TCONS_00022607 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022607
Unique NameTCONS_00022607
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length427

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022607 ID=TCONS_00022607|Name=TCONS_00022607|organism=Clytia hemisphaerica|type=transcript|length=427bp
CTTTGCTGATATTGTTTTGCATAATCAAGGTCATTTGAATCAATATTTTA
TACCTAACTTCAGTGAAACGGTTTCGATGAACCATTTCAAATTGGAAAAT
GGTGACGAAGCTCACAAAGggtattttcaaatatttgtttCAACAAACGA
TCAGGAAACATTGAGACAAATGCTTCTAAACGTAACGGGAAAAAAGTCCC
TCCCTAGAACTCCAATCCAAGTGAAATTCGACGCTGAAGTTGGAGACGTT
ATTCATTCATCAACTTGTGAGGAAGAATTAAATTTACCAAATGTTTTTCC
AAATTATGAACAGTTTGAAATTCATGTTAAAGGAGCAATAGGAAATGGCC
AAAATCCTTTCAATGCTATTTGAATTCCTATGTTATTAAGATATCTTGGT
ACTACTATAGTTTACAGCTAGTTGAAC
Run BLAST on NCBI

protein sequence of TCONS_00022607-protein

>TCONS_00022607-protein ID=TCONS_00022607-protein|Name=TCONS_00022607-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
FADIVLHNQGHLNQYFIPNFSETVSMNHFKLENGDEAHKGYFQIFVSTND
QETLRQMLLNVTGKKSLPRTPIQVKFDAEVGDVIHSSTCEEELNLPNVFP
NYEQFEIHVKGAIGNGQNPFNAI
Run BLAST on NCBI

transcript from alignment at sc0000428:152851..153277

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022607 ID=TCONS_00022607|Name=TCONS_00022607|organism=Clytia hemisphaerica|type=transcript|length=427bp|location=Sequence derived from alignment at sc0000428:152851..153277 (Clytia hemisphaerica)
GTTCAACTAGCTGTAAACTATAGTAGTACCAAGATATCTTAATAACATAG
GAATTCAAATAGCATTGAAAGGATTTTGGCCATTTCCTATTGCTCCTTTA
ACATGAATTTCAAACTGTTCATAATTTGGAAAAACATTTGGTAAATTTAA
TTCTTCCTCACAAGTTGATGAATGAATAACGTCTCCAACTTCAGCGTCGA
ATTTCACTTGGATTGGAGTTCTAGGGAGGGACTTTTTTCCCGTTACGTTT
AGAAGCATTTGTCTCAATGTTTCCTGATCGTTTGTTGaaacaaatatttg
aaaataccCTTTGTGAGCTTCGTCACCATTTTCCAATTTGAAATGGTTCA
TCGAAACCGTTTCACTGAAGTTAGGTATAAAATATTGATTCAAATGACCT
TGATTATGCAAAACAATATCAGCAAAG

Coding sequence (CDS) from alignment at sc0000428:152851..153277

>TCONS_00022607 ID=TCONS_00022607|Name=TCONS_00022607|organism=Clytia hemisphaerica|type=CDS|length=372bp|location=Sequence derived from alignment at sc0000428:152851..153277 (Clytia hemisphaerica)
TCAAATAGCATTGAAAGGATTTTGGCCATTTCCTATTGCTCCTTTAACAT
GAATTTCAAACTGTTCATAATTTGGAAAAACATTTGGTAAATTTAATTCT
TCCTCACAAGTTGATGAATGAATAACGTCTCCAACTTCAGCGTCGAATTT
CACTTGGATTGGAGTTCTAGGGAGGGACTTTTTTCCCGTTACGTTTAGAA
GCATTTGTCTCAATGTTTCCTGATCGTTTGTTGaaacaaatatttgaaaa
taccCTTTGTGAGCTTCGTCACCATTTTCCAATTTGAAATGGTTCATCGA
AACCGTTTCACTGAAGTTAGGTATAAAATATTGATTCAAATGACCTTGAT
TATGCAAAACAATATCAGCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012692XLOC_012692Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022607-proteinTCONS_00022607-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022607-exon-sc0000428-1491911889:152851..153277TCONS_00022607-exon-sc0000428-1491911889:152851..153277Clytia hemisphaericaexon
TCONS_00022607-exon-sc0000428-1510915933:152851..153277TCONS_00022607-exon-sc0000428-1510915933:152851..153277Clytia hemisphaericaexon
TCONS_00022607-exon-sc0000428-1575043694:152851..153277TCONS_00022607-exon-sc0000428-1575043694:152851..153277Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000428supercontigsc0000428:152851..153277 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.180274	7.02293	6.93702	8.15999	14.6909	8.50265	10.5319	10.882	6.28634	4.54585	4.60851	0.0924102	0	0	0	0	0	0	0	0	0	3.66931	4.05447	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022607 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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