TCONS_00022588 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022588
Unique NameTCONS_00022588
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length764

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022588 ID=TCONS_00022588|Name=TCONS_00022588|organism=Clytia hemisphaerica|type=transcript|length=764bp
CTCACTACCTAAAGAATCTACCTAATTTTCTCTAGGGAACTTGATGGCAA
CATAAAATTTGCAGTGATAAGAGATCTTTACAACACCAAAGATGAAAGTG
ATAAGCAATTCACAAGGCGAATACTTGAAGAACAGCTTGAGAGCTCATTA
GAATCACAACTCTCATACATTATCGTTGAACCTAAAGGAATCGGggatga
aacaataaaatggaTTGCAGTTGGAAACTTTCTTCACAAAAGTGCTGTGT
TGTCAGGATTAACATGTTTATTATTGCCAATAATCACGCCAAAGCGTTTC
AAAATGTATGTTATTGTACCCCTGTTTTCATTGAACACTCTGTGCACATT
ACTCTACAATCTTAGCTGGCAGTTTGATCCCTGTTGTAAATATCAAATTG
AAAAAGATGATAACCGTCTAGAACAGTTGCATTTAGAGACATTGGCAACA
ACTTCTCCAGTTGTGCTTGTACACAGAGATGATAAATACAGGAAACGATT
GCATAATATTATTTCAGTGCTTGTTTTATCTTATGCTGGTTGGAAATGTT
TTTGGTATTATAAAAGCTAatgttttatttaaaatttgatcttatatttt
gtaattcgttttttttttctgatagaTTTTCTCAATACATTTTCGTATAA
CATTATTTGAAGTAGATTTAATgattcaaaaatgaaagaaaagttTATAT
ACATGGAATACATCAGTgttaacaaaatatttgaaggaATTCctggaata
aaataaaatggcaa
Run BLAST on NCBI

transcript from alignment at sc0000427:262712..263475

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022588 ID=TCONS_00022588|Name=TCONS_00022588|organism=Clytia hemisphaerica|type=transcript|length=764bp|location=Sequence derived from alignment at sc0000427:262712..263475 (Clytia hemisphaerica)
ttgccattttattttattccagGAATtccttcaaatattttgttaacACT
GATGTATTCCATGTATATAaacttttctttcatttttgaatcATTAAATC
TACTTCAAATAATGTTATACGAAAATGTATTGAGAAAAtctatcagaaaa
aaaaaacgaattacaaaatataagatcaaattttaaataaaacatTAGCT
TTTATAATACCAAAAACATTTCCAACCAGCATAAGATAAAACAAGCACTG
AAATAATATTATGCAATCGTTTCCTGTATTTATCATCTCTGTGTACAAGC
ACAACTGGAGAAGTTGTTGCCAATGTCTCTAAATGCAACTGTTCTAGACG
GTTATCATCTTTTTCAATTTGATATTTACAACAGGGATCAAACTGCCAGC
TAAGATTGTAGAGTAATGTGCACAGAGTGTTCAATGAAAACAGGGGTACA
ATAACATACATTTTGAAACGCTTTGGCGTGATTATTGGCAATAATAAACA
TGTTAATCCTGACAACACAGCACTTTTGTGAAGAAAGTTTCCAACTGCAA
tccattttattgtttcatccCCGATTCCTTTAGGTTCAACGATAATGTAT
GAGAGTTGTGATTCTAATGAGCTCTCAAGCTGTTCTTCAAGTATTCGCCT
TGTGAATTGCTTATCACTTTCATCTTTGGTGTTGTAAAGATCTCTTATCA
CTGCAAATTTTATGTTGCCATCAAGTTCCCTAGAGAAAATTAGGTAGATT
CTTTAGGTAGTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012674XLOC_012674Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022588-exon-sc0000427-1491911889:262712..263475TCONS_00022588-exon-sc0000427-1491911889:262712..263475Clytia hemisphaericaexon
TCONS_00022588-exon-sc0000427-1510915933:262712..263475TCONS_00022588-exon-sc0000427-1510915933:262712..263475Clytia hemisphaericaexon
TCONS_00022588-exon-sc0000427-1575043694:262712..263475TCONS_00022588-exon-sc0000427-1575043694:262712..263475Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000427supercontigsc0000427:262712..263475 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
88.0232	78.6678	11.2186	4.31944	36.9819	25.6813	31.4766	30.0065	36.2528	31.7604	30.9569	25.4586	18.1109	13.5985	32.4142	39.6935	48.9951	48.7921	12.0276	20.55	60.9399	59.8708	133.981	107.415	20.1779	23.031	41.6348	33.4891	73.0081	78.7209
Blast
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BLAST of TCONS_00022588 vs. Swiss-Prot (Human)
Match: TMM11 (Transmembrane protein 11, mitochondrial OS=Homo sapiens GN=TMEM11 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.365e-43
Identity = 72/166 (43.37%), Postives = 102/166 (61.45%), Query Frame = 1 
Query:   64 VIRDLYNTKDESDKQFTRRIXXXXXXXXXXXXXXYIIVEPKGIGDETIKWIAVGNFLHKSAVLSGLTCLLLPIITPKRFKMYVIVPLFSLNTLCTLLYNLSWQFDPCCKYQIEKDDNRLEQLHLETLATTSPVVLVHRDDKYRKRLHNIISVLVLSYAGWKCFWYY 561
            ++ ++YN ++  D QF   + +            YI++EP  IGDET +WI VGN LHK+AVL+G  CL  P+  P  +  Y+ +P   L+  C  LY +SWQFDPCCKYQ+E D  +L +L L TL +++PVVLV +DD +RKRLHN I++  L Y   K +  Y
Sbjct:   31 IVHEIYNGENAQD-QFEYELEQALEAQYK-----YIVIEPTRIGDETARWITVGNCLHKTAVLAGTACLFTPLALPLDYSHYISLPAGVLSLACCTLYGISWQFDPCCKYQVEYDAYKLSRLPLHTLTSSTPVVLVRKDDLHRKRLHNTIALAALVYCVKKIYELY 190
The following BLAST results are available for this feature:
BLAST of TCONS_00022588 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TMM117.365e-4343.37Transmembrane protein 11, mitochondrial OS=Homo sa... [more]
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