TCONS_00022748 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022748
Unique NameTCONS_00022748
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length277

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022748 ID=TCONS_00022748|Name=TCONS_00022748|organism=Clytia hemisphaerica|type=transcript|length=277bp
NNGCCATCATTCCTTTGACACATTCAACGGCGTTTCTAAGTTCTTTTGCA
ACGTTTGTATCCATCGATTTACAAAGCCAAAGGGAAGTCAATATCTTCGA
CGAGTATCTGTCACCTTCAGTCATTTCGACATTTTCGATTGGGATTCCTT
CCTGTTCTGCAGCCGCCCTCAAGCATCGAACTTGTGATTTGGCATAATGA
TGGACCAATGTTTCATTATTCTGATTTTTTAGGGTAATGTACAGCGATGA
TACGTAACCATCAGTGAGGGAACGGAC
Run BLAST on NCBI

transcript from alignment at sc0000431:13902..14178

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022748 ID=TCONS_00022748|Name=TCONS_00022748|organism=Clytia hemisphaerica|type=transcript|length=277bp|location=Sequence derived from alignment at sc0000431:13902..14178 (Clytia hemisphaerica)
GTCCGTTCCCTCACTGATGGTTACGTATCATCGCTGTACATTACCCTAAA
AAATCAGAATAATGAAACATTGGTCCATCATTATGCCAAATCACAAGTTC
GATGCTTGAGGGCGGCTGCAGAACAGGAAGGAATCCCAATCGAAAATGTC
GAAATGACTGAAGGTGACAGATACTCGTCGAAGATATTGACTTCCCTTTG
GCTTTGTAAATCGATGGATACAAACGTTGCAAAAGAACTTAGAAACGCCG
TTGAATGTGTCAAAGGAATGATGGCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012772XLOC_012772Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022748-exon-sc0000431-1491911889:13902..14178TCONS_00022748-exon-sc0000431-1491911889:13902..14178Clytia hemisphaericaexon
TCONS_00022748-exon-sc0000431-1510915933:13902..14178TCONS_00022748-exon-sc0000431-1510915933:13902..14178Clytia hemisphaericaexon
TCONS_00022748-exon-sc0000431-1575043694:13902..14178TCONS_00022748-exon-sc0000431-1575043694:13902..14178Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000431supercontigsc0000431:13902..14178 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.51444	0	0	0	0	0.548212	0	0	0.433509	0.536971	0	1.71307	2.05283	1.77657	0	0	0.386188	0.791661	0	0	2.98434	3.63914	1.76954	3.7538	0	0.492943	1.4108	3.01129	0.570988	0.581747
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022748 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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