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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022633 ID=TCONS_00022633|Name=TCONS_00022633|organism=Clytia hemisphaerica|type=transcript|length=4099bpRun BLAST on NCBI protein sequence of TCONS_00022633-protein >TCONS_00022633-protein ID=TCONS_00022633-protein|Name=TCONS_00022633-protein|organism=Clytia hemisphaerica|type=polypeptide|length=829bp LGISGSPFIVNCKADVQVLFEVRQFQFDEQKLKLDLRNIFKPERVFVFESRun BLAST on NCBI transcript from alignment at sc0000429:16978..26775- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022633 ID=TCONS_00022633|Name=TCONS_00022633|organism=Clytia hemisphaerica|type=transcript|length=9798bp|location=Sequence derived from alignment at sc0000429:16978..26775- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000429:16978..26775- >TCONS_00022633 ID=TCONS_00022633|Name=TCONS_00022633|organism=Clytia hemisphaerica|type=CDS|length=34860bp|location=Sequence derived from alignment at sc0000429:16978..26775- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022633 vs. Swiss-Prot (Human)
Match: ANPRA (Atrial natriuretic peptide receptor 1 OS=Homo sapiens GN=NPR1 PE=1 SV=1) HSP 1 Score: 565.074 bits (1455), Expect = 2.072e-179 Identity = 314/637 (49.29%), Postives = 422/637 (66.25%), Query Frame = 1
Query: 247 WLHGEPIADTPPCGFDN--LKCAQDEISKGTILGLAISLTMLGVIVFVIPVFLYRNYHLKKELNLQLWKI-----SAAELFYHDWSVXXXXXXXXXXXXXXXXYDIPTK-QQFIPTAYYKGTLVAVKKINKKSVELSKNILMELKQMRDVRNENLNQFIGACVEPNNVLIITSYASRGSLQDILENNEIELDAPFILSLVYDIIKGMLYLHSTDIKSHGNLKSSNCVIDSRWVLKISDFGLNTFRSRHGSVSSFESEPINSL----LWKAPELLRIDIPPTHRGTQKGDVYSFGIILQECHTREGAW---GSYQDPEAIIEKVKMRHNPPFRPVVSDLISRAEGLHDVMKKCWLENPEERPYFSELRKDVEVMMKANGMRANLVENMILMLEKYSKSLEEIVDDRTASLREEKHKVEALLERMLPKSVANQLMQGREVEAELFEEVSIYFSDIVGFTSICSSITPMEVVNLLNTLYTMFDNIARDYDVYKVETIGDAYMVVSGLPIRNKKQHAKEIALMSLDILRNTKTFKIRPN-QQQIKIRIGLHXXXXXXXXXXXXMPRYCLFGDTVNVAARMESTGEALRIQISEETKNTLAASSASIANEEFLVEPRGFTDVKGKGNVQTYWLVGMRENLTQ 2109
W G P D P CGFDN C QD +S +L L SL++LG+++ + F+YR L+KEL +LW++ + L H S + S + Q F TAYYKG LVAVK++N+K +EL++ +L ELK MRDV+NE+L +F+GAC +P N+ I+T Y RGSLQDILEN I LD F SL DI+KGML+LH+ I SHGNLKSSNCV+D R+VLKI+D+GL +FR + E +++ LW APELLR+ PP RG+Q GDVYSFGIILQE R G + G P+ IIE+V PPFRP ++ L S E L +M++CW E+P+ERP F ++R + + N +N+++N++ +E+Y+ +LEE+V++RT + EEK K EALL ++LP SVA QL +G V+AE F+ V+IYFSDIVGFT++ + TPM+VV LLN LYT FD + ++DVYKVETIGDAYMVVSGLP+RN + HA E+A M+L +L ++F+IR Q+Q+++RIG+HTGPV AGVVG MPRYCLFGDTVN A+RMES GEAL+I +S ETK L F +E RG ++KGKG V+TYWL+G R + T+
Sbjct: 443 WPLGYPPPDIPKCGFDNEDPACNQDHLSTLEVLALVGSLSLLGILI--VSFFIYRKMQLEKELASELWRVRWEDVEPSSLERHLRSAGSRLTLSGRGSNYGSLLTTEGQFQVFAKTAYYKGNLVAVKRVNRKRIELTRKVLFELKHMRDVQNEHLTRFVGACTDPPNICILTEYCPRGSLQDILENESITLDWMFRYSLTNDIVKGMLFLHNGAICSHGNLKSSNCVVDGRFVLKITDYGLESFRD-------LDPEQGHTVYAKKLWTAPELLRMASPPV-RGSQAGDVYSFGIILQEIALRSGVFHVEGLDLSPKEIIERVTRGEQPPFRPSLA-LQSHLEELGLLMQRCWAEDPQERPPFQQIRLTLRKFNRENS--SNILDNLLSRMEQYANNLEELVEERTQAYLEEKRKAEALLYQILPHSVAEQLKRGETVQAEAFDSVTIYFSDIVGFTALSAESTPMQVVTLLNDLYTCFDAVIDNFDVYKVETIGDAYMVVSGLPVRNGRLHACEVARMALALLDAVRSFRIRHRPQEQLRLRIGIHTGPVCAGVVGLKMPRYCLFGDTVNTASRMESNGEALKIHLSSETKAVLEEFGG------FELELRGDVEMKGKGKVRTYWLLGERGSSTR 1060 The following BLAST results are available for this feature:
BLAST of TCONS_00022633 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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