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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022627 ID=TCONS_00022627|Name=TCONS_00022627|organism=Clytia hemisphaerica|type=transcript|length=2605bpRun BLAST on NCBI protein sequence of TCONS_00022627-protein >TCONS_00022627-protein ID=TCONS_00022627-protein|Name=TCONS_00022627-protein|organism=Clytia hemisphaerica|type=polypeptide|length=393bp MESDKDLVSVELEPEKKGLVLKHRMYTVTSTLHKANVQRRYNDFIAFHEVRun BLAST on NCBI transcript from alignment at sc0000429:187205..200183+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022627 ID=TCONS_00022627|Name=TCONS_00022627|organism=Clytia hemisphaerica|type=transcript|length=12979bp|location=Sequence derived from alignment at sc0000429:187205..200183+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000429:187205..200183+ >TCONS_00022627 ID=TCONS_00022627|Name=TCONS_00022627|organism=Clytia hemisphaerica|type=CDS|length=13002bp|location=Sequence derived from alignment at sc0000429:187205..200183+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022627 vs. Swiss-Prot (Human)
Match: SNX8 (Sorting nexin-8 OS=Homo sapiens GN=SNX8 PE=1 SV=1) HSP 1 Score: 304.679 bits (779), Expect = 4.028e-93 Identity = 172/385 (44.68%), Postives = 244/385 (63.38%), Query Frame = 2
Query: 80 KDLVSVELEPEKKGLVLKHRMYTVTSTLHKANVQRRYNDFIAFHEXXXXXXXXXXXXXXXXKKIV-ANTEFIEGRRRALKRFLVLILRHPAIGKDPIVNYFLTFKGSDAGHKLKEQYKGVPDEFMTNEMASSAKDNVPADTQASLTSSRQQLYFIHKHIEQMKDILERLGGRSTAYAVDMLSFSKNLQALSEESNPVTEWATGGNKTWQKLQRGFKSLVVPFASIAEKSAMHSTHETEGVSDYLEMFMDITAAYKELVERHEKGVLRDHHMALHKMQQYKQRQMSTAMKGN---ENMDQLEHRIIAQEGAISNMENRNYFSLYCLQEETRFIHSNMNMVVKMFQNLVDIEIRKHTELCTLWDDMRQPINHL-AESANTPGSPVSP 1219
+D V VEL PEKKGL LKH Y V+S K++V RRYNDF+ F E+LL ++PYR+VP LPPK+++ A+ EFIE RRRALKRF+ L+ RHP +D ++ FL+F GSD +KLKE + V DEF+ ++A+ AKD +PAD QA SR+ + I+ +++D ER+ R+ A D+L F K L A+ ++ P+ WA + TW L++ K L V FA +A+K+A E V + L +F+D+ +YK+L ERHEKGVL H ALHK K RQM +A N E+++QLE RI+ QE AI ME RNYFSLYCL +ET+ IH + + + + V+ +I+ H E+ +W+D+R ++ L A +T P SP
Sbjct: 74 RDTVQVELIPEKKGLFLKHVEYEVSSQRFKSSVYRRYNDFVVFQEMLLHKFPYRMVPALPPKRMLGADREFIEARRRALKRFVNLVARHPLFSEDVVLKLFLSFSGSDVQNKLKESAQCVGDEFLNCKLATRAKDFLPADIQAQFAISRELIRNIYNSFHKLRDRAERIASRAIDNAADLLIFGKELSAIGSDTTPLPSWAALNSSTWGSLKQALKGLSVEFALLADKAAQQGKQEENDVVEKLNLFLDLLQSYKDLCERHEKGVLHKHQRALHKYSLMK-RQMMSATAQNREPESVEQLESRIVEQENAIQTMELRNYFSLYCLHQETQLIHVYLPLTSHILRAFVNSQIQGHKEMSKVWNDLRPKLSCLFAGPHSTLTPPCSP 457 The following BLAST results are available for this feature:
BLAST of TCONS_00022627 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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