TCONS_00022662 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022662
Unique NameTCONS_00022662
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1271

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022662 ID=TCONS_00022662|Name=TCONS_00022662|organism=Clytia hemisphaerica|type=transcript|length=1271bp
tttagtgattgattgataactttggtatgtatttgtttatgtttgatttt
ttatttcgaagaccagcctacagctatgtcgagattgcaagacctatgtc
gagattagacgactctacggtactTACAGatcaaatattttgaataatgg
CAGACAAGCGTGGCTCGTCACGTTTAAAAGAGCAGAACAAACGACATGTT
ATTGATACGGCAACACGTGCCAAACGTCAAAGGAAACAACTCGAATCTCT
TGAAAACGATAACTTCCATGATGACCCTCACTTCCAAATGGACcaatttt
taagtaaaaagaAACTCCCTTCTTTCTCAACAGACGGTATTGATTCAAAG
AAAAAACGTAAATCGAAAGTTGGAGATATATTTAAATTGAGAGCTAAACG
GTCTTTTCAAGCTTTGCTAGAGGAGCTTTCAGCTGAAAGCAAAAAAGGAG
AACCTAACTATATAAATGCTGCTGCGAAAccatcaaattttccaaatcgt
AATTTTTGTGCTGTTTGTGGATATTTTTCAAAGTACACATGTGTGACTTG
TGGGACTCGTTATTGCTGTGTGAATTGCTTGAAAACTCATAAAGACACCA
GATGCATGAAATGGACTGCATAATCTTCGGAAATCAATTCTTTCTTAACT
TTGGTTGGTTACCATACAAAGATGATGATGTGCTCATGGACTTTCACATG
TTTCCACATAGTTTCGAATATGAAGATTTTCTATTGGTTTAAAATCACAA
CGTTAGCCAATGTAATAGCTTCATTTTGAACCTCAGAGCATAAATGTTAT
GAAAGTGTTGTTTATGTTATCATCCTCAATGGCATTGCATCGAATGGGAT
ATTTTACATGACTTGAAGCATAATTCACCACCAAAATCGAATCTCTATTT
GAATAATTTATCATTCTGACGCCTGTCTACTACAGGGCATTCTGATTTAA
AGATGTATGTTAGAAAggctaatttatttatttatgaaGGAAGGAGTTTT
GGCCTTAATTACAATTAACCTTTTGTTATTGTGATCCATGATTGACTTGA
AGGAATTTTATGGTTTTATTTTCTATCtataaaattgtaatttttagaat
tatttgtTATGTTCACTTATTGAAATGATAATTACAGTTGTCTCCCCATT
CCAAAGATTTGACAGAATAAGAATTCGATCGTAACCTGCATATTGACAGG
CATAATGATTAATTGTTTGTACCATGCAGTATCTTGTATACATAAGTCAA
TGAACATTTTTTAGCTACAGA
Run BLAST on NCBI

protein sequence of TCONS_00022662-protein

>TCONS_00022662-protein ID=TCONS_00022662-protein|Name=TCONS_00022662-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MADKRGSSRLKEQNKRHVIDTATRAKRQRKQLESLENDNFHDDPHFQMDQ
FLSKKKLPSFSTDGIDSKKKRKSKVGDIFKLRAKRSFQALLEELSAESKK
GEPNYINAAAKPSNFPNRNFCAVCGYFSKYTCVTCGTRYCCVNCLKTHKD
TRCMKWTA
Run BLAST on NCBI

transcript from alignment at sc0000430:201018..212027+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022662 ID=TCONS_00022662|Name=TCONS_00022662|organism=Clytia hemisphaerica|type=transcript|length=11010bp|location=Sequence derived from alignment at sc0000430:201018..212027+ (Clytia hemisphaerica)
tttagtgattgattgataactttggtatgtatttgtttatgtttgatttt
ttatttcgaagaccagcctacagctatgtcgagattgcaagacctatgtc
gagattagacgactctacggtactTACAGGTAAGGTCTTATTAAatgatc
aggatgataaaaaaactcataagctttcccgtattacatttatttacact
cgttcttttgttttaaaatagcttaCTTACatttgtgactccccaagcaa
tTTGAAGTACATAAAAGTCCGATCGGTGTAAAAAGACCGATCTTCTTTGG
CCTCTACTTGACCGGTCTTTTTACCCCGTTTTTACCTTTTGGGCCGCTTG
GATATTGAAGAAGGCCGATGCGAGGCCGCTTATTAAAAGCGGTCACAGTG
AAGCGGCCACATAGTAAGTTTTAAGCCGCTAACAGCGGCCCTTATCGGAC
ATATCGGCCACTAGCGGCCCTTAGCGGCCATTAGCAGCCATGAGCGGCCC
TTagctttgttttttaatttacttacattttcaagtacatttggaacaaa
gaaagattttttcagaaatcaaaaagggcaaaacaaaaaaaaaaagataa
aagggagGGCGCTCGAAATAAAGAAGGGCCTAAGAAGCCATCAAATgttg
taaaataaaatgaaatgattgCTTCCCCAGTAGAAAAGGGGGAAAGCTTC
CAAAAGGGCATCTTGCAGGGTTTGCTTTCTTATAAGCTCCTGATTTGTCA
CAAGCTCCTGATCTGTGATGTTTCGAATGCTTGATGCAACTTTTAGAATG
CGagagagaaaaagtgaaaatcNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTGCACTCTGCTTCGTTCgttgttatgatttgaaa
agaaatgtaagAGAGCAAAGTATTTCGCTATTCAAAAATACTAGATAAAC
AAATTCAGAATATGTaagtaccgtaacttggtctaatgtcgacatccctc
ctctaattccgacacccttctttcgagacaggaataatatgaaagcttga
atcactgattgaaaaaggattattcttctctgaccactaagcaaaataaa
acagtttcaacctttctatcaatttcagctgataaaaagggtgtcggaat
tagaggagggatgtcaacattagaccaagctacggtagttaaaagaacaa
ttttcgaAACAACCTTGTCTCACCACGAACGATCCTTTTGTTAATATCCC
CGTCTCAGTCAGTGGAATTCTCTATTATTATTCTAAACAGTGTAAAATTC
TTTATAGCCAAAATTCGGTAAAACTTTAACCGAATTCCACAAGCTTAAGC
CAAATTCAATAATTACTTTTACCGAATTAGTTAAACTTTTTACCGAAGCG
ATTTGGTTAAACAGCCGAATTTAACCGAAaccattttaccgaaattcGGT
TATATTTTTAAGAAGATCCCGAAGATATAAGcgaaaaaggattaattaat
caaaTACAAcaaggattaaataatcgaatatgggagattaaaaataattg
aatatagGAGAATAAATAGTCGAGTCATTAATCAAACTTCATAAACGAAA
ATCGATTATatctttgagaagatccctaaagaAAGCCGCTAAATAGGACG
CTGGCCGCTAAATAGGCCGCTGGTCGCTAAATAGGCCGCTGGCCGGTCTC
TTGATCAAGAAAAAGCCTCTAATAGAGGCCTTGAGGCCGTTCTTGGAAAA
ATTCCATTGGCCGCTTCATGGCCGATCTTCTAAAATGTTAGGTcgcttga
aattttcatgttttgattgcaatgtagtcttctttttcattttttgagct
tggtcggtcgcagactggacgtcaaacttcgaagctgattgcatcaactt
ttttatcaatatttcaaacgaAGGAAACTGTATCaagctgatttttacag
aaatgctttctaacatattcatcgttttggacaagtattttttggagtgg
gagttgaagcgttttttcttacgaaacttttttgtccacaggtagccatt
ttttatttttttcgaaaaatacgGGTTTTTCATGTGCTTCCGTGCAAATT
TGGATCATTCGGATTCTACTTGTTCTTTTCTAGAcctttttttacacagt
acgggaaataAGTCAAGGCAGattactaccaaaagaaattctcaagaggt
ttgtttttgcatgacttttctgggttcaaagacgttcggtcgccaactag
accggtcgccaactgggcaggggactctatagtaaaactattcagaaACT
Tgtacctttttacagaatttcaaaaaatcttttatttctggagatatatt
aataagtttagacatgggtagttcgcgTTTGTGTTTCgtgttcccaaacc
aaacgcacgtgtgGACGacatcaatttttaaaataaattttggcacgaaa
ttccaggcaaactttaaacaGAAAGTATcagaattccatgaattttactt
aattttgcattaaagtattaGAATTTCCATGATTGCTTTAGGTTACAGTA
ACAGAGTTCCAcggttttgataggtattttgcaaatttgttacggaaatt
ctGGACTTTGAGTTTCTTGAAatgaaagcaatttgctacaGAGAATTCCA
TGTTGTCCATTGCGCATTGGGCGTGGGTAACAgataaaaactggaatggc
ccaataccATAGAATCGTccaatatcgacatgcgtcttgttatttcgaca
tagctgtaggctggtcttcgaaataaaaaatcaaacataagcAAATACAT
ATATACCAAAGTTaccaatcaatcactaaattgtactctccctatcacgt
cacagattgttgatatatgagaaatgtgaagtgttattacttatttttga
aaaaaaaactttaacgatgtagtcatCACTAAAAACCTAATTGGCATGCT
GCTTTGAAAGAAGATATCCAATCataacaacattttgcacgccaGCAATT
TTTTAGTAGGTctttttaccgtgaactgaaaataataaaaagaacccggt
ttacttttgaatttaatgtgaccgaCATACCGACATGCGCCCTCTTAGCG
CCTAGCTAGAGCGTTTGataaataaggaaggggaaaccaggccAACTAAt
cgcgcaaattatttttatcatgtgacttgaagcgtaataaagttgtaaaa
ttttaatgataggCACGAGAAAGATGATTAAAGTTTGCATGTGTTTCATG
TTTCATATATGTTTTGTAAAATAGcttatataataataataataccccgg
tggaggttctataaattaacccacgttcgttcgttcgttcgttcgttcgt
tcgttcgttcgttcgttcgtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcagga
ttggctcattagttttttctgattttttgcacaatgatgcaaaatggcaa
tgcccagaacgtgacggagcccgatttttgagaaaaaatttatttagtca
aatttgggccaaaaactacctaaaaatagggttttttagactttgtgtaa
aatcctgtcattacttttttctgattttttgtacaaagatggtgggcaag
attctctaaagaatggctgaagtggtttttcctggaaaattcttattcgc
cttaaaagacggattttcgtatttttggggaaaatccctttaaccaaata
agacaATATaacttttctcaatgttgactcatacattatttttttctgat
tttttgaacagtgatCCAAAATGGCATtgtccaaaatgtgacggagccag
atttttaaggaatttttttttgggcaaatttgggccaaaaacagcttaaa
aggttttttgggtctgaatggtttaagtgattttNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttatt
tttccattctgaatttttgtacaattattgtcacttttttcttattttca
tctgatgttaatcattaggtaggtccattcagcatgttgcttgttttaat
tgaaagaattacaatgtttactgaacttctagtttgatggatgaacttgt
ttgataagagtgataccaagaatttcattcaaggtttgttttgattactt
TACAGATCTGGTGTTGACTTTAAAGGAGgggtgtcgatattagacgattc
taAGGTAACTCTTTACCACCATTCTGATTTTAATTATACTAAAAAAGAAT
GTAAAAGACTTTCTTGCAAGATTCTCTTTCCTGAGTAATTCTACTGCCAC
TTctcccagacggtgtcaatcgaacaacaaGCTCTAACAAAAATTGCGAT
TGAAccaatcgaatgtaattgaaCACGattgaataattgcgattcgattg
tcaaacgcaatagTTGTTTAGGAGAACAGTCTATTAAATAACAAATTACT
ACTCCACATAGCTACCTTACTTTCCCTCACAGCCAGTAAAaacgtgataa
attatcttgtctcaaGGTGACTGCTGTTGgcttttgataaaagtttgcCA
GTCATTTATCGGCTATAAAAGACCATCTAAAGGCCAATCCGATTGGTAAA
TTGCACCACTGTTtgcaacatttcaaaatttgcctGCTACAGGACAGAAA
ATTGTTGCAACCATCAATAAGCAAAATGTCTCTAAAAATGGAAGAAAACA
TTATATTAAACCATATTCTCAAAAAAGACCAGGCAGCTATTGTTCAATAT
TTTTAGAATGAAATGTTGTTTGGCTTCAAAGCAAACTTCTCCTGCAAGAG
ggtaatttattttctttattagaTTACTGACTCATTTGGATGTATTTGCA
ATCAAAATATCATTTGGCAGGGAAATCATGGTACNNNtgtcatggagacc
acctattttttggttgcttttcggactgattttgcaaaaaaagctaaaaa
atgattatttctgtgacacatttttcacgtaGTGCAAAactgtgcaaaaa
ttaatgtttttcccttagaattaaagtctttttatattgacaaaaaattt
cgagaattttttgtttgcagcaaacaactttccaacagaacattttttca
aattataaaatttttcagattttttcagaaaagtcatccaaaaaattaat
agaattacaaaaaatagctaaaatttgctaattttaccagttttaactac
ccaggtagtaaaattttttcaacatttaacacatagataccgcCCATTTT
aatatttaactaccctgggtagtaaatttttttttcgatttttcgtcaca
ccaccaccgtagtaaacgtcattatgtctgagattttactaccgaccccc
ccctggtACCATGTACAAGAAATGGGTTCTAAAGTTTGAAGTCAGAACTT
CTTGCCAGTGACCCTGTAGGATAAATTTTAGTTGTGAAAACTCTGTCTTT
AGGTTGGCttgaaatgattttattttgaaatatatataTGTAACAGTCAT
TATTTtcagatgaatacttttatttatttgaattcaTGAAGGTTCAaggt
tttttaacttttatttcaaaacttctCTCCTTATACAGCTGCAATAGCta
attgaaaaatgaattgATTTTGTTAGTAACCAGCATCAGCTCAACCGCTG
AAACCATGGAAAGGGTGGTTTTTTGTATGGTTTGGgttatgattattttt
tattccttttttaaCATTGTTTAgatttatatataaaaaatcaaaagaaa
gaaataatgcATAACTATGGCCGATGATGGCATTATTAAACTTGtagaaa
atgactttttctttaattttaaacAAATCAACGAATTTCTAAACAAGACA
AGCTATGAAGCCATTTCCATTATGgtattttttcaagtcattgcCATTTC
ATTTATTATTGGGCGTTTTTCCACTCTTTACCTGTTGATGTGGATTTCCT
CAACTTTTTTGATATACAATATTGCTGGTCCATTTTTCTGTTTGAAATGG
ATGTTAGTGTTTTCAAGTTTGATATGgcactttttattatttttatggaC
ACACCCATATCTGATTGCTTGTGTTATTTTGATATATGGTGCTTATAGTA
TAGTCAGCATTTGGTCTTCCTATGCAAAGGAAGATGAGAAAGAGCTCCAC
AAAATTCTAGCTCTGGAGAAATTAGAATCCATTGAAGAAAAGACCAAAGC
CATGAAACAAGAGTTGGAGCGTCTGTCAATGGAAGTTCGATCATTACAGG
ATCAGAGAGGGGGTGACCATGCAAGTTTTGTGAGTGAATGGCTAAATGAT
GTACCGTATCCACTTGATCGAAGAAGGGAAGCAGCTAAATCACATCAAGG
AACTCCAAGTCGTTTTCGAAGCTGAAAAATGATCCTTTCTATAAAAATGT
CTTGCAAACTAAAGTCCGggtctaaaatattaaaaattttagcAAGTGCA
ATTTTGATAGCATAGCAACTACAATAAAAATCTCTATCTTGACCATCTTC
TATCTAGAGGAGCTTGGACCAAAAAATATGGCCCCTATAATGCATTCAAA
AATGCATTCCAGAAAATGCATTCCAGTTTTTGACTCTTTGAGAGTTTTTC
TACAGATACTTCAATTctaacatattatataccacTGAAAAGATAGATAT
AAAAGCACTGTAATTTCtaggaaaagaagaagaaaaataagttGAACTTC
TTATTCTTTAAGTctagaaacttcatttttggtacaGAAGCATTTTACTG
TAAAGCTACTTGATTTCAGCTATAAAGCTATTTTTCCCATTAAGTTCTTG
CTAAGGTCTAACTAAGGTTAATGCCTCTAAAAGGTAGCTTATTAGAATAG
ACTTTTGGtgttattttatcattttgtatATAAATCAGAGCTCTACGCAA
ATGAGCATGCAAGGTTCAACTTGCAAatattttgtagaaaaaaatttata
taataGAAAATAGAGATTTAATAGAAATTTGTTATTATTTATGCATCTGA
cattttttatagttttttcaTTTGACACGTCATTTTGATCATGAAAGAAT
CTTCGTGTCTCTTTAacagatagagtcgatattttacatATGGATGGCTC
AGTAATCTAGGATTTATAGGCAAtctttcaattattttcacGGTGTCCAC
TGAATTAAACATTGGAAGAATCCAAGGTTCGAAATGTGAACCACTGCCTC
ACACCTTGACAACTTGGCCATCAGAGAATTTAAAGAAAGACATCAAGGAA
GTCTTTCTAATAATAAAGGGAGGTTTTTGCTGACATGTCTGTAAATACGG
TAGAATCTCCGCAACTTAGAATTTTGAAGGTCAGAGCAATGTCAATTGCA
TTCAGGTTTGAATTTTGAGGTTGTGATGTTTTTTTACCCATCAATTTTTG
ATTAGTCGCAGTGGAATGTTAATGTGACGTCACCCAGCTAAACAAAAATA
ACTTGCCCACCGATATTGATGTGTGattaagataaaataaaattcaaatt
ttttgattgcaTTTCCTGACCAAGTATAAGTAAACTGACATTGGTCTGAG
TTTGGAGTTTCAAGTTAACTGATTTGAACGAAAATTGGTAAACTGGCATT
TCTTCTCTTACTCTTAAGCAGAAAATTTCCACTCAATGTTAGCTATTTCA
CTGCTTCAGACAAGAAAATGATGGTCAACATCGACAACAGGTTTTTGTTT
CCTGGAAAAGGCTATTATTAGAAGAGTTTTAAAATCTTTGTAGATTGGta
ttttagaaatttagaatttatttgataaagttATTTACTTTTATACATTA
CTTATACACAATACGTTTATGTATTATAAATGGGAATAATCCATGTAGTA
TATGATAAGAAATATTTACTGAGCTAGGCTTatgattgaaatatattttt
agagttgatgtgtttttctttaaaatctcTTACAAGATTCTACAATACCT
ATCTTTGTTCTTTAACCGTTTCTTTTATGTCAAACTCGTTATAGTTCCAG
GAGTGTTCAGTTTTGATAGAATTACTAACCGTTTTTATGTTCATTTTCTT
ATCTAGACGCTTATCATGATGcatttgtttaaagattttattttcatttg
caaaatgctcattttcagatcaaatattttgaataatggCAGACAAGCGT
GGCTCGTCACGTTTAAAAGAGCAGAACAAACGACATGTTATTGATACGGC
AACACGTGCCAAACGTCAAAGGAAACAACTCGAATCTCTTGAAAACGATA
ACTTCCATGATGACCCTCACTTCCAAATGGACcaatttttaagtaaaaag
aAACTCCCTTCTTTCTCAACAGACGGTATTGATTCAAAGAAAAAACGTAA
ATCGAAAGTTGGAGATATATTTAAATTGAGAGCTAAACGGTCTTTTCAAG
CTTTGCTAGAGGAGCTTTCAGCTGAAAGCAAAAAAGGAGAACCTAACTAT
ATAAATGCTGCTGCGAAAccatcaaattttccaaatcgtAATTTTTGTGC
TGTTTGTGGATATTTTTCAAAGTACACATGTGTGACTTGTGGGACTCGTT
ATTGCTGTGTGAATTGCTTGAAAACTCATAAAGACACCAGATGCATGAAA
TGGACTGCATAATCTTCGGAAATCAATTCTTTCTTAACTTTGGTTGGTTA
CCATACAAAGATGATGATGTGCTCATGGACTTTCACATGTTTCCACATAG
TTTCGAATATGAAGATTTTCTATTGGTTTAAAATCACAACGTTAGCCAAT
GTAATAGCTTCATTTTGAACCTCAGAGCATAAATGTTATGAAAGTGTTGT
TTATGTTATCATCCTCAATGGCATTGCATCGAATGGGATATTTTACATGA
CTTGAAGCATAATTCACCACCAAAATCGAATCTCTATTTGAATAATTTAT
CATTCTGACGCCTGTCTACTACAGGGCATTCTGATTTAAAGATGTATGTT
AGAAAggctaatttatttatttatgaaGGAAGGAGTTTTGGCCTTAATTA
CAATTAACCTTTTGTTATTGTGATCCATGATTGACTTGAAGGAATTTTAT
GGTTTTATTTTCTATCtataaaattgtaatttttagaattatttgtTATG
TTCACTTATTGAAATGATAATTACAGTTGTCTCCCCATTCCAAAGATTTG
ACAGAATAAGAATTCGATCGTAACCTGCATATTGACAGGCATAATGATTA
ATTGTTTGTACCATGCAGTATCTTGTATACATAAGTCAATGAACATTTTT
TAGCTACAGA

Coding sequence (CDS) from alignment at sc0000430:201018..212027+

>TCONS_00022662 ID=TCONS_00022662|Name=TCONS_00022662|organism=Clytia hemisphaerica|type=CDS|length=477bp|location=Sequence derived from alignment at sc0000430:201018..212027+ (Clytia hemisphaerica)
atggCAGACAAGCGTGGCTCGTCACGTTTAAAAGAGCAGAACAAACGACA
TGTTATTGATACGGCAACACGTGCCAAACGTCAAAGGAAACAACTCGAAT
CTCTTGAAAACGATAACTTCCATGATGACCCTCACTTCCAAATGGACcaa
tttttaagtaaaaagaAACTCCCTTCTTTCTCAACAGACGGTATTGATTC
AAAGAAAAAACGTAAATCGAAAGTTGGAGATATATTTAAATTGAGAGCTA
AACGGTCTTTTCAAGCTTTGCTAGAGGAGCTTTCAGCTGAAAGCAAAAAA
GGAGAACCTAACTATATAAATGCTGCTGCGAAAccatcaaattttccaaa
tcgtAATTTTTGTGCTGTTTGTGGATATTTTTCAAAGTACACATGTGTGA
CTTGTGGGACTCGTTATTGCTGTGTGAATTGCTTGAAAACTCATAAAGAC
ACCAGATGCATGAAATGGACTGCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012731XLOC_012731Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022662-proteinTCONS_00022662-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022662-exon-sc0000430-1491911889:201018..201146TCONS_00022662-exon-sc0000430-1491911889:201018..201146Clytia hemisphaericaexon
TCONS_00022662-exon-sc0000430-1510915933:201018..201146TCONS_00022662-exon-sc0000430-1510915933:201018..201146Clytia hemisphaericaexon
TCONS_00022662-exon-sc0000430-1575043694:201018..201146TCONS_00022662-exon-sc0000430-1575043694:201018..201146Clytia hemisphaericaexon
TCONS_00022662-exon-sc0000430-1491911889:210886..212027TCONS_00022662-exon-sc0000430-1491911889:210886..212027Clytia hemisphaericaexon
TCONS_00022662-exon-sc0000430-1510915933:210886..212027TCONS_00022662-exon-sc0000430-1510915933:210886..212027Clytia hemisphaericaexon
TCONS_00022662-exon-sc0000430-1575043694:210886..212027TCONS_00022662-exon-sc0000430-1575043694:210886..212027Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000430supercontigsc0000430:201018..212027 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
31.5545	29.2314	15.3535	13.6938	18.0941	12.3011	12.3251	14.8366	10.5872	8.88703	7.79684	7.29369	8.34926	6.92564	5.87409	6.04952	9.27753	7.52417	2.84823	3.59472	7.5557	7.26818	25.458	22.6762	8.96004	11.2092	6.84523	6.43463	13.555	14.2391
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007529Znf_HIT
Blast
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BLAST of TCONS_00022662 vs. Swiss-Prot (Human)
Match: ZNHI1 (Zinc finger HIT domain-containing protein 1 OS=Homo sapiens GN=ZNHIT1 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.027e-43
Identity = 80/158 (50.63%), Postives = 106/158 (67.09%), Query Frame = 3 
Query:  147 MADKRGSSRLKEQNKRHVIDTATRAKRQRKQLESLENDNFHDDPHFQMDQFLSKKKLPSFSTDGIDSKKKRKSKVGDIFKLRAKRSFQALLEELSAESKKGEPNYINAAAKPSNFPNRNFCAVCGYFSKYTCVTCGTRYCCVNCLKTHKDTRCMKWTA 620
            M +K+ S R ++  +R V+D A R +R  +QLE+LENDNF DDPH  + Q    K+LP F  D    KKK+K++    FKLR +++FQALLEE +    +G PNY+ A A P + P R FCAVCG+ S YTCV+CG RYC V CL TH++TRC+KWT 
Sbjct:    1 MVEKKTSVRSQDPGQRRVLDRAARQRRINRQLEALENDNFQDDPHAGLPQL--GKRLPQFDDDADTGKKKKKTRGDH-FKLRFRKNFQALLEEQNLSVAEG-PNYLTACAGPPSRPQRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQETRCLKWTV 154
The following BLAST results are available for this feature:
BLAST of TCONS_00022662 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZNHI18.027e-4350.63Zinc finger HIT domain-containing protein 1 OS=Hom... [more]
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