVTYSTECELKKARCESQ 739

HSP 2 Score: 80.8777 bits (198), Expect = 5.408e-16
Identity = 71/218 (32.57%), Postives = 91/218 (41.74%), Query Frame = 1 
Query:  142 CPIYSYCDMQTKNCTC-IDVVTPQRPQCGSDGQTYSSLQALQKHACEMNKTITPSKEGPCYNCTDTRCHPYTTCDAKTNVCVCKPVLEL--YAPVCGSDGQSLQTYDSIYHLNHTACMEERNIVKLYDGFCKGP------------GTCGHSSC----PIYSECDRVTNKCECRKTV-NLTIAEVCGSDNVTYQNEDALKGTACHQNETITVQHRGAC 735
            C   + C+ +T  C C  + V   +P CGSDG TY S   L  HAC    ++  +  GPC  C D  C     C A   VC   P  E     PVCGSDG    TY S   L   AC+++  I +   G C+              G C    C     I+ E D     C C  +  ++  + VCGSD VTY  E  LK   C     + V  +GAC
Sbjct:  540 CRFGALCEAETGRCVCPSECVALAQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPCETCGDAVCAFGAVCSAGQCVC---PRCEHPPPGPVCGSDG---VTYGSACELREAACLQQTQIEEARAGPCEQAECGSGGSGSGEDGDCEQELCRQRGGIWDE-DSEDGPCVCDFSCQSVPGSPVCGSDGVTYSTECELKKARCESQRGLYVAAQGAC 750
The following BLAST results are available for this feature:
BLAST of TCONS_00022575 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AGRIN3.787e-2130.80Agrin OS=Homo sapiens GN=AGRN PE=1 SV=5[more]
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