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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022759 ID=TCONS_00022759|Name=TCONS_00022759|organism=Clytia hemisphaerica|type=transcript|length=1631bp
CAGTaacttagaaaaaattaataaataaatggAAGTGGAAGCTAGCTTTC
GACCAAGGTTCAAAATTCGTGGAAACCAGATCAAATCAAAGCAAAGTAAT
GTTGAATCAAAagtagaatttaaaaatttaacgGACGATGTGGCTTTCTT
ATACTGGATAGATTTTCAAGGGAATCCTATTCTCTATGCTGAGATAAATC
CTTCTAATCGTACAGATGAAGGATTTCAACTTGTGACATTTGTAAATCAT
TTCTGGATTGCTTTGCTACCAGGGCGCACTCAAGCTCTGATGAATGGAAA
GCGATATTTCTTTCCCCCAAATCCAGTTAGTTGGCTTGCCAGAGAAAATG
GAGGGAGAAATTCCAAATGGACATTGAATGGAAATGAAACATCCAGTGAT
GCAAATAATGATGATCACTTTGAAGTCCTCCTGTTAAAACCAGGTTGCAG
AACACTCAAGGACACTGCTTTATTATGTTGTTGTGAAACGTTTGATGGAA
GCAAAGAGTTGGATAAGCTTCCAAGGAGCTTAAAAGTTGAACTAAGAATG
TGCAAACAGAAATATTTCTGGTGGTAATATAATATATGAATATCAAGATT
AATATTGCTCTTTTATCAGTGGCAGGTCATTGAAAGTCAACCAATTGAAG
CTTGCTTGTTGTTTTGTTGGTAAGAACTAACATTTTCTGTGATATAAACC
TATTGCACAAGATTGACCTCATACTATGATGTTTTCTTGAAAATCGAGTC
ATTTCTGAGAGGCTTTTGATAATAATGACCTAAAAAGTCATAAcagtatt
tttaatcaaaatttttctacaaatCCCAGTTATAGTCCTTGAACCATTCT
GAAAATCAGACATAATTGTTATGTGGAGATGAATTGTGTAGACAATCTAA
ATGGCCTTTTAAAAAGACCAGCCTATATAAAAGAAGTTTCATTGGTTCAT
CTCTTGCCAAAAGGCTCTTATCATCTTCCTCAAACAGaatgaaattttgg
ccaaaaagtttgtttgtctTCATTGATGTTGGCTTTATGAAGTTGATCGG
TGAACCTTCTGAATCTTCTACATCAAAATTGAGTTGTCTTGAATATCATT
AACCAAATTATGTGGAAATGCAACTGATACCCAGTTATCTCTTTTGTTca
aatctgatttttttctaaataagaTGTTTAATTCATCCTGTATATCAGTG
ACATGTTACCCATTGACTATTTTGCTATCCTCCTCTTTGTCATTTTACTC
TTCCAAACTCATCATACAAAGAAAATATGCTTCACAATGTATGAAAACAT
AAACTTAGATAAAATGTTTTGCTAATAATGTGTCATATCTGAAGTCACTC
ATCTCATTATCAGATGAGGCTAATACTTGGTTTTGATGATGGAGTTGATG
CCTcatccaaatttcgatcttttttCGACATGTAGATGTCAACAGCTCTT
CTTTAAACTTGTCTAGTTCAGCATCAGGTTTCCCTTTATCACCAGTCTGT
TGTTTCTGAGAAGAATGAAATCCTCAGACCAATACTTTTAAACAGCTGCT
GTGAAGTATAAGAAAGTCAATGTCACCGAAGTTTACTAGCTAGCGTCAAT
ACCTAATGGACATCAAATAcctatttcaaga Run BLAST on NCBI transcript from alignment at sc0000432:55523..57348+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022759 ID=TCONS_00022759|Name=TCONS_00022759|organism=Clytia hemisphaerica|type=transcript|length=1826bp|location=Sequence derived from alignment at sc0000432:55523..57348+ (Clytia hemisphaerica)
CAGTaacttagaaaaaattaataaataaatggAAGTGGAAGCTAGCTTTC
GACCAAGGTTCAAAATTCGTGGAAACCAGATCAAATCAAAGCAAAGTAAT
GTTGAATCAAAagtagaatttaaaaatttaacgGACGATGTGGCTTTCTT
ATACTGGATAGATTTTCAAGGGAATCCTATTCTCTATGCTGAGATAAATC
CTTCTAATCGTACAGATGAAGGATTTCAACTTGTGACATTTGTAAATCAT
TTCTGGATTGCTTTGCTACCAGGGCGCACTCAAGCTCTGATGAATGGAAA
GCGATATTTCTTTCCCCCAAATCCAGTTAGTTGGCTTGCCAGAGAAAATG
GAGGGAGAAATTCCAAATGGACATTGAATGGAAATGAAACATCCAGTGAT
GCAAATAATGATGATCACTTTGAAGTCCTCCTGTTAAAACCAGGTATGCA
ACAACTTATATAAAACACTTTACATTGATGCCATCatgtttgaagatttt
ttaattgTTGAGAGATTTAGTGTTGAAAAGAAAGATTGGACGTGATTTTT
TATTCTCTTATTTTAGAATTTAGCTAGTTCtaaaaaaatagtttaaaaat
tGAACAATTCTTCACTTGATTCTCATTTCTTCCTTTAGGTTGCAGAACAC
TCAAGGACACTGCTTTATTATGTTGTTGTGAAACGTTTGATGGAAGCAAA
GAGTTGGATAAGCTTCCAAGGAGCTTAAAAGTTGAACTAAGAATGTGCAA
ACAGAAATATTTCTGGTGGTAATATAATATATGAATATCAAGATTAATAT
TGCTCTTTTATCAGTGGCAGGTCATTGAAAGTCAACCAATTGAAGCTTGC
TTGTTGTTTTGTTGGTAAGAACTAACATTTTCTGTGATATAAACCTATTG
CACAAGATTGACCTCATACTATGATGTTTTCTTGAAAATCGAGTCATTTC
TGAGAGGCTTTTGATAATAATGACCTAAAAAGTCATAAcagtatttttaa
tcaaaatttttctacaaatCCCAGTTATAGTCCTTGAACCATTCTGAAAA
TCAGACATAATTGTTATGTGGAGATGAATTGTGTAGACAATCTAAATGGC
CTTTTAAAAAGACCAGCCTATATAAAAGAAGTTTCATTGGTTCATCTCTT
GCCAAAAGGCTCTTATCATCTTCCTCAAACAGaatgaaattttggccaaa
aagtttgtttgtctTCATTGATGTTGGCTTTATGAAGTTGATCGGTGAAC
CTTCTGAATCTTCTACATCAAAATTGAGTTGTCTTGAATATCATTAACCA
AATTATGTGGAAATGCAACTGATACCCAGTTATCTCTTTTGTTcaaatct
gatttttttctaaataagaTGTTTAATTCATCCTGTATATCAGTGACATG
TTACCCATTGACTATTTTGCTATCCTCCTCTTTGTCATTTTACTCTTCCA
AACTCATCATACAAAGAAAATATGCTTCACAATGTATGAAAACATAAACT
TAGATAAAATGTTTTGCTAATAATGTGTCATATCTGAAGTCACTCATCTC
ATTATCAGATGAGGCTAATACTTGGTTTTGATGATGGAGTTGATGCCTca
tccaaatttcgatcttttttCGACATGTAGATGTCAACAGCTCTTCTTTA
AACTTGTCTAGTTCAGCATCAGGTTTCCCTTTATCACCAGTCTGTTGTTT
CTGAGAAGAATGAAATCCTCAGACCAATACTTTTAAACAGCTGCTGTGAA
GTATAAGAAAGTCAATGTCACCGAAGTTTACTAGCTAGCGTCAATACCTA
ATGGACATCAAATAcctatttcaaga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022759-exon-sc0000432-1491911889:55523..55965 | TCONS_00022759-exon-sc0000432-1491911889:55523..55965 | Clytia hemisphaerica | exon |
| TCONS_00022759-exon-sc0000432-1510915933:55523..55965 | TCONS_00022759-exon-sc0000432-1510915933:55523..55965 | Clytia hemisphaerica | exon |
| TCONS_00022759-exon-sc0000432-1575043694:55523..55965 | TCONS_00022759-exon-sc0000432-1575043694:55523..55965 | Clytia hemisphaerica | exon |
| TCONS_00022759-exon-sc0000432-1491911889:56161..57348 | TCONS_00022759-exon-sc0000432-1491911889:56161..57348 | Clytia hemisphaerica | exon |
| TCONS_00022759-exon-sc0000432-1510915933:56161..57348 | TCONS_00022759-exon-sc0000432-1510915933:56161..57348 | Clytia hemisphaerica | exon |
| TCONS_00022759-exon-sc0000432-1575043694:56161..57348 | TCONS_00022759-exon-sc0000432-1575043694:56161..57348 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000432 | supercontig | sc0000432:55523..57348 + |
Blast
The following BLAST results are available for this feature:
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