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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022677 ID=TCONS_00022677|Name=TCONS_00022677|organism=Clytia hemisphaerica|type=transcript|length=859bp
AGACAGGCAACAAGCATATAAAGATATCGCTCACGCTGAACGATTTGGAA
AGGATATTACTGACTTTATGGTTGATTCTCTAAATGATGAAAAACGGAAA
CCATTAGAACCGAATAGTGGATGCGAGCCACcacccaaaaaacaaaaagg
gaAAGACAAGATGTTCCAGGGCAGACTTGAGAGTgctaaaaaacttgaaa
atgttaTGAAGGTTAGAAAAGTTGTGAAACATTCAGTACTAAAAACGGAA
GTACATATCGTTGGAACTTCGTCCGGCAGGGTACATTACAACGTTACAGT
GTGTAATGTACCTACATGCACCTGCCTAGACTTTAAAAAACATGGGTCAG
CCGTATCATGTAAGCACATtatatttgtgtttatttttaTGCTTGACTCA
GAAGAATTTTCCAATGCTCGTCACATCGGTGACGAGGATCTGAAAAACAT
CAACGCGAAATTTACTCTGGATGATAAATACGGAGATACACCCAAACAAT
CTGCCTCAACATCAAATAAAAgccggaaagaaaatttggaaagtCACCAT
CTGTACAATCAAGCTCAAGTATTTACCGTACACAAAAAAAGCAAACGAAC
CGCAAAATGTTCTGGCCATAGATGTAATAAAATTCTTCAGATTGGAAAGA
TTTGCATCAGAGTTGACGGGGCACTATCGGTCTTGTTTGAGAAACTGCAA
GTTGTGGAGAGGACATTCTATTTCTGCGCGGCACATTCATGTCTGCTGCA
ATGTCCTAAGTGGTCTAACATCAGGCCACCTGCTGATACAAATGGTCTTG
TGTTTGAAGATGGTTTAACTTTAGAAAATATTCAATTCTATGCTGATGTT
TAGTAGTAG Run BLAST on NCBI protein sequence of TCONS_00022677-protein >TCONS_00022677-protein ID=TCONS_00022677-protein|Name=TCONS_00022677-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
DRQQAYKDIAHAERFGKDITDFMVDSLNDEKRKPLEPNSGCEPPPKKQKG
KDKMFQGRLESAKKLENVMKVRKVVKHSVLKTEVHIVGTSSGRVHYNVTV
CNVPTCTCLDFKKHGSAVSCKHIIFVFIFMLDSEEFSNARHIGDEDLKNI
NAKFTLDDKYGDTPKQSASTSNKSRKENLESHHLYNQAQVFTVHKKSKRT
AKCSGHRCNKILQIGKICIRVDGALSVLFEKLQVVERTFYFCAAHSCLLQ
CPKWSNIRPPADTNGLVFEDGLTLENIQFYADV Run BLAST on NCBI transcript from alignment at sc0000430:99995..100853 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022677 ID=TCONS_00022677|Name=TCONS_00022677|organism=Clytia hemisphaerica|type=transcript|length=859bp|location=Sequence derived from alignment at sc0000430:99995..100853 (Clytia hemisphaerica)
CTACTACTAAACATCAGCATAGAATTGAATATTTTCTAAAGTTAAACCAT
CTTCAAACACAAGACCATTTGTATCAGCAGGTGGCCTGATGTTAGACCAC
TTAGGACATTGCAGCAGACATGAATGTGCCGCGCAGAAATAGAATGTCCT
CTCCACAACTTGCAGTTTCTCAAACAAGACCGATAGTGCCCCGTCAACTC
TGATGCAAATCTTTCCAATCTGAAGAATTTTATTACATCTATGGCCAGAA
CATTTTGCGGTTCGTTTGCTTTTTTTGTGTACGGTAAATACTTGAGCTTG
ATTGTACAGATGGTGactttccaaattttctttccggcTTTTATTTGATG
TTGAGGCAGATTGTTTGGGTGTATCTCCGTATTTATCATCCAGAGTAAAT
TTCGCGTTGATGTTTTTCAGATCCTCGTCACCGATGTGACGAGCATTGGA
AAATTCTTCTGAGTCAAGCAtaaaaataaacacaaatataATGTGCTTAC
ATGATACGGCTGACCCATGTTTTTTAAAGTCTAGGCAGGTGCATGTAGGT
ACATTACACACTGTAACGTTGTAATGTACCCTGCCGGACGAAGTTCCAAC
GATATGTACTTCCGTTTTTAGTACTGAATGTTTCACAACTTTTCTAACCT
TCAtaacattttcaagttttttagcACTCTCAAGTCTGCCCTGGAACATC
TTGTCTTtccctttttgttttttgggtgGTGGCTCGCATCCACTATTCGG
TTCTAATGGTTTCCGTTTTTCATCATTTAGAGAATCAACCATAAAGTCAG
TAATATCCTTTCCAAATCGTTCAGCGTGAGCGATATCTTTATATGCTTGT
TGCCTGTCT Coding sequence (CDS) from alignment at sc0000430:99995..100853 >TCONS_00022677 ID=TCONS_00022677|Name=TCONS_00022677|organism=Clytia hemisphaerica|type=CDS|length=852bp|location=Sequence derived from alignment at sc0000430:99995..100853 (Clytia hemisphaerica)
CTAAACATCAGCATAGAATTGAATATTTTCTAAAGTTAAACCATCTTCAA
ACACAAGACCATTTGTATCAGCAGGTGGCCTGATGTTAGACCACTTAGGA
CATTGCAGCAGACATGAATGTGCCGCGCAGAAATAGAATGTCCTCTCCAC
AACTTGCAGTTTCTCAAACAAGACCGATAGTGCCCCGTCAACTCTGATGC
AAATCTTTCCAATCTGAAGAATTTTATTACATCTATGGCCAGAACATTTT
GCGGTTCGTTTGCTTTTTTTGTGTACGGTAAATACTTGAGCTTGATTGTA
CAGATGGTGactttccaaattttctttccggcTTTTATTTGATGTTGAGG
CAGATTGTTTGGGTGTATCTCCGTATTTATCATCCAGAGTAAATTTCGCG
TTGATGTTTTTCAGATCCTCGTCACCGATGTGACGAGCATTGGAAAATTC
TTCTGAGTCAAGCAtaaaaataaacacaaatataATGTGCTTACATGATA
CGGCTGACCCATGTTTTTTAAAGTCTAGGCAGGTGCATGTAGGTACATTA
CACACTGTAACGTTGTAATGTACCCTGCCGGACGAAGTTCCAACGATATG
TACTTCCGTTTTTAGTACTGAATGTTTCACAACTTTTCTAACCTTCAtaa
cattttcaagttttttagcACTCTCAAGTCTGCCCTGGAACATCTTGTCT
TtccctttttgttttttgggtgGTGGCTCGCATCCACTATTCGGTTCTAA
TGGTTTCCGTTTTTCATCATTTAGAGAATCAACCATAAAGTCAGTAATAT
CCTTTCCAAATCGTTCAGCGTGAGCGATATCTTTATATGCTTGTTGCCTG
TC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022677-exon-sc0000430-1491911889:99995..100853 | TCONS_00022677-exon-sc0000430-1491911889:99995..100853 | Clytia hemisphaerica | exon |
| TCONS_00022677-exon-sc0000430-1510915933:99995..100853 | TCONS_00022677-exon-sc0000430-1510915933:99995..100853 | Clytia hemisphaerica | exon |
| TCONS_00022677-exon-sc0000430-1575043694:99995..100853 | TCONS_00022677-exon-sc0000430-1575043694:99995..100853 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000430 | supercontig | sc0000430:99995..100853 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007527 | Znf_SWIM |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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